Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46803 * 2 1 4 4 C 1.53005 * 109.47107 * 119.99936 * 2 1 3 5 5 C 1.52999 * 109.47074 * 65.00467 * 4 2 1 6 6 C 1.52995 * 109.47191 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08998 * 109.47377 * 299.99569 * 1 2 3 25 25 H 1.08994 * 109.47286 * 60.00202 * 1 2 3 26 26 H 1.09008 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47377 * 240.00431 * 2 1 3 28 28 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47035 * 299.99952 * 3 2 1 30 30 H 1.08998 * 109.46802 * 60.00079 * 3 2 1 31 31 H 1.09004 * 109.47249 * 305.00238 * 4 2 1 32 32 H 1.08999 * 109.46781 * 185.00241 * 4 2 1 33 33 H 1.08999 * 109.46806 * 59.99763 * 5 4 2 34 34 H 1.09005 * 109.47011 * 299.99982 * 5 4 2 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 4 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 4 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1955 1.1880 6 6 2.1448 -2.9166 2.4375 7 7 1.7568 -4.3280 2.3791 8 6 2.1003 -5.1633 3.3795 9 8 2.7319 -4.7452 4.3309 10 6 1.7103 -6.5839 3.3204 11 6 0.9287 -7.0543 2.2687 12 6 0.5604 -8.3856 2.2202 13 6 0.9674 -9.2695 3.2104 14 6 1.7452 -8.8354 4.2594 15 6 2.1328 -7.4848 4.3327 16 6 2.9286 -7.0302 5.4028 17 1 3.6587 -6.2513 5.2398 18 6 2.7725 -7.5893 6.6798 19 7 1.6777 -8.2353 6.9805 20 14 4.1301 -7.4098 7.9503 21 1 5.0694 -8.5543 7.8359 22 1 4.8647 -6.1411 7.7139 23 1 3.5355 -7.3915 9.3108 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0700 -2.6549 0.3002 34 1 0.5490 -2.2725 1.1420 35 1 1.7097 -2.4570 3.3250 36 1 3.2311 -2.8396 2.4839 37 1 1.2527 -4.6614 1.6204 38 1 0.6054 -6.3768 1.4920 39 1 -0.0498 -8.7421 1.4036 40 1 0.6711 -10.3067 3.1571 41 1 2.0574 -9.5302 5.0249 42 1 0.9426 -8.2647 6.3484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600992239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -71.639470 kcal Electronic energy + Delta-G solvation = -20667.964454 eV Core-core repulsion = 17610.384165 eV Total energy + Delta-G solvation = -3057.580289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82387 -38.93795 -38.00972 -36.07765 -35.49589 -32.65415 -31.54255 -30.98474 -28.00240 -27.49163 -26.53336 -24.08043 -22.97946 -22.48821 -21.31405 -20.65940 -19.93712 -18.09681 -16.99122 -16.78512 -16.52470 -15.93926 -15.80484 -15.74248 -15.44942 -14.96607 -14.78687 -14.47919 -14.21855 -13.93749 -13.73971 -13.27097 -13.07723 -12.92237 -12.71342 -12.61923 -12.57115 -12.48943 -12.06478 -12.00706 -11.94311 -11.61748 -11.46500 -11.39320 -11.35205 -10.96377 -10.35907 -10.00894 -9.61198 -9.50163 -9.10874 -6.47143 0.39431 0.89929 1.45326 1.61487 1.76464 2.24630 2.30356 2.43685 2.73589 3.55502 3.77223 3.94636 4.02153 4.18320 4.21275 4.26524 4.34755 4.45773 4.53514 4.66404 4.71842 4.77673 4.82954 4.87484 4.89062 4.98907 5.03899 5.10400 5.13529 5.21866 5.24397 5.35283 5.42484 5.51130 5.55326 5.59751 5.65652 5.71257 5.89349 5.96333 6.20067 6.33269 6.69128 6.85235 6.92671 7.60545 8.03683 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003909 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.195606 B = 7161.864121 C = 8326.647880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.123 3.877 7 N -0.728 5.728 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.284 4.284 11 C -0.041 4.041 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.095 3.905 16 C -0.512 4.512 17 H 0.079 0.921 18 C -0.003 4.003 19 N -0.818 5.818 20 Si 1.118 2.882 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.407 0.593 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 11.627 -13.550 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.001 4.001 7 N -0.382 5.382 8 C 0.347 3.653 9 O -0.464 6.464 10 C -0.289 4.289 11 C -0.060 4.060 12 C -0.262 4.262 13 C -0.091 4.091 14 C -0.246 4.246 15 C 0.091 3.909 16 C -0.540 4.540 17 H 0.097 0.903 18 C -0.218 4.218 19 N -0.442 5.442 20 Si 0.936 3.064 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.191 1.191 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.244 0.756 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.483 11.502 -11.340 16.220 hybrid contribution -0.706 0.127 -1.536 1.695 sum -2.190 11.629 -12.876 17.487 Atomic orbital electron populations 1.21914 0.95013 1.02017 1.01849 1.21097 0.96129 0.96352 0.97672 1.21843 1.01020 0.95652 1.01986 1.21562 1.01105 0.93557 0.98647 1.21772 1.02095 0.95723 0.95868 1.21315 0.99121 0.80335 0.99306 1.45795 1.59240 1.09575 1.23613 1.18500 0.78483 0.86587 0.81754 1.90656 1.42323 1.78603 1.34795 1.19828 1.12603 0.92342 1.04131 1.21164 0.93678 0.96150 0.95002 1.20827 1.09479 0.93670 1.02274 1.21175 0.95039 0.99543 0.93300 1.21212 1.07278 0.94851 1.01211 1.17918 0.88966 0.91444 0.92591 1.21125 1.18299 1.19051 0.95528 0.90301 1.28479 1.01784 0.89958 1.01607 1.70469 1.03972 1.30950 1.38809 0.82983 0.72310 0.78179 0.72963 1.17875 1.20071 1.19106 0.93034 0.92110 0.92406 0.90774 0.92673 0.91991 0.92889 0.92097 0.91838 0.90285 0.90216 0.93742 0.93496 0.75636 0.84591 0.84417 0.85678 0.89254 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.95 71.98 0.64 -1.42 16 2 C -0.09 -1.34 2.92 -10.79 -0.03 -1.37 16 3 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 4 C -0.11 -1.93 4.68 30.60 0.14 -1.79 16 5 C -0.12 -2.30 5.08 30.59 0.16 -2.14 16 6 C 0.12 3.67 5.67 86.38 0.49 4.16 16 7 N -0.73 -25.33 5.51 -466.37 -2.57 -27.89 16 8 C 0.55 26.55 7.73 86.67 0.67 27.22 16 9 O -0.58 -33.01 13.56 -4.06 -0.06 -33.06 16 10 C -0.28 -14.00 5.92 -19.70 -0.12 -14.11 16 11 C -0.04 -1.63 9.53 22.50 0.21 -1.41 16 12 C -0.24 -9.22 10.03 22.41 0.22 -9.00 16 13 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 14 C -0.23 -11.59 7.87 22.72 0.18 -11.41 16 15 C 0.09 5.28 5.17 -21.11 -0.11 5.17 16 16 C -0.51 -30.27 7.65 23.41 0.18 -30.09 16 17 H 0.08 4.96 5.92 -2.91 -0.02 4.95 16 18 C 0.00 -0.17 5.04 85.37 0.43 0.26 16 19 N -0.82 -46.43 12.57 21.88 0.28 -46.15 16 20 Si 1.12 48.08 29.98 68.60 2.06 50.14 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.79 6.56 -2.38 -0.02 0.78 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.43 6.56 -2.38 -0.02 1.42 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.41 11.28 6.51 -92.71 -0.60 10.68 16 38 H 0.14 4.04 6.41 -2.91 -0.02 4.02 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.09 4.79 6.94 -2.91 -0.02 4.77 16 42 H 0.28 16.51 6.55 -92.71 -0.61 15.91 16 Total: -1.00 -69.77 339.54 4.23 -65.54 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.56 Total: 31.46 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.96 Total: -40.03 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.29 Total: -74.05 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.06 Total: -33.06 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.06 Total: 50.14 kcal Total: -69.77 4.23 -65.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600992239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.098 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds