Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.52999 * 109.46836 * 59.99857 * 3 2 1 5 5 C 1.53002 * 109.47176 * 300.00028 * 3 2 1 6 6 C 1.52994 * 109.47398 * 179.97438 * 3 2 1 7 7 N 1.46500 * 109.47189 * 179.97438 * 6 3 2 8 8 C 1.34775 * 119.99983 * 179.97438 * 7 6 3 9 9 O 1.21616 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.47437 * 120.00283 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28103 * 355.71208 * 10 8 7 12 12 C 1.38223 * 120.09427 * 180.27969 * 11 10 8 13 13 C 1.38824 * 120.66869 * 359.69405 * 12 11 10 14 14 C 1.37596 * 120.57733 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.87781 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32254 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99729 * 216.32445 * 16 15 14 18 18 C 1.40272 * 120.00475 * 36.32620 * 16 15 14 19 19 N 1.30628 * 120.00173 * 190.50975 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 10.50597 * 18 16 15 21 21 H 1.48495 * 109.47236 * 267.22657 * 20 18 16 22 22 H 1.48498 * 109.46909 * 27.22603 * 20 18 16 23 23 H 1.48502 * 109.47265 * 147.22555 * 20 18 16 24 24 H 1.08999 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47030 * 300.00371 * 1 2 3 26 26 H 1.09001 * 109.47316 * 60.00042 * 1 2 3 27 27 H 1.09001 * 109.47351 * 240.00259 * 2 1 3 28 28 H 1.09001 * 109.47316 * 119.99957 * 2 1 3 29 29 H 1.09004 * 109.46980 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47288 * 299.99756 * 4 3 2 31 31 H 1.08996 * 109.47517 * 60.00273 * 4 3 2 32 32 H 1.09003 * 109.47136 * 300.00203 * 5 3 2 33 33 H 1.09007 * 109.47222 * 59.99627 * 5 3 2 34 34 H 1.09000 * 109.47346 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47209 * 60.00183 * 6 3 2 36 36 H 1.09001 * 109.47192 * 300.00044 * 6 3 2 37 37 H 0.97001 * 120.00283 * 0.02562 * 7 6 3 38 38 H 1.08004 * 119.95035 * 359.97438 * 11 10 8 39 39 H 1.07991 * 119.66384 * 179.72168 * 12 11 10 40 40 H 1.08003 * 119.70698 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.06224 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5700 1.4426 0.0006 7 7 4.0583 2.8238 0.0000 8 6 5.3833 3.0702 0.0010 9 8 6.1737 2.1459 0.0018 10 6 5.8748 4.4602 0.0009 11 6 4.9785 5.5217 -0.0900 12 6 5.4439 6.8232 -0.0955 13 6 6.8033 7.0895 -0.0047 14 6 7.7129 6.0617 0.0932 15 6 7.2651 4.7278 0.1010 16 6 8.1883 3.6682 0.2002 17 1 8.0157 2.7492 -0.3403 18 6 9.3316 3.8066 1.0010 19 7 10.2861 2.9172 0.9363 20 14 9.4893 5.2631 2.1601 21 1 10.2114 6.3650 1.4750 22 1 8.1362 5.7291 2.5563 23 1 10.2457 4.8529 3.3704 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8929 3.1916 1.2490 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.8933 1.6499 -2.1393 33 1 0.4400 2.1638 -1.2493 34 1 1.8937 3.1913 -1.2495 35 1 3.9337 0.9287 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.4279 3.5611 -0.0003 38 1 3.9184 5.3278 -0.1613 39 1 4.7429 7.6412 -0.1708 40 1 7.1499 8.1124 -0.0100 41 1 8.7686 6.2784 0.1639 42 1 11.0769 3.0131 1.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601529586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -35.799744 kcal Electronic energy + Delta-G solvation = -21482.433527 eV Core-core repulsion = 18426.407365 eV Total energy + Delta-G solvation = -3056.026162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.38363 -38.06201 -36.68348 -33.85334 -33.19786 -30.55570 -30.41962 -29.55893 -27.34096 -26.64117 -25.26691 -23.42726 -22.08447 -20.86787 -19.53698 -18.61988 -17.55354 -16.77568 -15.40760 -15.19580 -15.06634 -14.75961 -14.38370 -14.08825 -14.04982 -13.53619 -13.37790 -13.28620 -12.63569 -12.46923 -12.21584 -12.12803 -12.00009 -11.90522 -11.71778 -11.41808 -11.18494 -10.93702 -10.74751 -10.59149 -10.56347 -10.48582 -10.40129 -10.12891 -9.79247 -9.24116 -8.43616 -8.31985 -7.80000 -7.57179 -6.88235 -4.46489 2.12930 2.61533 3.09566 3.18455 3.29887 3.94213 3.99226 4.05633 4.62188 4.69381 4.76279 4.76811 5.18355 5.28673 5.37917 5.41408 5.53282 5.62518 5.73680 5.79788 5.81120 5.86035 5.91652 5.93160 6.01850 6.03766 6.04831 6.13314 6.17421 6.35233 6.38343 6.45939 6.53084 6.81283 7.10865 7.17434 7.25924 7.41113 7.60432 7.77893 8.03304 8.37438 8.50298 8.66293 8.89186 9.41794 10.08440 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004879 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.423481 B = 5736.965558 C = 6477.826361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.143 4.143 6 C 0.135 3.865 7 N -0.745 5.745 8 C 0.559 3.441 9 O -0.530 6.530 10 C -0.248 4.248 11 C -0.042 4.042 12 C -0.255 4.255 13 C -0.066 4.066 14 C -0.226 4.226 15 C 0.117 3.883 16 C -0.402 4.402 17 H 0.124 0.876 18 C 0.079 3.921 19 N -0.794 5.794 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.243 1.243 23 H -0.289 1.289 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.390 0.610 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 -0.258 -0.178 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.077 4.077 4 C -0.201 4.201 5 C -0.200 4.200 6 C 0.011 3.989 7 N -0.401 5.401 8 C 0.352 3.648 9 O -0.407 6.407 10 C -0.253 4.253 11 C -0.061 4.061 12 C -0.274 4.274 13 C -0.084 4.084 14 C -0.245 4.245 15 C 0.112 3.888 16 C -0.429 4.429 17 H 0.142 0.858 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.166 1.166 23 H -0.216 1.216 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.504 -1.118 -0.119 14.547 hybrid contribution -0.073 1.009 0.541 1.147 sum -14.577 -0.108 0.422 14.583 Atomic orbital electron populations 1.21872 0.95866 1.01335 1.02024 1.21497 0.95856 0.95259 1.02334 1.20809 0.94700 0.96036 0.96162 1.21925 1.00702 1.00459 0.96973 1.21924 1.00713 1.00429 0.96954 1.21175 0.91527 0.84478 1.01710 1.46028 1.07558 1.07310 1.79230 1.18348 0.80834 0.89719 0.75865 1.90725 1.54276 1.46313 1.49406 1.19437 0.93851 0.90720 1.21319 1.20763 0.96539 0.92953 0.95820 1.20273 0.94903 0.95290 1.16964 1.20731 0.93533 0.97207 0.96962 1.21152 0.97999 0.93247 1.12130 1.17551 0.90872 0.92085 0.88270 1.20206 0.99145 1.02338 1.21184 0.85830 1.26379 0.93558 0.96883 0.97318 1.69571 1.05608 1.33462 1.33056 0.86393 0.80515 0.80731 0.79080 1.19435 1.16580 1.21617 0.93040 0.92455 0.92466 0.91749 0.91738 0.92528 0.92382 0.92458 0.92479 0.92371 0.92549 0.92231 0.92185 0.77437 0.88864 0.88582 0.88608 0.87802 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.21 37.16 0.34 -0.90 16 2 C -0.11 -1.08 4.99 -26.73 -0.13 -1.22 16 3 C -0.08 -0.85 0.56 -154.51 -0.09 -0.93 16 4 C -0.14 -1.50 7.95 37.16 0.30 -1.20 16 5 C -0.14 -1.47 7.95 37.16 0.30 -1.18 16 6 C 0.14 2.06 4.56 -4.04 -0.02 2.04 16 7 N -0.75 -13.00 4.91 -61.38 -0.30 -13.30 16 8 C 0.56 12.90 7.72 -12.51 -0.10 12.80 16 9 O -0.53 -14.32 13.53 5.26 0.07 -14.25 16 10 C -0.25 -5.89 5.92 -104.37 -0.62 -6.51 16 11 C -0.04 -0.84 9.52 -39.22 -0.37 -1.22 16 12 C -0.25 -5.04 10.03 -39.37 -0.39 -5.44 16 13 C -0.07 -1.38 10.01 -39.60 -0.40 -1.77 16 14 C -0.23 -5.41 7.00 -38.88 -0.27 -5.68 16 15 C 0.12 3.05 5.03 -106.55 -0.54 2.51 16 16 C -0.40 -11.43 8.31 -37.82 -0.31 -11.74 16 17 H 0.12 3.89 5.96 -52.48 -0.31 3.58 16 18 C 0.08 2.13 5.47 -17.30 -0.09 2.04 16 19 N -0.79 -21.80 13.92 55.56 0.77 -21.03 16 20 Si 0.91 20.96 24.52 -169.99 -4.17 16.79 16 21 H -0.27 -5.89 6.76 56.52 0.38 -5.51 16 22 H -0.24 -5.75 6.73 56.52 0.38 -5.36 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 26 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 6.86 -51.93 -0.36 0.26 16 30 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.61 6.86 -51.93 -0.36 0.25 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.39 5.85 4.21 -40.82 -0.17 5.68 16 38 H 0.09 1.53 6.42 -52.48 -0.34 1.19 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 41 H 0.10 2.44 5.01 -52.49 -0.26 2.18 16 42 H 0.29 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -30.19 324.15 -7.25 -37.45 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.11 Total: 7.87 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.40 Total: -18.41 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.47 Total: -34.33 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.07 Total: -14.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.19 -7.25 -37.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601529586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.646 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds