Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47132 * 2 1 4 4 C 1.52999 * 109.46836 * 59.99857 * 3 2 1 5 5 C 1.53002 * 109.47176 * 300.00028 * 3 2 1 6 6 C 1.52994 * 109.47398 * 179.97438 * 3 2 1 7 7 N 1.46500 * 109.47189 * 179.97438 * 6 3 2 8 8 C 1.34775 * 119.99983 * 179.97438 * 7 6 3 9 9 O 1.21616 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.47437 * 120.00283 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28103 * 355.71208 * 10 8 7 12 12 C 1.38223 * 120.09427 * 180.27969 * 11 10 8 13 13 C 1.38824 * 120.66869 * 359.69405 * 12 11 10 14 14 C 1.37596 * 120.57733 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.87781 * 0.02562 * 14 13 12 16 16 C 1.40885 * 120.32254 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99729 * 216.32445 * 16 15 14 18 18 C 1.40272 * 120.00475 * 36.32620 * 16 15 14 19 19 N 1.30628 * 120.00173 * 190.50975 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 10.50597 * 18 16 15 21 21 H 1.48495 * 109.47236 * 267.22657 * 20 18 16 22 22 H 1.48498 * 109.46909 * 27.22603 * 20 18 16 23 23 H 1.48502 * 109.47265 * 147.22555 * 20 18 16 24 24 H 1.08999 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47030 * 300.00371 * 1 2 3 26 26 H 1.09001 * 109.47316 * 60.00042 * 1 2 3 27 27 H 1.09001 * 109.47351 * 240.00259 * 2 1 3 28 28 H 1.09001 * 109.47316 * 119.99957 * 2 1 3 29 29 H 1.09004 * 109.46980 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47288 * 299.99756 * 4 3 2 31 31 H 1.08996 * 109.47517 * 60.00273 * 4 3 2 32 32 H 1.09003 * 109.47136 * 300.00203 * 5 3 2 33 33 H 1.09007 * 109.47222 * 59.99627 * 5 3 2 34 34 H 1.09000 * 109.47346 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47209 * 60.00183 * 6 3 2 36 36 H 1.09001 * 109.47192 * 300.00044 * 6 3 2 37 37 H 0.97001 * 120.00283 * 0.02562 * 7 6 3 38 38 H 1.08004 * 119.95035 * 359.97438 * 11 10 8 39 39 H 1.07991 * 119.66384 * 179.72168 * 12 11 10 40 40 H 1.08003 * 119.70698 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.06224 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1638 -1.2492 6 6 3.5700 1.4426 0.0006 7 7 4.0583 2.8238 0.0000 8 6 5.3833 3.0702 0.0010 9 8 6.1737 2.1459 0.0018 10 6 5.8748 4.4602 0.0009 11 6 4.9785 5.5217 -0.0900 12 6 5.4439 6.8232 -0.0955 13 6 6.8033 7.0895 -0.0047 14 6 7.7129 6.0617 0.0932 15 6 7.2651 4.7278 0.1010 16 6 8.1883 3.6682 0.2002 17 1 8.0157 2.7492 -0.3403 18 6 9.3316 3.8066 1.0010 19 7 10.2861 2.9172 0.9363 20 14 9.4893 5.2631 2.1601 21 1 10.2114 6.3650 1.4750 22 1 8.1362 5.7291 2.5563 23 1 10.2457 4.8529 3.3704 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8929 3.1916 1.2490 30 1 0.4400 2.1638 1.2492 31 1 1.8933 1.6500 2.1392 32 1 1.8933 1.6499 -2.1393 33 1 0.4400 2.1638 -1.2493 34 1 1.8937 3.1913 -1.2495 35 1 3.9337 0.9287 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.4279 3.5611 -0.0003 38 1 3.9184 5.3278 -0.1613 39 1 4.7429 7.6412 -0.1708 40 1 7.1499 8.1124 -0.0100 41 1 8.7686 6.2784 0.1639 42 1 11.0769 3.0131 1.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601529586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -54.851657 kcal Electronic energy + Delta-G solvation = -21483.259680 eV Core-core repulsion = 18426.407365 eV Total energy + Delta-G solvation = -3056.852315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98294 -39.40381 -38.34130 -35.66762 -34.80600 -32.29772 -32.00441 -30.67753 -28.17319 -27.94037 -27.00062 -24.64299 -23.64496 -22.59161 -21.22507 -19.72681 -19.34593 -18.36358 -17.19667 -16.76466 -16.26895 -16.05011 -15.81527 -15.50999 -15.47574 -15.18349 -14.61300 -14.52589 -14.42022 -14.03779 -13.81405 -13.30657 -12.99314 -12.99033 -12.81314 -12.68607 -12.65373 -12.52144 -12.19231 -12.05621 -12.00735 -11.63012 -11.52121 -11.39296 -11.35905 -11.08659 -10.31940 -9.97005 -9.51500 -9.41141 -8.82460 -6.48911 0.34436 0.83570 1.23005 1.36799 1.45889 2.09720 2.26691 2.47089 2.71460 3.53581 3.70369 3.85608 3.89250 4.21228 4.26643 4.39923 4.40752 4.44480 4.63310 4.69370 4.72204 4.76999 4.77196 4.87818 4.88006 5.01100 5.05639 5.09106 5.15757 5.19135 5.24678 5.29232 5.30735 5.46891 5.53462 5.60104 5.64711 5.69462 5.87094 5.96711 6.27422 6.47537 6.67955 6.78805 6.92927 7.65586 8.21981 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023775 B = 0.004879 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.423481 B = 5736.965558 C = 6477.826361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.066 4.066 4 C -0.143 4.143 5 C -0.142 4.142 6 C 0.133 3.867 7 N -0.720 5.720 8 C 0.551 3.449 9 O -0.582 6.582 10 C -0.267 4.267 11 C -0.040 4.040 12 C -0.229 4.229 13 C -0.061 4.061 14 C -0.247 4.247 15 C 0.100 3.900 16 C -0.452 4.452 17 H 0.071 0.929 18 C 0.035 3.965 19 N -0.850 5.850 20 Si 0.968 3.032 21 H -0.247 1.247 22 H -0.250 1.250 23 H -0.280 1.280 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.406 0.594 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.264 3.297 0.150 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.067 4.067 4 C -0.200 4.200 5 C -0.199 4.199 6 C 0.009 3.991 7 N -0.376 5.376 8 C 0.343 3.657 9 O -0.463 6.463 10 C -0.272 4.272 11 C -0.059 4.059 12 C -0.248 4.248 13 C -0.080 4.080 14 C -0.266 4.266 15 C 0.096 3.904 16 C -0.481 4.481 17 H 0.088 0.912 18 C -0.178 4.178 19 N -0.477 5.477 20 Si 0.791 3.209 21 H -0.171 1.171 22 H -0.173 1.173 23 H -0.207 1.207 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.245 0.755 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.120 0.880 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.477 2.458 0.193 18.641 hybrid contribution 0.815 -0.004 0.321 0.876 sum -17.662 2.454 0.514 17.839 Atomic orbital electron populations 1.21842 0.93870 1.02167 1.02711 1.21508 0.97492 0.94091 1.01951 1.20756 0.90974 0.97480 0.97449 1.21938 1.02271 0.99858 0.95928 1.21936 1.02261 0.99871 0.95867 1.21335 0.94889 0.82779 1.00108 1.45777 1.05863 1.08942 1.76976 1.18588 0.82221 0.89373 0.75486 1.90727 1.56121 1.47703 1.51752 1.19831 0.93993 0.92208 1.21128 1.21209 0.98218 0.92208 0.94217 1.20946 0.95268 0.96296 1.12270 1.21257 0.93751 0.98377 0.94578 1.21259 0.98889 0.92988 1.13489 1.17811 0.91662 0.92696 0.88204 1.19960 1.01980 1.01738 1.24430 0.91151 1.27126 0.92838 0.99559 0.98311 1.69629 1.06783 1.35895 1.35373 0.85471 0.80141 0.77995 0.77342 1.17146 1.17308 1.20668 0.92298 0.91735 0.91667 0.92190 0.92304 0.92775 0.89889 0.93281 0.93148 0.89910 0.92720 0.93814 0.94009 0.75541 0.84446 0.83649 0.84481 0.88035 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.21 71.98 0.66 -1.31 16 2 C -0.11 -2.03 4.99 30.60 0.15 -1.88 16 3 C -0.07 -1.36 0.56 -52.18 -0.03 -1.39 16 4 C -0.14 -2.60 7.95 71.98 0.57 -2.03 16 5 C -0.14 -2.53 7.95 71.98 0.57 -1.96 16 6 C 0.13 4.12 4.56 86.38 0.39 4.51 16 7 N -0.72 -24.86 4.91 -466.36 -2.29 -27.15 16 8 C 0.55 26.24 7.72 86.67 0.67 26.91 16 9 O -0.58 -34.06 13.53 -4.08 -0.06 -34.12 16 10 C -0.27 -12.59 5.92 -19.70 -0.12 -12.71 16 11 C -0.04 -1.44 9.52 22.50 0.21 -1.23 16 12 C -0.23 -7.63 10.03 22.41 0.22 -7.40 16 13 C -0.06 -2.28 10.01 22.26 0.22 -2.06 16 14 C -0.25 -11.48 7.00 22.72 0.16 -11.32 16 15 C 0.10 5.35 5.03 -21.11 -0.11 5.24 16 16 C -0.45 -27.77 8.31 23.41 0.19 -27.57 16 17 H 0.07 4.95 5.96 -2.91 -0.02 4.93 16 18 C 0.04 2.04 5.47 85.37 0.47 2.51 16 19 N -0.85 -50.47 13.92 21.88 0.30 -50.17 16 20 Si 0.97 44.36 24.52 68.60 1.68 46.05 16 21 H -0.25 -10.28 6.76 99.48 0.67 -9.61 16 22 H -0.25 -11.48 6.73 99.48 0.67 -10.81 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 26 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.01 6.86 -2.38 -0.02 0.99 16 30 H 0.08 1.13 6.43 -2.39 -0.02 1.12 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.10 6.43 -2.38 -0.02 1.09 16 34 H 0.05 0.99 6.86 -2.39 -0.02 0.97 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.41 11.13 4.21 -92.71 -0.39 10.74 16 38 H 0.14 3.69 6.42 -2.91 -0.02 3.67 16 39 H 0.15 3.58 8.06 -2.92 -0.02 3.56 16 40 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 41 H 0.10 4.69 5.01 -2.91 -0.01 4.68 16 42 H 0.29 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -73.68 324.15 4.46 -69.23 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.56 Total: 27.85 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 4.25 Total: -31.68 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.98 Total: -77.32 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.06 Total: -34.12 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.68 Total: 46.05 kcal Total: -73.68 4.46 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601529586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.375 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds