Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.53006 * 109.46851 * 119.99818 * 2 1 3 5 5 C 1.52999 * 109.47300 * 65.00266 * 4 2 1 6 6 N 1.46500 * 109.47221 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00012 * 270.00051 * 6 5 4 8 8 C 1.34778 * 119.99951 * 89.99596 * 6 5 4 9 9 O 1.21608 * 120.00079 * 5.21923 * 8 6 5 10 10 C 1.47426 * 119.99809 * 185.21557 * 8 6 5 11 11 C 1.39230 * 120.28255 * 313.18066 * 10 8 6 12 12 C 1.38227 * 120.09015 * 180.28626 * 11 10 8 13 13 C 1.38829 * 120.67549 * 359.71235 * 12 11 10 14 14 C 1.37602 * 120.56941 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.88254 * 0.02562 * 14 13 12 16 16 C 1.40892 * 120.32704 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00216 * 149.55620 * 16 15 14 18 18 C 1.40268 * 119.99595 * 329.54851 * 16 15 14 19 19 N 1.30632 * 120.00410 * 336.33007 * 18 16 15 20 20 Si 1.86799 * 119.99916 * 156.32797 * 18 16 15 21 21 H 1.48501 * 109.47257 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47230 * 300.00522 * 20 18 16 23 23 H 1.48503 * 109.46906 * 60.00012 * 20 18 16 24 24 H 1.09003 * 109.46898 * 60.00571 * 1 2 3 25 25 H 1.09006 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47273 * 300.00130 * 1 2 3 27 27 H 1.08992 * 109.47650 * 239.99525 * 2 1 3 28 28 H 1.08998 * 109.47120 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.46962 * 299.99393 * 3 2 1 30 30 H 1.08995 * 109.47204 * 59.99827 * 3 2 1 31 31 H 1.09004 * 109.46971 * 304.99884 * 4 2 1 32 32 H 1.08998 * 109.46920 * 185.00073 * 4 2 1 33 33 H 1.09003 * 109.46908 * 59.99969 * 5 4 2 34 34 H 1.09003 * 109.46829 * 300.00198 * 5 4 2 35 35 H 1.09002 * 109.47107 * 265.64565 * 7 6 5 36 36 H 1.09003 * 109.46948 * 25.64164 * 7 6 5 37 37 H 1.09001 * 109.47338 * 145.64518 * 7 6 5 38 38 H 1.07994 * 119.95636 * 359.97438 * 11 10 8 39 39 H 1.07995 * 119.66147 * 179.74198 * 12 11 10 40 40 H 1.08002 * 119.71399 * 180.02562 * 13 12 11 41 41 H 1.07997 * 120.05461 * 180.02562 * 14 13 12 42 42 H 0.96999 * 119.99647 * 354.15203 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1240 -2.8862 2.3840 7 6 3.4523 -3.5041 2.3815 8 6 1.3517 -2.9530 3.4866 9 8 0.2141 -2.5242 3.4590 10 6 1.8861 -3.5461 4.7260 11 6 2.5662 -4.7604 4.6868 12 6 3.0605 -5.3157 5.8521 13 6 2.8922 -4.6719 7.0705 14 6 2.2292 -3.4681 7.1402 15 6 1.7155 -2.8819 5.9688 16 6 1.0356 -1.6494 6.0293 17 1 1.0712 -0.9713 5.1896 18 6 0.3122 -1.3033 7.1802 19 7 -0.1265 -2.2371 7.9814 20 14 -0.0236 0.4931 7.5672 21 1 -0.8004 0.5907 8.8291 22 1 1.2646 1.2152 7.7223 23 1 -0.8015 1.1013 6.4581 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8898 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 3.1262 -0.6443 1.2953 33 1 2.0699 -2.6550 0.3004 34 1 0.5489 -2.2724 1.1421 35 1 3.3626 -4.5573 2.1153 36 1 4.0870 -2.9982 1.6539 37 1 3.8956 -3.4166 3.3735 38 1 2.7034 -5.2715 3.7454 39 1 3.5833 -6.2599 5.8143 40 1 3.2851 -5.1196 7.9714 41 1 2.1034 -2.9742 8.0924 42 1 -0.0268 -3.1708 7.7384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600993183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = -40.796863 kcal Electronic energy + Delta-G solvation = -21734.881070 eV Core-core repulsion = 18678.638217 eV Total energy + Delta-G solvation = -3056.242853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.37717 -37.37381 -36.34802 -34.63888 -33.82125 -30.58220 -29.55164 -28.70699 -27.10087 -26.20258 -25.24368 -23.63992 -21.49197 -20.97080 -19.89936 -18.80604 -17.69458 -16.35078 -15.68049 -15.23092 -14.88288 -14.75996 -14.21943 -14.03076 -13.59945 -13.49458 -13.32478 -12.65470 -12.55909 -12.34989 -12.16527 -12.13327 -11.95270 -11.75264 -11.64855 -11.25727 -11.16007 -10.91395 -10.79490 -10.73229 -10.58158 -10.39709 -10.35069 -10.06226 -9.56404 -9.04590 -8.70197 -8.04170 -7.73648 -7.64717 -7.22243 -4.48799 2.38249 2.74405 3.16952 3.27529 3.36637 3.63530 3.91127 4.01618 4.54816 4.91204 4.96909 5.02213 5.29288 5.40150 5.49768 5.60359 5.66427 5.69724 5.74704 5.80887 5.82381 5.93624 6.00139 6.02544 6.10487 6.13328 6.16558 6.24310 6.27542 6.43160 6.51504 6.56465 6.78042 7.00541 7.15104 7.28700 7.52491 7.61692 7.72563 7.82804 8.01505 8.18365 8.21941 8.67407 8.79164 9.21613 10.00863 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.006906 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.323680 B = 4053.753366 C = 5634.020293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.131 4.131 5 C 0.118 3.882 6 N -0.629 5.629 7 C 0.086 3.914 8 C 0.580 3.420 9 O -0.536 6.536 10 C -0.259 4.259 11 C -0.048 4.048 12 C -0.262 4.262 13 C -0.073 4.073 14 C -0.210 4.210 15 C 0.127 3.873 16 C -0.483 4.483 17 H 0.079 0.921 18 C 0.039 3.961 19 N -0.786 5.786 20 Si 1.064 2.936 21 H -0.272 1.272 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 2.477 -11.064 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.169 4.169 5 C -0.005 4.005 6 N -0.365 5.365 7 C -0.058 4.058 8 C 0.373 3.627 9 O -0.413 6.413 10 C -0.263 4.263 11 C -0.067 4.067 12 C -0.282 4.282 13 C -0.092 4.092 14 C -0.229 4.229 15 C 0.123 3.877 16 C -0.510 4.510 17 H 0.097 0.903 18 C -0.184 4.184 19 N -0.408 5.408 20 Si 0.887 3.113 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.171 3.668 -9.902 11.353 hybrid contribution 0.884 -1.245 -1.187 1.934 sum 5.055 2.423 -11.089 12.426 Atomic orbital electron populations 1.21891 0.95116 1.02116 1.01526 1.21043 0.96097 0.96024 0.97951 1.21826 1.00693 0.96169 1.01635 1.22032 1.00676 0.95889 0.98336 1.21374 1.00863 0.91463 0.86840 1.47915 1.17580 1.57254 1.13724 1.21805 0.84162 0.96634 1.03161 1.18491 0.84564 0.77211 0.82434 1.90680 1.18418 1.48415 1.83745 1.19380 1.14485 0.99204 0.93260 1.20809 0.94794 0.94360 0.96710 1.20221 1.12782 1.02209 0.92971 1.20724 0.97305 0.95026 0.96135 1.21155 1.05361 0.98084 0.98296 1.17389 0.89414 0.91311 0.89561 1.20597 1.25889 1.01822 1.02690 0.90316 1.27104 0.92355 1.07291 0.91606 1.70370 1.29594 1.04618 1.36235 0.83653 0.77768 0.72418 0.77417 1.19696 1.19909 1.19874 0.93201 0.92346 0.92367 0.91570 0.92919 0.92971 0.92567 0.91193 0.92225 0.91796 0.89969 0.93558 0.92418 0.90244 0.88617 0.88960 0.88975 0.87541 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.50 16 2 C -0.09 -1.09 2.92 -90.62 -0.26 -1.35 16 3 C -0.15 -1.57 9.19 37.16 0.34 -1.22 16 4 C -0.13 -1.90 5.01 -26.73 -0.13 -2.04 16 5 C 0.12 1.84 5.18 -4.04 -0.02 1.82 16 6 N -0.63 -11.66 2.87 -182.84 -0.53 -12.18 16 7 C 0.09 1.29 9.02 59.85 0.54 1.83 16 8 C 0.58 13.70 6.60 -12.52 -0.08 13.62 16 9 O -0.54 -14.46 15.27 5.27 0.08 -14.38 16 10 C -0.26 -6.34 5.03 -104.37 -0.53 -6.87 16 11 C -0.05 -1.03 7.68 -39.22 -0.30 -1.33 16 12 C -0.26 -5.54 10.03 -39.37 -0.39 -5.93 16 13 C -0.07 -1.63 10.01 -39.60 -0.40 -2.02 16 14 C -0.21 -5.25 7.96 -38.88 -0.31 -5.56 16 15 C 0.13 3.39 5.21 -106.54 -0.56 2.83 16 16 C -0.48 -13.24 7.73 -37.82 -0.29 -13.53 16 17 H 0.08 2.22 7.14 -52.49 -0.37 1.85 16 18 C 0.04 1.03 4.95 -17.30 -0.09 0.94 16 19 N -0.79 -21.22 12.46 55.56 0.69 -20.53 16 20 Si 1.06 22.36 30.00 -169.99 -5.10 17.26 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.08 1.42 5.78 -51.93 -0.30 1.12 16 35 H 0.05 0.63 7.06 -51.93 -0.37 0.26 16 36 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 37 H 0.08 1.33 6.09 -51.93 -0.32 1.01 16 38 H 0.10 1.79 6.08 -52.49 -0.32 1.47 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.11 2.72 6.82 -52.49 -0.36 2.36 16 42 H 0.30 8.35 6.78 -40.82 -0.28 8.08 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -29.86 337.07 -8.43 -38.29 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.51 Total: 6.78 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.15 Total: -20.32 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.17 Total: -32.71 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.10 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.86 -8.43 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600993183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.508 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds