Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00242 * 2 1 4 4 C 1.53000 * 109.47244 * 270.00174 * 3 2 1 5 5 C 1.52992 * 109.47385 * 59.99810 * 4 3 2 6 6 C 1.53005 * 109.46825 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.46975 * 299.99535 * 4 3 2 8 8 C 1.34776 * 119.99767 * 179.97438 * 2 1 3 9 9 O 1.21607 * 120.00020 * 184.28468 * 8 2 1 10 10 C 1.47438 * 120.00350 * 4.28998 * 8 2 1 11 11 C 1.39227 * 120.27715 * 308.18016 * 10 8 2 12 12 C 1.38223 * 120.08623 * 180.28096 * 11 10 8 13 13 C 1.38827 * 120.67891 * 359.71383 * 12 11 10 14 14 C 1.37601 * 120.57009 * 0.02562 * 13 12 11 15 15 C 1.40706 * 119.87813 * 359.97438 * 14 13 12 16 16 C 1.40893 * 120.32597 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99986 * 214.52140 * 16 15 14 18 18 C 1.40280 * 119.99884 * 34.52089 * 16 15 14 19 19 N 1.30621 * 120.00093 * 23.66065 * 18 16 15 20 20 Si 1.86799 * 119.99705 * 203.66216 * 18 16 15 21 21 H 1.48510 * 109.47104 * 269.99661 * 20 18 16 22 22 H 1.48499 * 109.47638 * 29.99616 * 20 18 16 23 23 H 1.48496 * 109.47312 * 150.00105 * 20 18 16 24 24 H 1.08993 * 109.47199 * 265.58542 * 1 2 3 25 25 H 1.09000 * 109.47028 * 25.58420 * 1 2 3 26 26 H 1.08999 * 109.46908 * 145.58265 * 1 2 3 27 27 H 1.09002 * 109.46961 * 29.99982 * 3 2 1 28 28 H 1.08999 * 109.47107 * 149.99399 * 3 2 1 29 29 H 1.09002 * 109.47073 * 60.00037 * 5 4 3 30 30 H 1.08996 * 109.47806 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47153 * 300.00296 * 5 4 3 32 32 H 1.08994 * 109.47735 * 59.99649 * 6 4 3 33 33 H 1.09006 * 109.46495 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.46537 * 299.99407 * 6 4 3 35 35 H 1.09003 * 109.46714 * 60.00223 * 7 4 3 36 36 H 1.08999 * 109.47177 * 180.02562 * 7 4 3 37 37 H 1.08999 * 109.46950 * 300.00514 * 7 4 3 38 38 H 1.07995 * 119.95858 * 359.97438 * 11 10 8 39 39 H 1.08003 * 119.65985 * 179.73746 * 12 11 10 40 40 H 1.08001 * 119.71411 * 180.02562 * 13 12 11 41 41 H 1.07994 * 120.06339 * 180.02562 * 14 13 12 42 42 H 0.96997 * 120.00111 * 4.44002 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 1.1158 1.8934 -2.1637 6 6 3.2182 3.0351 -1.4424 7 6 3.2795 0.6441 -2.1637 8 6 2.1389 -1.1672 0.0005 9 8 3.3524 -1.1687 0.0792 10 6 1.4048 -2.4423 -0.0944 11 6 0.3513 -2.7123 0.7749 12 6 -0.3304 -3.9114 0.6862 13 6 0.0193 -4.8560 -0.2691 14 6 1.0525 -4.6156 -1.1456 15 6 1.7625 -3.4028 -1.0764 16 6 2.8217 -3.1466 -1.9695 17 1 3.6803 -2.5800 -1.6406 18 6 2.7609 -3.6275 -3.2859 19 7 1.6040 -3.8898 -3.8327 20 14 4.3346 -3.8927 -4.2568 21 1 4.6789 -2.6485 -4.9910 22 1 5.4383 -4.2395 -3.3258 23 1 4.1377 -5.0006 -5.2257 24 1 -0.3633 -0.0791 1.0245 25 1 -0.3633 0.9269 -0.4438 26 1 -0.3633 -0.8478 -0.5809 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.5267 2.6530 -1.6499 30 1 1.2974 2.2076 -3.1915 31 1 0.5707 0.9494 -2.1637 32 1 4.1706 2.9044 -0.9287 33 1 3.3994 3.3500 -2.4701 34 1 2.6294 3.7949 -0.9284 35 1 2.7344 -0.2999 -2.1637 36 1 3.4616 0.9589 -3.1912 37 1 4.2318 0.5137 -1.6498 38 1 0.0696 -1.9859 1.5228 39 1 -1.1438 -4.1154 1.3668 40 1 -0.5242 -5.7876 -0.3248 41 1 1.3173 -5.3560 -1.8858 42 1 0.7847 -3.6918 -3.3528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601032180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = -51.027082 kcal Electronic energy + Delta-G solvation = -22620.148255 eV Core-core repulsion = 19563.461786 eV Total energy + Delta-G solvation = -3056.686469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26944 -39.23716 -37.84616 -35.98092 -35.28277 -31.87400 -31.28269 -28.83200 -28.18421 -27.89070 -27.31448 -26.36324 -23.54952 -22.86957 -20.77481 -19.79852 -19.41783 -17.92401 -17.18893 -16.84656 -16.61305 -15.93321 -15.74100 -15.38099 -15.11021 -14.64779 -14.53570 -14.33421 -14.09269 -13.89973 -13.78226 -13.36073 -13.09729 -12.99951 -12.93968 -12.60599 -12.51594 -12.48195 -12.42181 -12.06430 -11.93578 -11.91260 -11.64908 -11.54601 -11.39324 -10.91287 -10.43407 -9.60474 -9.50301 -9.40931 -9.15399 -6.48594 0.57895 0.91001 1.41852 1.55521 1.72194 2.00760 2.25714 2.37094 2.66946 3.48884 3.80701 3.85869 4.02348 4.11550 4.23322 4.38209 4.41624 4.50328 4.60391 4.63144 4.73890 4.75433 4.80812 4.88703 4.90315 4.92284 4.93409 5.04718 5.09739 5.15780 5.18759 5.31310 5.42383 5.47989 5.51288 5.63910 5.75957 5.80459 5.91437 5.96154 6.17660 6.34461 6.56388 6.81363 6.88547 7.51379 8.03461 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.008864 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.296706 B = 3158.236964 C = 4533.994588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.125 3.875 4 C -0.083 4.083 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.130 4.130 8 C 0.583 3.417 9 O -0.586 6.586 10 C -0.267 4.267 11 C -0.049 4.049 12 C -0.240 4.240 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.105 3.895 16 C -0.539 4.539 17 H 0.068 0.932 18 C 0.011 3.989 19 N -0.810 5.810 20 Si 1.102 2.898 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.260 1.260 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 11.001 3.751 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C 0.003 3.997 4 C -0.084 4.084 5 C -0.193 4.193 6 C -0.187 4.187 7 C -0.188 4.188 8 C 0.376 3.624 9 O -0.467 6.467 10 C -0.272 4.272 11 C -0.067 4.067 12 C -0.258 4.258 13 C -0.095 4.095 14 C -0.244 4.244 15 C 0.101 3.899 16 C -0.568 4.568 17 H 0.086 0.914 18 C -0.206 4.206 19 N -0.433 5.433 20 Si 0.921 3.079 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.184 1.184 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.104 0.896 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.231 10.471 2.323 11.202 hybrid contribution -0.423 -0.023 1.269 1.338 sum -3.655 10.448 3.592 11.637 Atomic orbital electron populations 1.22040 0.78387 1.03552 1.02270 1.47728 1.07710 1.05146 1.73916 1.21608 0.97232 0.84622 0.96222 1.20966 0.96404 0.95758 0.95238 1.21900 0.95823 1.01393 1.00195 1.21739 0.99701 0.94827 1.02426 1.21790 0.99308 0.98588 0.99092 1.18319 0.86277 0.84320 0.73528 1.90606 1.16039 1.88086 1.51995 1.19836 1.03543 0.95877 1.07906 1.21067 0.92405 0.97059 0.96188 1.20761 1.05341 0.95908 1.03826 1.21102 0.95277 0.98852 0.94245 1.21119 1.02470 0.97078 1.03774 1.17739 0.90726 0.89921 0.91467 1.20726 1.04940 1.32935 0.98164 0.91423 1.28125 1.05199 0.90196 0.97096 1.70479 0.99887 1.33444 1.39516 0.83190 0.70833 0.78782 0.75119 1.18900 1.19830 1.18421 0.91239 0.88685 0.92784 0.87409 0.92347 0.89988 0.92828 0.94178 0.93164 0.92098 0.90182 0.95160 0.93449 0.94631 0.85531 0.84825 0.85977 0.89556 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 7.88 127.77 1.01 3.23 16 2 N -0.61 -21.73 2.40 -850.66 -2.04 -23.77 16 3 C 0.13 3.72 4.59 86.38 0.40 4.12 16 4 C -0.08 -2.37 0.84 -52.18 -0.04 -2.41 16 5 C -0.14 -3.45 7.24 71.98 0.52 -2.93 16 6 C -0.13 -2.82 8.47 71.98 0.61 -2.21 16 7 C -0.13 -5.06 7.21 71.98 0.52 -4.54 16 8 C 0.58 27.18 4.94 86.67 0.43 27.61 16 9 O -0.59 -31.48 13.46 -4.05 -0.05 -31.54 16 10 C -0.27 -12.97 4.83 -19.70 -0.10 -13.06 16 11 C -0.05 -1.97 7.85 22.50 0.18 -1.79 16 12 C -0.24 -9.22 10.03 22.41 0.22 -8.99 16 13 C -0.08 -3.24 10.01 22.26 0.22 -3.02 16 14 C -0.23 -11.41 8.04 22.72 0.18 -11.23 16 15 C 0.10 5.70 5.11 -21.11 -0.11 5.59 16 16 C -0.54 -30.77 8.02 23.42 0.19 -30.58 16 17 H 0.07 4.16 6.33 -2.91 -0.02 4.14 16 18 C 0.01 0.58 4.93 85.37 0.42 1.00 16 19 N -0.81 -44.13 12.67 21.88 0.28 -43.86 16 20 Si 1.10 47.06 30.00 68.60 2.06 49.12 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H 0.07 1.62 7.23 -2.39 -0.02 1.60 16 25 H 0.09 2.05 6.25 -2.39 -0.01 2.03 16 26 H 0.05 1.80 6.34 -2.39 -0.02 1.78 16 27 H 0.11 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.06 2.00 7.37 -2.39 -0.02 1.98 16 29 H 0.08 1.53 8.07 -2.39 -0.02 1.51 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.20 6.06 -2.39 -0.01 1.19 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.03 1.42 6.01 -2.39 -0.01 1.41 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.47 7.83 -2.39 -0.02 1.46 16 38 H 0.13 4.23 6.62 -2.91 -0.02 4.22 16 39 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 40 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.09 4.59 7.12 -2.91 -0.02 4.57 16 42 H 0.28 15.84 6.89 -92.71 -0.64 15.20 16 Total: -1.00 -67.29 326.85 6.02 -61.27 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 1.13 Total: 27.97 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.65 Total: -39.20 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -1.76 Total: -67.63 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.06 Total: 49.12 kcal Total: -67.29 6.02 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601032180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.242 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds