Wall clock time and date at job start Mon Mar 30 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.52992 * 109.46809 * 304.80077 * 3 2 1 5 5 C 1.53003 * 109.47134 * 296.54920 * 4 3 2 6 6 C 1.52998 * 109.47162 * 64.79888 * 3 2 1 7 7 N 1.46499 * 109.47245 * 64.99824 * 6 3 2 8 8 C 1.34773 * 120.00081 * 179.97438 * 7 6 3 9 9 O 1.21606 * 120.00267 * 0.02562 * 8 7 6 10 10 C 1.47436 * 120.00343 * 180.02562 * 8 7 6 11 11 C 1.39229 * 120.27788 * 353.61500 * 10 8 7 12 12 C 1.38225 * 120.09090 * 180.27707 * 11 10 8 13 13 C 1.38828 * 120.67507 * 359.70386 * 12 11 10 14 14 C 1.37605 * 120.56973 * 359.97438 * 13 12 11 15 15 C 1.40705 * 119.88149 * 0.02562 * 14 13 12 16 16 C 1.40886 * 120.32654 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00104 * 147.38957 * 16 15 14 18 18 C 1.40275 * 120.00207 * 327.38567 * 16 15 14 19 19 N 1.30637 * 119.99527 * 340.95635 * 18 16 15 20 20 Si 1.86791 * 120.00257 * 160.95965 * 18 16 15 21 21 H 1.48506 * 109.46990 * 270.00003 * 20 18 16 22 22 H 1.48500 * 109.47233 * 29.99807 * 20 18 16 23 23 H 1.48502 * 109.47440 * 150.00009 * 20 18 16 24 24 H 1.08995 * 109.47401 * 306.14546 * 1 2 3 25 25 H 1.09000 * 109.46721 * 66.13925 * 1 2 3 26 26 H 1.08998 * 109.47054 * 186.13914 * 1 2 3 27 27 H 1.08997 * 109.47568 * 239.99332 * 2 1 3 28 28 H 1.09001 * 109.46531 * 119.99779 * 2 1 3 29 29 H 1.08995 * 109.46817 * 184.80032 * 3 2 1 30 30 H 1.08999 * 109.47898 * 56.55067 * 4 3 2 31 31 H 1.08999 * 109.47300 * 176.55589 * 4 3 2 32 32 H 1.09002 * 109.47156 * 306.07988 * 5 4 3 33 33 H 1.09006 * 109.46758 * 66.07741 * 5 4 3 34 34 H 1.08998 * 109.47475 * 186.07561 * 5 4 3 35 35 H 1.09000 * 109.47024 * 304.99975 * 6 3 2 36 36 H 1.09000 * 109.47250 * 185.00387 * 6 3 2 37 37 H 0.96999 * 120.00260 * 0.02562 * 7 6 3 38 38 H 1.07999 * 119.95679 * 0.02562 * 11 10 8 39 39 H 1.08000 * 119.66435 * 179.71949 * 12 11 10 40 40 H 1.08002 * 119.71725 * 180.02562 * 13 12 11 41 41 H 1.07997 * 120.05881 * 180.02562 * 14 13 12 42 42 H 0.96995 * 120.00362 * 353.62582 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4339 2.1977 -1.1845 5 6 1.9125 1.5640 -2.4922 6 6 1.6310 2.1281 1.3052 7 7 2.3067 1.4781 2.4308 8 6 2.0966 1.9173 3.6876 9 8 1.3457 2.8528 3.8872 10 6 2.7770 1.2635 4.8204 11 6 3.5320 0.1117 4.6159 12 6 4.1636 -0.5012 5.6817 13 6 4.0600 0.0229 6.9631 14 6 3.3264 1.1636 7.1954 15 6 2.6737 1.8069 6.1277 16 6 1.9197 2.9751 6.3550 17 1 1.8644 3.7389 5.5935 18 6 1.2406 3.1462 7.5704 19 7 0.9886 2.1128 8.3288 20 14 0.6966 4.8515 8.1045 21 1 1.7750 5.4876 8.9031 22 1 0.4151 5.6797 6.9044 23 1 -0.5328 4.7429 8.9304 24 1 -0.3634 0.6061 0.8298 25 1 -0.3633 0.4157 -0.9399 26 1 -0.3633 -1.0218 0.1099 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.1266 1.4437 -0.0860 30 1 0.3465 2.1442 -1.1315 31 1 1.7485 3.2407 -1.1498 32 1 3.0016 1.5197 -2.4973 33 1 1.5075 0.5555 -2.5768 34 1 1.5694 2.1651 -3.3343 35 1 0.5516 2.0488 1.4344 36 1 1.9161 3.1795 1.2682 37 1 2.9059 0.7321 2.2717 38 1 3.6210 -0.3056 3.6238 39 1 4.7438 -1.3970 5.5159 40 1 4.5603 -0.4685 7.7845 41 1 3.2517 1.5645 8.1954 42 1 1.1872 1.2181 8.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601040032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:00 Heat of formation + Delta-G solvation = -65.148717 kcal Electronic energy + Delta-G solvation = -21316.783278 eV Core-core repulsion = 18259.484449 eV Total energy + Delta-G solvation = -3057.298829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91175 -39.23718 -38.24663 -35.93897 -34.79725 -32.07106 -31.84523 -31.22613 -29.22106 -27.12695 -25.45705 -24.54123 -23.46903 -22.67901 -21.18585 -20.24006 -19.75669 -18.12023 -17.05298 -16.75816 -16.53482 -16.20827 -15.83514 -15.73021 -15.36436 -15.26731 -14.44985 -14.42800 -14.04736 -13.79025 -13.76795 -13.56118 -13.20889 -12.92981 -12.76406 -12.69606 -12.49957 -12.37361 -12.07139 -12.05686 -11.95248 -11.54523 -11.40999 -11.34563 -11.26477 -10.97869 -10.35755 -9.96858 -9.61013 -9.51264 -9.10476 -6.47080 0.40255 0.89911 1.45044 1.61498 1.76041 2.25475 2.29917 2.45536 2.73119 3.56399 3.75735 3.87297 3.94307 4.20902 4.27247 4.34584 4.39966 4.44710 4.54791 4.59002 4.69148 4.69773 4.85122 4.85954 4.89071 4.99301 5.05527 5.09809 5.14080 5.28085 5.29850 5.35895 5.42102 5.42268 5.58901 5.61486 5.66297 5.71646 5.89376 5.96228 6.19366 6.33221 6.69126 6.85107 6.92714 7.61609 8.02951 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.004838 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.933554 B = 5785.989051 C = 6789.531964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.119 4.119 5 C -0.146 4.146 6 C 0.125 3.875 7 N -0.724 5.724 8 C 0.556 3.444 9 O -0.583 6.583 10 C -0.285 4.285 11 C -0.041 4.041 12 C -0.245 4.245 13 C -0.071 4.071 14 C -0.228 4.228 15 C 0.095 3.905 16 C -0.510 4.510 17 H 0.078 0.922 18 C -0.002 4.002 19 N -0.817 5.817 20 Si 1.117 2.883 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.266 1.266 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.405 0.595 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -4.519 -16.114 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.157 4.157 5 C -0.204 4.204 6 C 0.002 3.998 7 N -0.378 5.378 8 C 0.348 3.652 9 O -0.464 6.464 10 C -0.290 4.290 11 C -0.060 4.060 12 C -0.264 4.264 13 C -0.090 4.090 14 C -0.247 4.247 15 C 0.091 3.909 16 C -0.538 4.538 17 H 0.096 0.904 18 C -0.218 4.218 19 N -0.441 5.441 20 Si 0.935 3.065 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.191 1.191 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.242 0.758 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.665 -3.075 -14.737 15.146 hybrid contribution 0.803 -1.102 -0.884 1.624 sum 2.468 -4.176 -15.621 16.357 Atomic orbital electron populations 1.21875 0.96249 1.01525 1.01705 1.21561 0.96077 0.95306 1.02531 1.21393 1.01219 0.95760 0.92283 1.21536 1.01013 0.99141 0.93980 1.21755 1.01463 1.01167 0.95974 1.21413 0.96629 0.96103 0.85688 1.45777 1.49502 1.37397 1.05127 1.18465 0.80690 0.82490 0.83506 1.90656 1.39671 1.30889 1.85226 1.19818 1.12723 1.02201 0.94263 1.21140 0.93242 0.92633 0.98973 1.20808 1.09090 1.04155 0.92320 1.21161 0.95916 0.94299 0.97619 1.21219 1.04663 1.00744 0.98117 1.17897 0.90306 0.91253 0.91401 1.21131 1.25761 1.03946 1.02947 0.90367 1.28475 0.92816 1.08558 0.91911 1.70458 1.34141 1.01414 1.38089 0.82994 0.77984 0.68914 0.76616 1.17858 1.20087 1.19083 0.94641 0.91201 0.92512 0.89512 0.92669 0.89722 0.91480 0.92231 0.92360 0.91867 0.92140 0.93198 0.93756 0.75800 0.84822 0.84511 0.85740 0.89164 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.11 71.98 0.66 -2.44 16 2 C -0.12 -2.15 5.23 30.60 0.16 -1.99 16 3 C -0.09 -1.77 2.22 -10.80 -0.02 -1.79 16 4 C -0.12 -2.05 5.05 30.59 0.15 -1.89 16 5 C -0.15 -1.91 9.48 71.98 0.68 -1.23 16 6 C 0.13 3.78 4.93 86.38 0.43 4.21 16 7 N -0.72 -25.28 5.18 -466.37 -2.42 -27.70 16 8 C 0.56 26.63 7.71 86.67 0.67 27.30 16 9 O -0.58 -33.02 13.59 -4.05 -0.06 -33.08 16 10 C -0.29 -14.09 5.92 -19.70 -0.12 -14.21 16 11 C -0.04 -1.64 9.51 22.51 0.21 -1.42 16 12 C -0.24 -9.34 10.03 22.41 0.22 -9.12 16 13 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 14 C -0.23 -11.72 7.85 22.72 0.18 -11.54 16 15 C 0.10 5.32 5.21 -21.11 -0.11 5.21 16 16 C -0.51 -30.15 7.67 23.41 0.18 -29.97 16 17 H 0.08 4.92 5.92 -2.91 -0.02 4.90 16 18 C 0.00 -0.13 5.05 85.37 0.43 0.30 16 19 N -0.82 -46.31 12.48 21.88 0.27 -46.04 16 20 Si 1.12 48.05 29.98 68.60 2.06 50.11 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 H 0.03 0.88 6.20 -2.39 -0.01 0.87 16 25 H 0.07 1.17 6.64 -2.39 -0.02 1.15 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.23 6.91 -2.39 -0.02 1.21 16 28 H 0.05 1.10 7.08 -2.39 -0.02 1.09 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.19 6.29 -2.39 -0.02 1.17 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.75 6.95 -2.38 -0.02 0.73 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 1.67 6.22 -2.39 -0.01 1.65 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.40 11.53 5.73 -92.71 -0.53 11.00 16 38 H 0.13 4.06 6.45 -2.91 -0.02 4.04 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 41 H 0.09 4.86 6.80 -2.91 -0.02 4.84 16 42 H 0.28 16.55 6.52 -92.71 -0.60 15.95 16 Total: -1.00 -69.54 330.22 4.46 -65.08 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.66 Total: 33.04 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 3.95 Total: -41.41 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -2.14 Total: -73.74 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.06 Total: -33.08 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.06 Total: 50.11 kcal Total: -69.54 4.46 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601040032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.067 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds