Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00242 * 2 1 4 4 C 1.53000 * 109.47244 * 270.00174 * 3 2 1 5 5 C 1.52992 * 109.47385 * 59.99810 * 4 3 2 6 6 C 1.53005 * 109.46825 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46975 * 299.99535 * 4 3 2 8 8 C 1.34776 * 119.99767 * 179.97438 * 2 1 3 9 9 O 1.21607 * 120.00020 * 184.28468 * 8 2 1 10 10 C 1.47438 * 120.00350 * 4.28998 * 8 2 1 11 11 C 1.39227 * 120.27715 * 308.18016 * 10 8 2 12 12 C 1.38223 * 120.08623 * 180.28096 * 11 10 8 13 13 C 1.38827 * 120.67891 * 359.71383 * 12 11 10 14 14 C 1.37601 * 120.57009 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.87813 * 359.97438 * 14 13 12 16 16 C 1.40893 * 120.32597 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99986 * 214.52140 * 16 15 14 18 18 C 1.40280 * 119.99884 * 34.52089 * 16 15 14 19 19 N 1.30621 * 120.00093 * 23.66065 * 18 16 15 20 20 Si 1.86799 * 119.99705 * 203.66216 * 18 16 15 21 21 H 1.48510 * 109.47104 * 269.99661 * 20 18 16 22 22 H 1.48499 * 109.47638 * 29.99616 * 20 18 16 23 23 H 1.48496 * 109.47312 * 150.00105 * 20 18 16 24 24 H 1.08993 * 109.47199 * 265.58542 * 1 2 3 25 25 H 1.09000 * 109.47028 * 25.58420 * 1 2 3 26 26 H 1.08999 * 109.46908 * 145.58265 * 1 2 3 27 27 H 1.09002 * 109.46961 * 29.99982 * 3 2 1 28 28 H 1.08999 * 109.47107 * 149.99399 * 3 2 1 29 29 H 1.09002 * 109.47073 * 60.00037 * 5 4 3 30 30 H 1.08996 * 109.47806 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47153 * 300.00296 * 5 4 3 32 32 H 1.08994 * 109.47735 * 59.99649 * 6 4 3 33 33 H 1.09006 * 109.46495 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.46537 * 299.99407 * 6 4 3 35 35 H 1.09003 * 109.46714 * 60.00223 * 7 4 3 36 36 H 1.08999 * 109.47177 * 180.02562 * 7 4 3 37 37 H 1.08999 * 109.46950 * 300.00514 * 7 4 3 38 38 H 1.07995 * 119.95858 * 359.97438 * 11 10 8 39 39 H 1.08003 * 119.65985 * 179.73746 * 12 11 10 40 40 H 1.08001 * 119.71411 * 180.02562 * 13 12 11 41 41 H 1.07994 * 120.06339 * 180.02562 * 14 13 12 42 42 H 0.96997 * 120.00111 * 4.44002 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 1.1158 1.8934 -2.1637 6 6 3.2182 3.0351 -1.4424 7 6 3.2795 0.6441 -2.1637 8 6 2.1389 -1.1672 0.0005 9 8 3.3524 -1.1687 0.0792 10 6 1.4048 -2.4423 -0.0944 11 6 0.3513 -2.7123 0.7749 12 6 -0.3304 -3.9114 0.6862 13 6 0.0193 -4.8560 -0.2691 14 6 1.0525 -4.6156 -1.1456 15 6 1.7625 -3.4028 -1.0764 16 6 2.8217 -3.1466 -1.9695 17 1 3.6803 -2.5800 -1.6406 18 6 2.7609 -3.6275 -3.2859 19 7 1.6040 -3.8898 -3.8327 20 14 4.3346 -3.8927 -4.2568 21 1 4.6789 -2.6485 -4.9910 22 1 5.4383 -4.2395 -3.3258 23 1 4.1377 -5.0006 -5.2257 24 1 -0.3633 -0.0791 1.0245 25 1 -0.3633 0.9269 -0.4438 26 1 -0.3633 -0.8478 -0.5809 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.5267 2.6530 -1.6499 30 1 1.2974 2.2076 -3.1915 31 1 0.5707 0.9494 -2.1637 32 1 4.1706 2.9044 -0.9287 33 1 3.3994 3.3500 -2.4701 34 1 2.6294 3.7949 -0.9284 35 1 2.7344 -0.2999 -2.1637 36 1 3.4616 0.9589 -3.1912 37 1 4.2318 0.5137 -1.6498 38 1 0.0696 -1.9859 1.5228 39 1 -1.1438 -4.1154 1.3668 40 1 -0.5242 -5.7876 -0.3248 41 1 1.3173 -5.3560 -1.8858 42 1 0.7847 -3.6918 -3.3528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601032180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -36.494430 kcal Electronic energy + Delta-G solvation = -22619.518072 eV Core-core repulsion = 19563.461786 eV Total energy + Delta-G solvation = -3056.056286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66974 -37.58768 -36.26312 -34.26996 -33.65214 -30.10930 -29.46059 -27.59166 -26.90782 -26.59045 -25.65193 -24.72930 -21.86853 -21.04660 -19.19448 -18.30952 -17.70840 -16.28303 -15.64615 -15.37821 -14.87486 -14.23562 -14.16796 -13.88225 -13.69672 -13.22568 -13.01833 -12.70493 -12.50760 -12.28203 -12.06523 -12.00600 -11.84890 -11.74613 -11.24176 -11.20332 -11.13475 -10.90803 -10.75010 -10.61812 -10.39495 -10.35929 -10.30355 -10.12160 -9.57935 -9.04412 -8.65582 -7.97850 -7.74490 -7.64431 -7.21540 -4.51691 2.39017 2.72918 3.16661 3.26117 3.38832 3.64664 3.91809 4.00548 4.53488 5.04326 5.06419 5.22242 5.36698 5.51324 5.56865 5.71949 5.75913 5.79627 5.87770 5.94533 5.99416 6.06051 6.14858 6.15178 6.19682 6.24303 6.35683 6.39076 6.45795 6.54487 6.69702 6.75860 6.98904 7.04949 7.16624 7.29958 7.51156 7.62650 7.71826 7.88228 8.03404 8.17692 8.23364 8.69900 8.81783 9.20373 10.00959 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.008864 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.296706 B = 3158.236964 C = 4533.994588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.621 5.621 3 C 0.129 3.871 4 C -0.085 4.085 5 C -0.140 4.140 6 C -0.136 4.136 7 C -0.138 4.138 8 C 0.590 3.410 9 O -0.545 6.545 10 C -0.254 4.254 11 C -0.049 4.049 12 C -0.256 4.256 13 C -0.077 4.077 14 C -0.203 4.203 15 C 0.132 3.868 16 C -0.507 4.507 17 H 0.097 0.903 18 C 0.040 3.960 19 N -0.792 5.792 20 Si 1.063 2.937 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.274 1.274 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 9.055 2.407 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.355 5.355 3 C 0.006 3.994 4 C -0.087 4.087 5 C -0.198 4.198 6 C -0.194 4.194 7 C -0.195 4.195 8 C 0.382 3.618 9 O -0.422 6.422 10 C -0.259 4.259 11 C -0.068 4.068 12 C -0.275 4.275 13 C -0.095 4.095 14 C -0.222 4.222 15 C 0.128 3.872 16 C -0.534 4.534 17 H 0.115 0.885 18 C -0.182 4.182 19 N -0.415 5.415 20 Si 0.886 3.114 21 H -0.201 1.201 22 H -0.198 1.198 23 H -0.199 1.199 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.158 8.496 0.970 8.629 hybrid contribution -0.907 0.542 1.498 1.833 sum -2.065 9.038 2.467 9.594 Atomic orbital electron populations 1.21853 0.80493 1.02808 1.00863 1.47738 1.06356 1.05602 1.75811 1.21369 0.97524 0.85003 0.95501 1.20963 0.95903 0.95641 0.96156 1.21941 0.96631 1.01595 0.99604 1.21799 0.99904 0.96140 1.01551 1.21887 1.00213 0.99070 0.98309 1.18336 0.86737 0.83180 0.73501 1.90638 1.14382 1.87377 1.49850 1.19440 1.02870 0.95399 1.08181 1.20707 0.93575 0.96061 0.96475 1.20240 1.05491 0.97096 1.04700 1.20732 0.96328 0.97314 0.95171 1.21158 1.00752 0.97578 1.02734 1.17407 0.90304 0.88909 0.90570 1.20882 1.04758 1.30846 0.96942 0.88493 1.27081 1.03357 0.91122 0.96679 1.70381 1.00118 1.31131 1.39821 0.83672 0.73793 0.78025 0.75872 1.20117 1.19760 1.19874 0.93763 0.91893 0.90377 0.91750 0.90297 0.93397 0.93142 0.91850 0.92673 0.92734 0.93130 0.90846 0.94037 0.92472 0.88814 0.88931 0.88977 0.87755 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 7.88 59.85 0.47 1.75 16 2 N -0.62 -11.31 2.40 -182.85 -0.44 -11.74 16 3 C 0.13 2.04 4.59 -4.04 -0.02 2.02 16 4 C -0.09 -1.28 0.84 -154.51 -0.13 -1.42 16 5 C -0.14 -1.96 7.24 37.15 0.27 -1.69 16 6 C -0.14 -1.67 8.47 37.16 0.31 -1.35 16 7 C -0.14 -2.56 7.21 37.16 0.27 -2.29 16 8 C 0.59 13.40 4.94 -12.51 -0.06 13.34 16 9 O -0.54 -13.86 13.46 5.27 0.07 -13.79 16 10 C -0.25 -6.07 4.83 -104.37 -0.50 -6.58 16 11 C -0.05 -1.05 7.85 -39.22 -0.31 -1.36 16 12 C -0.26 -5.33 10.03 -39.37 -0.39 -5.73 16 13 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 14 C -0.20 -5.00 8.04 -38.88 -0.31 -5.31 16 15 C 0.13 3.43 5.11 -106.54 -0.54 2.88 16 16 C -0.51 -13.49 8.02 -37.81 -0.30 -13.79 16 17 H 0.10 2.73 6.33 -52.48 -0.33 2.40 16 18 C 0.04 1.01 4.93 -17.30 -0.09 0.92 16 19 N -0.79 -20.50 12.67 55.56 0.70 -19.80 16 20 Si 1.06 22.23 30.00 -169.99 -5.10 17.13 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16 25 H 0.06 0.80 6.25 -51.93 -0.32 0.48 16 26 H 0.08 1.36 6.34 -51.93 -0.33 1.03 16 27 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.08 1.36 7.37 -51.93 -0.38 0.98 16 29 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.00 6.06 -51.93 -0.31 0.68 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 1.64 6.01 -51.93 -0.31 1.33 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.12 7.83 -51.93 -0.41 0.71 16 38 H 0.09 1.75 6.62 -52.49 -0.35 1.40 16 39 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.10 2.63 7.12 -52.49 -0.37 2.26 16 42 H 0.30 7.83 6.89 -40.82 -0.28 7.55 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -28.21 326.85 -7.95 -36.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.37 Total: 7.80 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.74 Total: -20.69 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.27 Total: -31.54 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.10 Total: 17.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.21 -7.95 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601032180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.338 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds