Wall clock time and date at job start Mon Mar 30 2020 02:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.53003 * 109.47257 * 240.00209 * 2 1 3 5 5 C 1.52999 * 109.47248 * 119.99791 * 2 1 3 6 6 C 1.52995 * 109.47191 * 60.00480 * 5 2 1 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08996 * 109.46871 * 299.99813 * 1 2 3 25 25 H 1.08998 * 109.47328 * 60.00250 * 1 2 3 26 26 H 1.09009 * 109.46461 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47000 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47249 * 60.00127 * 3 2 1 30 30 H 1.08997 * 109.46758 * 299.99415 * 4 2 1 31 31 H 1.08999 * 109.46836 * 59.99356 * 4 2 1 32 32 H 1.08992 * 109.47022 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.46806 * 300.00170 * 5 2 1 34 34 H 1.09005 * 109.47011 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 2 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 2 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 7 2.0190 -2.8544 2.4451 8 6 1.6932 -4.1447 2.6585 9 8 0.9937 -4.7356 1.8582 10 6 2.1847 -4.8397 3.8623 11 6 3.0416 -4.1906 4.7471 12 6 3.5047 -4.8478 5.8715 13 6 3.1194 -6.1549 6.1367 14 6 2.2691 -6.8206 5.2839 15 6 1.7842 -6.1746 4.1319 16 6 0.9136 -6.8475 3.2520 17 1 0.1378 -6.3006 2.7368 18 6 1.0543 -8.2278 3.0453 19 7 2.1782 -8.8218 3.3458 20 14 -0.3654 -9.2162 2.3404 21 1 -1.2158 -9.7204 3.4485 22 1 -1.1770 -8.3498 1.4484 23 1 0.1681 -10.3642 1.5641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2073 2.1392 34 1 3.1301 -0.7208 1.2494 35 1 1.8936 -2.6775 0.3593 36 1 0.4401 -2.1638 1.2493 37 1 2.5772 -2.3832 3.0832 38 1 3.3489 -3.1737 4.5521 39 1 4.1727 -4.3393 6.5507 40 1 3.4903 -6.6536 7.0200 41 1 1.9744 -7.8372 5.4985 42 1 2.9398 -8.2985 3.6408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600995874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:57 Heat of formation + Delta-G solvation = -48.979275 kcal Electronic energy + Delta-G solvation = -21130.815948 eV Core-core repulsion = 18074.218278 eV Total energy + Delta-G solvation = -3056.597669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.16012 -38.05540 -36.79881 -34.19456 -33.54851 -30.36608 -29.46152 -28.49955 -27.40462 -27.37288 -25.23898 -23.40474 -21.90877 -20.84319 -19.62625 -18.62980 -18.00229 -16.34669 -15.63550 -15.25124 -14.73973 -14.45769 -14.27886 -14.19243 -14.02427 -13.60381 -13.45445 -13.13273 -12.59563 -12.50033 -12.12163 -12.06190 -11.79592 -11.78004 -11.76799 -11.23960 -11.11458 -10.89822 -10.76935 -10.72899 -10.61290 -10.54406 -10.36037 -10.13936 -9.59177 -9.06236 -8.47407 -8.32361 -7.77422 -7.59252 -7.12712 -4.44546 2.26047 2.74537 3.21004 3.32118 3.43015 3.94184 4.05657 4.10139 4.65681 4.67772 4.69295 4.74763 5.27296 5.29404 5.40923 5.48085 5.52032 5.58052 5.66673 5.67101 5.76962 5.87468 5.87754 5.94860 5.97650 6.05166 6.12194 6.13826 6.21585 6.35699 6.36474 6.54439 6.73017 7.00497 7.17064 7.29634 7.50729 7.62794 7.73494 7.90686 8.11356 8.23397 8.41308 8.75219 8.88164 9.39921 10.05915 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.004660 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.860223 B = 6006.755837 C = 7217.931772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.120 4.120 6 C 0.122 3.878 7 N -0.750 5.750 8 C 0.562 3.438 9 O -0.538 6.538 10 C -0.265 4.265 11 C -0.044 4.044 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.202 4.202 15 C 0.121 3.879 16 C -0.467 4.467 17 H 0.106 0.894 18 C 0.031 3.969 19 N -0.795 5.795 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.390 0.610 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 13.930 -4.084 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.204 4.204 5 C -0.158 4.158 6 C -0.002 4.002 7 N -0.405 5.405 8 C 0.356 3.644 9 O -0.417 6.417 10 C -0.270 4.270 11 C -0.063 4.063 12 C -0.279 4.279 13 C -0.095 4.095 14 C -0.221 4.221 15 C 0.116 3.884 16 C -0.494 4.494 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.418 5.418 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.198 1.198 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.224 0.776 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.964 11.927 -5.091 13.003 hybrid contribution 1.030 1.918 0.890 2.352 sum 0.065 13.845 -4.200 14.468 Atomic orbital electron populations 1.21967 0.94474 1.02458 1.01489 1.20467 0.95854 0.95198 0.95069 1.21866 1.00896 0.95356 1.01604 1.21967 1.00983 1.00866 0.96593 1.21847 1.00963 0.95146 0.97872 1.21297 0.99074 0.91076 0.88794 1.46035 1.56099 1.12975 1.25385 1.18372 0.79696 0.80127 0.86202 1.90673 1.38308 1.65187 1.47486 1.19427 1.10256 0.98901 0.98438 1.20720 0.95059 0.96613 0.93878 1.20238 1.09872 0.96522 1.01315 1.20742 0.96667 0.94458 0.97603 1.21253 1.04123 1.00516 0.96170 1.17510 0.89146 0.90366 0.91346 1.21213 1.12978 0.94850 1.20348 0.87659 1.27265 1.01457 0.96147 0.94173 1.70359 1.02374 1.41975 1.27101 0.83523 0.74036 0.75564 0.77266 1.20059 1.19751 1.20154 0.92688 0.92820 0.91872 0.92719 0.92713 0.92719 0.91860 0.92824 0.92679 0.91509 0.91510 0.92039 0.92036 0.77603 0.89134 0.88922 0.88897 0.87544 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.12 37.16 0.30 -1.16 16 2 C -0.07 -0.65 0.80 -154.50 -0.12 -0.77 16 3 C -0.14 -1.17 8.47 37.16 0.31 -0.86 16 4 C -0.15 -1.48 8.12 37.16 0.30 -1.18 16 5 C -0.12 -1.36 4.38 -26.73 -0.12 -1.48 16 6 C 0.12 1.86 4.97 -4.05 -0.02 1.84 16 7 N -0.75 -13.56 5.51 -61.38 -0.34 -13.90 16 8 C 0.56 13.29 7.73 -12.52 -0.10 13.19 16 9 O -0.54 -14.51 13.56 5.27 0.07 -14.44 16 10 C -0.27 -6.55 5.92 -104.36 -0.62 -7.17 16 11 C -0.04 -0.93 9.53 -39.22 -0.37 -1.31 16 12 C -0.26 -5.49 10.03 -39.37 -0.39 -5.89 16 13 C -0.08 -1.69 10.01 -39.59 -0.40 -2.09 16 14 C -0.20 -5.07 7.87 -38.88 -0.31 -5.38 16 15 C 0.12 3.25 5.17 -106.54 -0.55 2.70 16 16 C -0.47 -13.01 7.65 -37.81 -0.29 -13.30 16 17 H 0.11 3.07 5.92 -52.49 -0.31 2.76 16 18 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 19 N -0.79 -21.51 12.57 55.56 0.70 -20.81 16 20 Si 1.07 22.83 29.98 -169.99 -5.10 17.73 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.71 6.43 -51.92 -0.33 0.38 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.01 6.43 -51.93 -0.33 0.68 16 36 H 0.06 1.00 6.43 -51.93 -0.33 0.66 16 37 H 0.39 6.07 6.51 -40.82 -0.27 5.80 16 38 H 0.09 1.59 6.41 -52.48 -0.34 1.25 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.73 6.94 -52.49 -0.36 2.36 16 42 H 0.30 8.26 6.55 -40.82 -0.27 7.99 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -29.98 334.21 -8.41 -38.39 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.33 Total: 10.09 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.46 Total: -22.10 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.36 Total: -34.71 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.07 Total: -14.44 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.98 -8.41 -38.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600995874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.593 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds