Wall clock time and date at job start Mon Mar 30 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.52996 * 109.47041 * 240.00309 * 2 1 3 5 5 C 1.50695 * 109.47503 * 59.99799 * 4 2 1 6 6 H 1.08005 * 119.99460 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00448 * 180.02562 * 5 4 2 8 8 N 1.31506 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99849 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47184 * 90.00264 * 9 7 5 11 11 H 1.48505 * 109.46996 * 209.99923 * 9 7 5 12 12 H 1.48500 * 109.47548 * 329.99555 * 9 7 5 13 13 C 1.53005 * 109.47305 * 120.00060 * 2 1 3 14 14 N 1.46898 * 109.46959 * 174.66232 * 13 2 1 15 15 C 1.48041 * 110.99934 * 78.17972 * 14 13 2 16 16 C 1.51200 * 105.68283 * 146.98760 * 15 14 13 17 17 C 1.38229 * 131.71527 * 162.48871 * 16 15 14 18 18 C 1.38121 * 120.10673 * 179.97438 * 17 16 15 19 19 C 1.38759 * 119.94675 * 0.04287 * 18 17 16 20 20 O 1.35903 * 120.05756 * 180.02562 * 19 18 17 21 21 C 1.38717 * 119.88116 * 359.97438 * 19 18 17 22 22 C 1.38091 * 119.98648 * 359.97438 * 21 19 18 23 23 C 1.48048 * 110.99888 * 193.19018 * 14 13 2 24 24 H 1.09001 * 109.46738 * 297.50696 * 1 2 3 25 25 H 1.09000 * 109.47152 * 57.50860 * 1 2 3 26 26 H 1.08997 * 109.47239 * 177.50977 * 1 2 3 27 27 H 1.08998 * 109.46928 * 193.42111 * 3 2 1 28 28 H 1.08997 * 109.47411 * 313.42392 * 3 2 1 29 29 H 1.09005 * 109.47026 * 73.42448 * 3 2 1 30 30 H 1.09005 * 109.47398 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47118 * 299.99981 * 4 2 1 32 32 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46973 * 294.66481 * 13 2 1 34 34 H 1.09003 * 109.46678 * 54.66487 * 13 2 1 35 35 H 1.09007 * 110.20776 * 266.03421 * 15 14 13 36 36 H 1.09001 * 110.21225 * 27.93108 * 15 14 13 37 37 H 1.08003 * 119.94665 * 359.97240 * 17 16 15 38 38 H 1.07997 * 120.02782 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99429 * 269.96982 * 20 19 18 40 40 H 1.07998 * 120.00714 * 180.02562 * 21 19 18 41 41 H 1.09006 * 110.20907 * 332.06065 * 23 14 13 42 42 H 1.08996 * 110.21036 * 93.95856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3805 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5513 -3.8527 9 14 1.2481 0.3990 -5.2571 10 1 2.2270 1.4399 -5.6614 11 1 1.0823 -0.5801 -6.3614 12 1 -0.0596 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2493 14 7 3.5034 -0.8338 1.1865 15 6 4.1501 0.4469 1.5515 16 6 5.4418 0.0704 2.2414 17 6 6.5851 0.7980 2.5136 18 6 7.6444 0.2036 3.1711 19 6 7.5611 -1.1263 3.5582 20 8 8.6019 -1.7132 4.2058 21 6 6.4133 -1.8553 3.2840 22 6 5.3561 -1.2569 2.6274 23 6 4.0061 -1.7877 2.2010 24 1 -0.3633 0.4746 0.9115 25 1 -0.3633 0.5520 -0.8668 26 1 -0.3633 -1.0267 -0.0446 27 1 3.1035 1.4518 -0.2385 28 1 1.4952 2.0206 -0.7463 29 1 1.8847 1.8828 0.9850 30 1 3.1300 -0.7216 -1.2491 31 1 1.6766 -1.7488 -1.2493 32 1 2.8601 -1.8831 -4.7337 33 1 1.7569 -0.1553 2.1366 34 1 1.6008 -1.7177 1.2983 35 1 4.3584 1.0322 0.6559 36 1 3.5111 1.0113 2.2307 37 1 6.6502 1.8329 2.2117 38 1 8.5369 0.7734 3.3836 39 1 9.2459 -2.1307 3.6175 40 1 6.3461 -2.8903 3.5847 41 1 3.3286 -1.8218 3.0542 42 1 4.1127 -2.7806 1.7641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600186263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:54 Heat of formation + Delta-G solvation = -31.207925 kcal Electronic energy + Delta-G solvation = -21441.481271 eV Core-core repulsion = 18385.654226 eV Total energy + Delta-G solvation = -3055.827046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57707 -39.67045 -38.07815 -36.05874 -34.33763 -32.35596 -31.20111 -29.16714 -28.73279 -27.50951 -26.95480 -24.91759 -23.50336 -22.33483 -22.19745 -19.58254 -18.92267 -18.27293 -17.32634 -16.92169 -16.55481 -16.34772 -16.13432 -15.45288 -15.18590 -14.70719 -14.56558 -14.54732 -14.02976 -13.85711 -13.82552 -13.52466 -13.12681 -12.94009 -12.77770 -12.66754 -12.66006 -12.42495 -12.30651 -12.14039 -12.02720 -11.73592 -11.36517 -11.23799 -10.75246 -10.68137 -10.41735 -9.90724 -9.66034 -9.00852 -8.05665 -6.12164 0.21202 0.33215 1.41995 1.42226 1.52421 2.47882 2.57981 3.00794 3.19226 3.27772 3.55415 3.62451 4.03991 4.12058 4.17159 4.31043 4.35849 4.43582 4.50967 4.54218 4.61328 4.67958 4.80892 4.83225 4.93525 4.94883 4.98353 5.03358 5.20143 5.25149 5.29135 5.39822 5.53376 5.54120 5.60001 5.66013 5.75270 5.83306 5.95088 6.01151 6.10341 6.21130 6.46446 6.84435 7.06798 7.54282 9.06038 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.004174 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.210196 B = 6706.449038 C = 7108.749861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C -0.124 4.124 4 C 0.059 3.941 5 C -0.515 4.515 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.264 1.264 13 C 0.066 3.934 14 N -0.515 5.515 15 C 0.079 3.921 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.145 4.145 19 C 0.101 3.899 20 O -0.505 6.505 21 C -0.136 4.136 22 C -0.096 4.096 23 C 0.076 3.924 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.002 0.998 31 H -0.028 1.028 32 H 0.256 0.744 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.410 0.590 40 H 0.138 0.862 41 H 0.073 0.927 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 3.277 16.333 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.181 4.181 4 C 0.022 3.978 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.188 1.188 13 C -0.062 4.062 14 N -0.239 5.239 15 C -0.048 4.048 16 C -0.126 4.126 17 C -0.106 4.106 18 C -0.163 4.163 19 C 0.057 3.943 20 O -0.318 6.318 21 C -0.155 4.155 22 C -0.097 4.097 23 C -0.052 4.052 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.020 0.980 31 H -0.010 1.010 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.269 0.731 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.118 3.191 16.153 17.938 hybrid contribution -0.185 -0.053 -0.927 0.947 sum 6.933 3.138 15.226 17.022 Atomic orbital electron populations 1.21664 0.94556 1.00760 1.00963 1.20521 0.95134 0.95658 0.94516 1.21914 1.00787 0.95242 1.00109 1.18792 0.95181 0.92639 0.91189 1.21765 1.29867 1.11717 0.92016 0.92074 1.25856 0.95892 0.95901 1.02303 1.70131 1.39055 1.24982 1.23614 0.85682 0.79057 0.78278 0.79435 1.20276 1.21459 1.18781 1.22402 0.86323 1.00420 0.97036 1.65169 1.07316 1.06324 1.45043 1.21902 0.91543 0.92746 0.98654 1.20933 0.96609 0.95271 0.99787 1.20629 0.91211 1.00843 0.97949 1.21554 1.00292 0.95036 0.99460 1.18358 0.88754 0.91769 0.95449 1.84759 1.35535 1.75014 1.36536 1.20855 0.93033 1.01131 1.00485 1.20563 0.95905 0.95207 0.97996 1.21644 0.91889 0.97666 0.93958 0.91778 0.93448 0.94213 0.93239 0.94010 0.92265 0.97972 1.01011 0.93474 0.92856 0.91499 0.89686 0.91044 0.83657 0.82951 0.73067 0.84398 0.90903 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.14 71.98 0.59 -3.78 16 2 C -0.06 -2.26 0.61 -52.18 -0.03 -2.29 16 3 C -0.12 -4.40 6.72 71.98 0.48 -3.92 16 4 C 0.06 3.08 3.78 29.85 0.11 3.19 16 5 C -0.52 -28.77 7.80 25.60 0.20 -28.57 16 6 H 0.06 3.27 5.77 -2.91 -0.02 3.25 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 9 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.07 2.18 3.87 86.31 0.33 2.51 16 14 N -0.52 -17.65 4.42 -897.10 -3.97 -21.62 16 15 C 0.08 2.36 4.88 85.50 0.42 2.78 16 16 C -0.13 -3.49 6.26 -19.65 -0.12 -3.61 16 17 C -0.09 -2.03 10.04 22.24 0.22 -1.81 16 18 C -0.15 -3.02 9.99 22.37 0.22 -2.80 16 19 C 0.10 2.23 6.71 22.51 0.15 2.38 16 20 O -0.51 -9.16 13.50 -92.46 -1.25 -10.41 16 21 C -0.14 -3.30 9.98 22.35 0.22 -3.08 16 22 C -0.10 -2.66 6.26 -19.68 -0.12 -2.79 16 23 C 0.08 2.19 6.55 85.49 0.56 2.75 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.84 6.69 -2.39 -0.02 1.83 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.86 5.31 -2.39 -0.01 1.85 16 28 H 0.04 1.57 7.04 -2.39 -0.02 1.55 16 29 H 0.06 1.69 7.55 -2.38 -0.02 1.68 16 30 H 0.00 0.11 7.46 -2.38 -0.02 0.09 16 31 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 1.48 7.52 -2.39 -0.02 1.46 16 34 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 35 H 0.09 2.80 5.88 -2.38 -0.01 2.79 16 36 H 0.07 1.90 6.95 -2.39 -0.02 1.89 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.41 3.53 9.06 -74.06 -0.67 2.86 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.07 1.83 7.81 -2.38 -0.02 1.81 16 42 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -69.45 329.24 1.14 -68.31 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.35 Total: 13.45 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 3.70 Total: -38.74 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -3.68 Total: -79.68 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.25 Total: -10.41 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.45 1.14 -68.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600186263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.104 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds