Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46751 * 2 1 4 4 C 1.53003 * 109.47257 * 240.00209 * 2 1 3 5 5 C 1.52999 * 109.47248 * 119.99791 * 2 1 3 6 6 C 1.52995 * 109.47191 * 60.00480 * 5 2 1 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.08996 * 109.46871 * 299.99813 * 1 2 3 25 25 H 1.08998 * 109.47328 * 60.00250 * 1 2 3 26 26 H 1.09009 * 109.46461 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46781 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47000 * 299.99950 * 3 2 1 29 29 H 1.09004 * 109.47249 * 60.00127 * 3 2 1 30 30 H 1.08997 * 109.46758 * 299.99415 * 4 2 1 31 31 H 1.08999 * 109.46836 * 59.99356 * 4 2 1 32 32 H 1.08992 * 109.47022 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.46806 * 300.00170 * 5 2 1 34 34 H 1.09005 * 109.47011 * 180.02562 * 5 2 1 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 2 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 2 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2493 6 6 1.5302 -2.1637 1.2493 7 7 2.0190 -2.8544 2.4451 8 6 1.6932 -4.1447 2.6585 9 8 0.9937 -4.7356 1.8582 10 6 2.1847 -4.8397 3.8623 11 6 3.0416 -4.1906 4.7471 12 6 3.5047 -4.8478 5.8715 13 6 3.1194 -6.1549 6.1367 14 6 2.2691 -6.8206 5.2839 15 6 1.7842 -6.1746 4.1319 16 6 0.9136 -6.8475 3.2520 17 1 0.1378 -6.3006 2.7368 18 6 1.0543 -8.2278 3.0453 19 7 2.1782 -8.8218 3.3458 20 14 -0.3654 -9.2162 2.3404 21 1 -1.2158 -9.7204 3.4485 22 1 -1.1770 -8.3498 1.4484 23 1 0.1681 -10.3642 1.5641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -0.2073 2.1392 34 1 3.1301 -0.7208 1.2494 35 1 1.8936 -2.6775 0.3593 36 1 0.4401 -2.1638 1.2493 37 1 2.5772 -2.3832 3.0832 38 1 3.3489 -3.1737 4.5521 39 1 4.1727 -4.3393 6.5507 40 1 3.4903 -6.6536 7.0200 41 1 1.9744 -7.8372 5.4985 42 1 2.9398 -8.2985 3.6408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600995874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = -66.105830 kcal Electronic energy + Delta-G solvation = -21131.558611 eV Core-core repulsion = 18074.218278 eV Total energy + Delta-G solvation = -3057.340332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86643 -39.26468 -38.45409 -35.99919 -35.21193 -32.09184 -31.30178 -29.84349 -28.18082 -28.14127 -27.11950 -24.84572 -23.51145 -22.65970 -21.30469 -20.02610 -19.46394 -18.03127 -17.10157 -16.53205 -16.49810 -15.94814 -15.82506 -15.47963 -15.33947 -15.17356 -14.66815 -14.58396 -14.27837 -13.89481 -13.68975 -13.33142 -12.95434 -12.85947 -12.70069 -12.65743 -12.55438 -12.49571 -12.23328 -12.06818 -11.95139 -11.65787 -11.49843 -11.45470 -11.37084 -10.96350 -10.35324 -9.97453 -9.60714 -9.50082 -9.10735 -6.47085 0.39603 0.89966 1.45064 1.61243 1.76143 2.25102 2.30175 2.44286 2.73677 3.55618 3.77602 3.87190 3.89158 4.19893 4.28010 4.28201 4.34359 4.45005 4.58018 4.64880 4.75903 4.77151 4.84492 4.87590 4.92741 5.02102 5.04551 5.09550 5.11006 5.14756 5.20501 5.37165 5.42644 5.49103 5.50990 5.61523 5.65994 5.71431 5.89431 5.96445 6.20151 6.33294 6.69413 6.85345 6.92959 7.61241 8.03687 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.004660 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.860223 B = 6006.755837 C = 7217.931772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.147 4.147 5 C -0.110 4.110 6 C 0.121 3.879 7 N -0.729 5.729 8 C 0.555 3.445 9 O -0.582 6.582 10 C -0.285 4.285 11 C -0.042 4.042 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.096 3.904 16 C -0.512 4.512 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.818 5.818 20 Si 1.118 2.882 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.266 1.266 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.406 0.594 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 16.706 -3.066 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.192 4.192 4 C -0.205 4.205 5 C -0.147 4.147 6 C -0.002 4.002 7 N -0.383 5.383 8 C 0.348 3.652 9 O -0.464 6.464 10 C -0.290 4.290 11 C -0.060 4.060 12 C -0.262 4.262 13 C -0.090 4.090 14 C -0.246 4.246 15 C 0.092 3.908 16 C -0.540 4.540 17 H 0.097 0.903 18 C -0.218 4.218 19 N -0.442 5.442 20 Si 0.935 3.065 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.191 1.191 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.243 0.757 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.375 14.760 -4.044 15.308 hybrid contribution 0.751 1.314 0.669 1.654 sum 1.125 16.073 -3.374 16.462 Atomic orbital electron populations 1.21970 0.94736 1.01329 1.02401 1.20476 0.95644 0.96250 0.94049 1.21820 1.01258 0.93745 1.02423 1.21971 1.01260 0.99786 0.97455 1.21813 1.01568 0.92062 0.99288 1.21447 0.98480 0.93335 0.86960 1.45818 1.55000 1.11213 1.26242 1.18479 0.79392 0.81664 0.85709 1.90654 1.40259 1.66715 1.48735 1.19843 1.10857 0.98644 0.99651 1.21164 0.93393 0.98525 0.92953 1.20823 1.08529 0.95754 1.01134 1.21170 0.95004 0.95145 0.97709 1.21212 1.06158 1.00331 0.96856 1.17905 0.89370 0.91826 0.91707 1.21126 1.14461 0.95860 1.22584 0.90320 1.28465 1.02855 0.96842 0.93601 1.70469 1.02383 1.41358 1.29964 0.82993 0.71696 0.74491 0.77320 1.17852 1.20100 1.19090 0.92116 0.91626 0.94002 0.92115 0.91841 0.92036 0.94038 0.91615 0.92216 0.90209 0.90329 0.93463 0.93250 0.75728 0.84630 0.84435 0.85686 0.89255 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.12 71.98 0.58 -2.16 16 2 C -0.06 -1.13 0.80 -52.18 -0.04 -1.17 16 3 C -0.14 -1.82 8.47 71.98 0.61 -1.21 16 4 C -0.15 -2.80 8.12 71.98 0.58 -2.21 16 5 C -0.11 -2.22 4.38 30.59 0.13 -2.08 16 6 C 0.12 3.67 4.97 86.38 0.43 4.09 16 7 N -0.73 -25.57 5.51 -466.37 -2.57 -28.14 16 8 C 0.55 26.67 7.73 86.67 0.67 27.34 16 9 O -0.58 -33.05 13.56 -4.06 -0.06 -33.10 16 10 C -0.29 -14.09 5.92 -19.70 -0.12 -14.20 16 11 C -0.04 -1.65 9.53 22.50 0.21 -1.44 16 12 C -0.24 -9.24 10.03 22.41 0.22 -9.02 16 13 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 14 C -0.23 -11.60 7.87 22.72 0.18 -11.42 16 15 C 0.10 5.35 5.17 -21.11 -0.11 5.24 16 16 C -0.51 -30.32 7.65 23.41 0.18 -30.14 16 17 H 0.08 4.96 5.92 -2.91 -0.02 4.94 16 18 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 19 N -0.82 -46.42 12.57 21.88 0.28 -46.15 16 20 Si 1.12 48.14 29.98 68.60 2.06 50.19 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.95 6.43 -2.38 -0.02 0.93 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.04 0.96 6.43 -2.39 -0.02 0.94 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.05 1.59 6.43 -2.38 -0.02 1.57 16 36 H 0.05 1.64 6.43 -2.38 -0.02 1.62 16 37 H 0.41 11.41 6.51 -92.71 -0.60 10.80 16 38 H 0.14 4.06 6.41 -2.91 -0.02 4.04 16 39 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.09 4.79 6.94 -2.91 -0.02 4.77 16 42 H 0.28 16.52 6.55 -92.71 -0.61 15.91 16 Total: -1.00 -69.90 334.21 4.47 -65.43 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.57 Total: 32.68 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 4.20 Total: -40.90 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.29 Total: -74.29 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.06 Total: -33.10 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.06 Total: 50.19 kcal Total: -69.90 4.47 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600995874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds