Wall clock time and date at job start Mon Mar 30 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.52992 * 109.46809 * 304.80077 * 3 2 1 5 5 C 1.53003 * 109.47134 * 296.54920 * 4 3 2 6 6 C 1.52998 * 109.47162 * 64.79888 * 3 2 1 7 7 N 1.46499 * 109.47245 * 64.99824 * 6 3 2 8 8 C 1.34773 * 120.00081 * 179.97438 * 7 6 3 9 9 O 1.21606 * 120.00267 * 0.02562 * 8 7 6 10 10 C 1.47436 * 120.00343 * 180.02562 * 8 7 6 11 11 C 1.39229 * 120.27788 * 353.61500 * 10 8 7 12 12 C 1.38225 * 120.09090 * 180.27707 * 11 10 8 13 13 C 1.38828 * 120.67507 * 359.70386 * 12 11 10 14 14 C 1.37605 * 120.56973 * 359.97438 * 13 12 11 15 15 C 1.40705 * 119.88149 * 0.02562 * 14 13 12 16 16 C 1.40886 * 120.32654 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00104 * 147.38957 * 16 15 14 18 18 C 1.40275 * 120.00207 * 327.38567 * 16 15 14 19 19 N 1.30637 * 119.99527 * 340.95635 * 18 16 15 20 20 Si 1.86791 * 120.00257 * 160.95965 * 18 16 15 21 21 H 1.48506 * 109.46990 * 270.00003 * 20 18 16 22 22 H 1.48500 * 109.47233 * 29.99807 * 20 18 16 23 23 H 1.48502 * 109.47440 * 150.00009 * 20 18 16 24 24 H 1.08995 * 109.47401 * 306.14546 * 1 2 3 25 25 H 1.09000 * 109.46721 * 66.13925 * 1 2 3 26 26 H 1.08998 * 109.47054 * 186.13914 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99332 * 2 1 3 28 28 H 1.09001 * 109.46531 * 119.99779 * 2 1 3 29 29 H 1.08995 * 109.46817 * 184.80032 * 3 2 1 30 30 H 1.08999 * 109.47898 * 56.55067 * 4 3 2 31 31 H 1.08999 * 109.47300 * 176.55589 * 4 3 2 32 32 H 1.09002 * 109.47156 * 306.07988 * 5 4 3 33 33 H 1.09006 * 109.46758 * 66.07741 * 5 4 3 34 34 H 1.08998 * 109.47475 * 186.07561 * 5 4 3 35 35 H 1.09000 * 109.47024 * 304.99975 * 6 3 2 36 36 H 1.09000 * 109.47250 * 185.00387 * 6 3 2 37 37 H 0.96999 * 120.00260 * 0.02562 * 7 6 3 38 38 H 1.07999 * 119.95679 * 0.02562 * 11 10 8 39 39 H 1.08000 * 119.66435 * 179.71949 * 12 11 10 40 40 H 1.08002 * 119.71725 * 180.02562 * 13 12 11 41 41 H 1.07997 * 120.05881 * 180.02562 * 14 13 12 42 42 H 0.96995 * 120.00362 * 353.62582 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4339 2.1977 -1.1845 5 6 1.9125 1.5640 -2.4922 6 6 1.6310 2.1281 1.3052 7 7 2.3067 1.4781 2.4308 8 6 2.0966 1.9173 3.6876 9 8 1.3457 2.8528 3.8872 10 6 2.7770 1.2635 4.8204 11 6 3.5320 0.1117 4.6159 12 6 4.1636 -0.5012 5.6817 13 6 4.0600 0.0229 6.9631 14 6 3.3264 1.1636 7.1954 15 6 2.6737 1.8069 6.1277 16 6 1.9197 2.9751 6.3550 17 1 1.8644 3.7389 5.5935 18 6 1.2406 3.1462 7.5704 19 7 0.9886 2.1128 8.3288 20 14 0.6966 4.8515 8.1045 21 1 1.7750 5.4876 8.9031 22 1 0.4151 5.6797 6.9044 23 1 -0.5328 4.7429 8.9304 24 1 -0.3634 0.6061 0.8298 25 1 -0.3633 0.4157 -0.9399 26 1 -0.3633 -1.0218 0.1099 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.1266 1.4437 -0.0860 30 1 0.3465 2.1442 -1.1315 31 1 1.7485 3.2407 -1.1498 32 1 3.0016 1.5197 -2.4973 33 1 1.5075 0.5555 -2.5768 34 1 1.5694 2.1651 -3.3343 35 1 0.5516 2.0488 1.4344 36 1 1.9161 3.1795 1.2682 37 1 2.9059 0.7321 2.2717 38 1 3.6210 -0.3056 3.6238 39 1 4.7438 -1.3970 5.5159 40 1 4.5603 -0.4685 7.7845 41 1 3.2517 1.5645 8.1954 42 1 1.1872 1.2181 8.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601040032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:00 Heat of formation + Delta-G solvation = -48.434616 kcal Electronic energy + Delta-G solvation = -21316.058500 eV Core-core repulsion = 18259.484449 eV Total energy + Delta-G solvation = -3056.574051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.22366 -37.85247 -36.63977 -34.08485 -33.22105 -31.17246 -30.15971 -29.38429 -27.99910 -25.29180 -24.30741 -23.39832 -21.94747 -20.85956 -19.51058 -19.05208 -18.03407 -16.46741 -15.93810 -15.21894 -15.08638 -14.70917 -14.12394 -14.10757 -13.87805 -13.66270 -13.25674 -13.01767 -12.79899 -12.54062 -12.20449 -12.13414 -11.95773 -11.67566 -11.54227 -11.23166 -11.11340 -10.88744 -10.73358 -10.56670 -10.49980 -10.41100 -10.36326 -10.13207 -9.58507 -9.08038 -8.47618 -8.31727 -7.77082 -7.60528 -7.12624 -4.44683 2.26879 2.74714 3.20807 3.32283 3.42708 3.96448 4.05297 4.10347 4.64970 4.73641 4.76686 4.82709 5.15299 5.22799 5.31432 5.48326 5.50655 5.61505 5.65639 5.75042 5.80023 5.88171 5.90649 5.93245 6.00589 6.10538 6.13665 6.20088 6.21190 6.29121 6.44389 6.56331 6.74001 7.01131 7.17158 7.29925 7.51451 7.62468 7.74158 7.90648 8.11127 8.23030 8.41281 8.75171 8.87652 9.40135 10.05080 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.004838 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.933554 B = 5785.989051 C = 6789.531964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.120 4.120 5 C -0.151 4.151 6 C 0.127 3.873 7 N -0.747 5.747 8 C 0.563 3.437 9 O -0.539 6.539 10 C -0.266 4.266 11 C -0.043 4.043 12 C -0.261 4.261 13 C -0.075 4.075 14 C -0.203 4.203 15 C 0.121 3.879 16 C -0.465 4.465 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.794 5.794 20 Si 1.072 2.928 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.390 0.610 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -2.568 -14.006 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.118 4.118 4 C -0.157 4.157 5 C -0.208 4.208 6 C 0.003 3.997 7 N -0.402 5.402 8 C 0.356 3.644 9 O -0.417 6.417 10 C -0.271 4.271 11 C -0.062 4.062 12 C -0.281 4.281 13 C -0.094 4.094 14 C -0.223 4.223 15 C 0.116 3.884 16 C -0.492 4.492 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.418 5.418 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.201 1.201 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.225 0.775 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.104 -1.077 -12.590 12.636 hybrid contribution 1.146 -1.511 -1.344 2.324 sum 1.250 -2.588 -13.933 14.227 Atomic orbital electron populations 1.21881 0.95869 1.01597 1.02019 1.21546 0.96441 0.95949 1.01754 1.21442 1.00511 0.95505 0.94387 1.21539 1.01145 0.99320 0.93739 1.21787 1.01163 1.00848 0.96996 1.21236 0.97518 0.96332 0.84614 1.46019 1.50198 1.37716 1.06265 1.18373 0.81131 0.82905 0.81948 1.90676 1.37798 1.28971 1.84262 1.19405 1.12201 1.00948 0.94527 1.20707 0.94818 0.94193 0.96492 1.20230 1.10776 1.03710 0.93360 1.20737 0.97377 0.95635 0.95659 1.21260 1.02947 0.98954 0.99097 1.17500 0.90279 0.90959 0.89671 1.21212 1.22670 1.02963 1.02318 0.87744 1.27272 0.93669 1.05914 0.92173 1.70349 1.31829 1.01935 1.37664 0.83531 0.77411 0.72694 0.76795 1.20053 1.19742 1.20143 0.92017 0.92637 0.93082 0.91967 0.91867 0.90833 0.91294 0.91875 0.92824 0.92576 0.92967 0.91896 0.92433 0.77548 0.89207 0.88962 0.88926 0.87455 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.11 37.16 0.34 -1.35 16 2 C -0.12 -1.26 5.23 -26.73 -0.14 -1.40 16 3 C -0.10 -1.11 2.22 -90.62 -0.20 -1.31 16 4 C -0.12 -1.15 5.05 -26.73 -0.14 -1.29 16 5 C -0.15 -1.23 9.48 37.16 0.35 -0.87 16 6 C 0.13 1.94 4.93 -4.04 -0.02 1.92 16 7 N -0.75 -13.33 5.18 -61.38 -0.32 -13.65 16 8 C 0.56 13.21 7.71 -12.52 -0.10 13.12 16 9 O -0.54 -14.49 13.59 5.27 0.07 -14.41 16 10 C -0.27 -6.54 5.92 -104.36 -0.62 -7.16 16 11 C -0.04 -0.92 9.51 -39.22 -0.37 -1.29 16 12 C -0.26 -5.53 10.03 -39.37 -0.39 -5.92 16 13 C -0.08 -1.68 10.01 -39.59 -0.40 -2.08 16 14 C -0.20 -5.13 7.85 -38.88 -0.31 -5.43 16 15 C 0.12 3.24 5.21 -106.54 -0.56 2.69 16 16 C -0.46 -12.93 7.67 -37.82 -0.29 -13.22 16 17 H 0.10 3.04 5.92 -52.49 -0.31 2.73 16 18 C 0.03 0.82 5.05 -17.29 -0.09 0.73 16 19 N -0.79 -21.45 12.48 55.56 0.69 -20.76 16 20 Si 1.07 22.80 29.98 -169.99 -5.10 17.70 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.06 0.78 6.20 -51.93 -0.32 0.46 16 25 H 0.05 0.52 6.64 -51.93 -0.34 0.18 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 28 H 0.06 0.73 7.08 -51.93 -0.37 0.36 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.67 6.29 -51.93 -0.33 0.34 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 6.95 -51.93 -0.36 0.08 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 1.02 6.22 -51.93 -0.32 0.70 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.39 6.06 5.73 -40.82 -0.23 5.82 16 38 H 0.09 1.58 6.45 -52.49 -0.34 1.24 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.76 6.80 -52.49 -0.36 2.40 16 42 H 0.30 8.26 6.52 -40.82 -0.27 8.00 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -29.80 330.22 -8.68 -38.48 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.09 Total: 10.55 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.92 Total: -22.88 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.38 Total: -34.41 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.10 Total: 17.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.80 -8.68 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.952 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds