Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46803 * 2 1 4 4 C 1.53005 * 109.47107 * 119.99936 * 2 1 3 5 5 C 1.52999 * 109.47074 * 65.00467 * 4 2 1 6 6 C 1.52995 * 109.47191 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08998 * 109.47377 * 299.99569 * 1 2 3 25 25 H 1.08994 * 109.47286 * 60.00202 * 1 2 3 26 26 H 1.09008 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47377 * 240.00431 * 2 1 3 28 28 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47035 * 299.99952 * 3 2 1 30 30 H 1.08998 * 109.46802 * 60.00079 * 3 2 1 31 31 H 1.09004 * 109.47249 * 305.00238 * 4 2 1 32 32 H 1.08999 * 109.46781 * 185.00241 * 4 2 1 33 33 H 1.08999 * 109.46806 * 59.99763 * 5 4 2 34 34 H 1.09005 * 109.47011 * 299.99982 * 5 4 2 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 4 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 4 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1880 6 6 2.1448 -2.9166 2.4375 7 7 1.7568 -4.3280 2.3791 8 6 2.1003 -5.1633 3.3795 9 8 2.7319 -4.7452 4.3309 10 6 1.7103 -6.5839 3.3204 11 6 0.9287 -7.0543 2.2687 12 6 0.5604 -8.3856 2.2202 13 6 0.9674 -9.2695 3.2104 14 6 1.7452 -8.8354 4.2594 15 6 2.1328 -7.4848 4.3327 16 6 2.9286 -7.0302 5.4028 17 1 3.6587 -6.2513 5.2398 18 6 2.7725 -7.5893 6.6798 19 7 1.6777 -8.2353 6.9805 20 14 4.1301 -7.4098 7.9503 21 1 5.0694 -8.5543 7.8359 22 1 4.8647 -6.1411 7.7139 23 1 3.5355 -7.3915 9.3108 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0700 -2.6549 0.3002 34 1 0.5490 -2.2725 1.1420 35 1 1.7097 -2.4570 3.3250 36 1 3.2311 -2.8396 2.4839 37 1 1.2527 -4.6614 1.6204 38 1 0.6054 -6.3768 1.4920 39 1 -0.0498 -8.7421 1.4036 40 1 0.6711 -10.3067 3.1571 41 1 2.0574 -9.5302 5.0249 42 1 0.9426 -8.2647 6.3484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600992239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = -54.855589 kcal Electronic energy + Delta-G solvation = -20667.236651 eV Core-core repulsion = 17610.384165 eV Total energy + Delta-G solvation = -3056.852485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.03724 -37.49244 -36.77721 -34.44241 -33.80045 -31.28081 -29.81249 -29.26141 -27.39509 -26.02373 -24.93585 -22.47020 -21.59646 -20.81899 -20.21469 -19.30726 -18.04905 -16.37913 -15.86048 -15.33351 -14.78326 -14.72349 -14.29809 -14.16252 -13.89595 -13.69748 -13.48450 -13.31028 -12.59428 -12.44815 -12.26808 -12.18994 -11.87879 -11.77905 -11.57788 -11.20450 -11.10076 -10.88824 -10.85089 -10.73743 -10.68232 -10.56634 -10.36001 -10.14458 -9.59467 -9.06445 -8.48147 -8.35247 -7.77760 -7.59536 -7.12983 -4.44779 2.25722 2.74326 3.21010 3.32110 3.43097 3.93267 4.05581 4.09679 4.61471 4.65464 4.69441 4.74448 5.08320 5.18292 5.36240 5.42990 5.47494 5.49213 5.58994 5.62613 5.72060 5.81130 5.82323 5.88497 5.98416 6.00295 6.06871 6.12949 6.18578 6.29298 6.30406 6.54032 6.72778 7.00227 7.15639 7.29354 7.50460 7.62524 7.73248 7.90426 8.11079 8.23144 8.40655 8.74924 8.87905 9.39251 10.05697 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003909 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.195606 B = 7161.864121 C = 8326.647880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.125 3.875 7 N -0.750 5.750 8 C 0.562 3.438 9 O -0.538 6.538 10 C -0.265 4.265 11 C -0.044 4.044 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.201 4.201 15 C 0.120 3.880 16 C -0.467 4.467 17 H 0.106 0.894 18 C 0.031 3.969 19 N -0.795 5.795 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.390 0.610 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 11.303 -10.741 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.405 5.405 8 C 0.356 3.644 9 O -0.416 6.416 10 C -0.270 4.270 11 C -0.062 4.062 12 C -0.280 4.280 13 C -0.095 4.095 14 C -0.220 4.220 15 C 0.116 3.884 16 C -0.494 4.494 17 H 0.123 0.877 18 C -0.191 4.191 19 N -0.418 5.418 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.225 0.775 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.297 11.173 -8.466 14.022 hybrid contribution -0.938 0.184 -2.120 2.326 sum -1.236 11.357 -10.587 15.575 Atomic orbital electron populations 1.21906 0.95322 1.01993 1.01517 1.21123 0.95916 0.96073 0.98461 1.21845 1.00954 0.96097 1.01606 1.21569 1.01117 0.94424 0.97890 1.21851 1.01568 0.95467 0.98030 1.21137 0.99660 0.81786 0.97359 1.46019 1.60628 1.09031 1.24804 1.18386 0.78721 0.86093 0.81240 1.90675 1.40329 1.77912 1.32718 1.19418 1.12203 0.91781 1.03592 1.20717 0.95321 0.94944 0.95265 1.20240 1.11221 0.94211 1.02286 1.20745 0.96789 0.97496 0.94451 1.21253 1.05199 0.95611 0.99986 1.17515 0.88748 0.90189 0.91965 1.21214 1.16438 1.17790 0.93922 0.87656 1.27273 1.00630 0.90918 1.00251 1.70360 1.03798 1.28336 1.39309 0.83518 0.74308 0.77755 0.74774 1.20061 1.19746 1.20152 0.92703 0.93022 0.92310 0.91288 0.92719 0.92898 0.92702 0.91651 0.91683 0.91593 0.91309 0.92364 0.92372 0.77545 0.89133 0.88911 0.88885 0.87536 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 2 C -0.10 -0.81 2.92 -90.61 -0.26 -1.07 16 3 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 4 C -0.11 -1.08 4.68 -26.73 -0.13 -1.20 16 5 C -0.13 -1.45 5.08 -26.73 -0.14 -1.58 16 6 C 0.12 1.91 5.67 -4.05 -0.02 1.89 16 7 N -0.75 -13.55 5.51 -61.38 -0.34 -13.88 16 8 C 0.56 13.31 7.73 -12.52 -0.10 13.22 16 9 O -0.54 -14.57 13.56 5.27 0.07 -14.50 16 10 C -0.27 -6.54 5.92 -104.36 -0.62 -7.16 16 11 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 12 C -0.26 -5.49 10.03 -39.37 -0.39 -5.89 16 13 C -0.08 -1.69 10.01 -39.59 -0.40 -2.09 16 14 C -0.20 -5.07 7.87 -38.88 -0.31 -5.38 16 15 C 0.12 3.25 5.17 -106.54 -0.55 2.69 16 16 C -0.47 -13.02 7.65 -37.81 -0.29 -13.31 16 17 H 0.11 3.08 5.92 -52.49 -0.31 2.77 16 18 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 19 N -0.79 -21.53 12.57 55.56 0.70 -20.83 16 20 Si 1.07 22.85 29.98 -169.99 -5.10 17.75 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 6.56 -51.92 -0.34 0.15 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 6.05 6.51 -40.82 -0.27 5.78 16 38 H 0.09 1.59 6.41 -52.48 -0.34 1.25 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 42 H 0.30 8.26 6.55 -40.82 -0.27 8.00 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -30.09 339.54 -9.05 -39.14 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.52 Total: 9.31 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -2.99 Total: -22.12 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.36 Total: -34.71 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.07 Total: -14.50 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.10 Total: 17.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.09 -9.05 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600992239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.713 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds