Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 113.25664 * 2 1 4 4 C 1.53513 * 114.17059 * 226.79409 * 2 1 3 5 5 N 1.47480 * 87.93170 * 272.37599 * 4 2 1 6 6 C 1.46901 * 111.00171 * 221.29782 * 5 4 2 7 7 C 1.53000 * 109.46769 * 265.97194 * 6 5 4 8 8 C 1.50690 * 115.55193 * 34.32646 * 7 6 5 9 9 H 1.08004 * 120.00357 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00157 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99820 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47361 * 89.99713 * 12 10 8 14 14 H 1.48502 * 109.47005 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.46790 * 329.99610 * 12 10 8 16 16 C 1.53005 * 117.49396 * 248.61786 * 7 6 5 17 17 C 1.53002 * 117.49443 * 179.97438 * 7 6 5 18 18 C 1.47482 * 87.83699 * 332.98885 * 5 4 2 19 19 H 1.09003 * 113.47819 * 272.24693 * 18 5 4 20 20 C 1.50701 * 113.47858 * 141.83412 * 18 5 4 21 21 C 1.34512 * 125.78573 * 159.50453 * 20 18 5 22 22 C 1.41385 * 106.83694 * 180.02562 * 21 20 18 23 23 C 1.34515 * 106.84242 * 0.02562 * 22 21 20 24 24 O 1.34305 * 125.78744 * 339.20310 * 20 18 5 25 25 H 1.09001 * 109.47031 * 287.04709 * 1 2 3 26 26 H 1.09005 * 109.47466 * 47.04606 * 1 2 3 27 27 H 1.09003 * 109.47266 * 167.05262 * 1 2 3 28 28 H 1.08998 * 109.47303 * 192.95196 * 3 2 1 29 29 H 1.08999 * 109.47631 * 312.95343 * 3 2 1 30 30 H 1.09001 * 109.47250 * 72.95105 * 3 2 1 31 31 H 1.08999 * 113.47967 * 157.60873 * 4 2 1 32 32 H 1.08994 * 113.47798 * 27.14102 * 4 2 1 33 33 H 1.09002 * 109.47401 * 145.96902 * 6 5 4 34 34 H 1.09001 * 109.46874 * 25.96914 * 6 5 4 35 35 H 0.97003 * 119.99996 * 180.02562 * 11 10 8 36 36 H 1.08991 * 117.50196 * 0.02562 * 16 7 6 37 37 H 1.09009 * 117.49403 * 145.02557 * 16 7 6 38 38 H 1.09002 * 117.49749 * 214.97590 * 17 7 6 39 39 H 1.08997 * 117.50258 * 359.97438 * 17 7 6 40 40 H 1.08000 * 126.58410 * 0.04086 * 21 20 18 41 41 H 1.08004 * 126.57785 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.79201 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1341 1.4057 0.0000 4 6 2.1585 -0.9588 -1.0209 5 7 2.0810 -2.0161 0.0045 6 6 3.2985 -2.8380 0.0063 7 6 3.0851 -4.0676 -0.8788 8 6 2.2160 -3.8529 -2.0910 9 1 1.7917 -2.8790 -2.2856 10 6 1.9626 -4.8998 -2.9517 11 7 2.4797 -6.0857 -2.7150 12 14 0.8859 -4.6335 -4.4548 13 1 1.7321 -4.2204 -5.6030 14 1 0.1809 -5.8972 -4.7888 15 1 -0.1114 -3.5715 -4.1674 16 6 3.0107 -5.4308 -0.1880 17 6 4.2468 -5.0548 -1.0085 18 6 2.1586 -0.9543 1.0251 19 1 3.1797 -0.6875 1.2975 20 6 1.2833 -1.2098 2.2250 21 6 1.4305 -0.6504 3.4394 22 6 0.4000 -1.1690 4.2568 23 6 -0.3149 -2.0146 3.4931 24 8 0.2205 -2.0301 2.2615 25 1 -0.3633 0.3013 0.9825 26 1 -0.3634 0.7003 -0.7522 27 1 -0.3634 -1.0015 -0.2303 28 1 3.1977 1.3441 -0.2303 29 1 1.6342 2.0161 -0.7521 30 1 2.0007 1.8585 0.9825 31 1 3.1797 -0.6934 -1.2945 32 1 1.5247 -1.1470 -1.8873 33 1 3.5199 -3.1573 1.0247 34 1 4.1327 -2.2525 -0.3802 35 1 2.3017 -6.8221 -3.3207 36 1 3.1134 -5.4516 0.8968 37 1 2.3329 -6.1727 -0.6105 38 1 4.3818 -5.5494 -1.9704 39 1 5.1632 -4.8281 -0.4637 40 1 2.1900 0.0588 3.7336 41 1 0.2217 -0.9323 5.2953 42 1 -1.1770 -2.5803 3.8141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602926567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = 89.396188 kcal Electronic energy + Delta-G solvation = -22317.356634 eV Core-core repulsion = 19266.759375 eV Total energy + Delta-G solvation = -3050.597259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.32347 -40.13554 -36.36563 -32.71500 -32.52969 -31.31774 -30.04623 -27.30836 -26.90570 -25.72129 -24.83764 -22.14480 -21.29306 -20.56487 -20.39024 -18.92372 -18.32944 -16.84211 -15.98186 -15.85294 -15.24949 -14.82081 -14.69338 -14.31299 -13.42628 -13.31985 -13.19161 -12.95962 -12.62021 -12.52133 -12.31240 -12.01928 -11.86698 -11.79424 -11.25399 -10.99605 -10.98645 -10.87817 -10.53563 -10.33293 -10.12509 -9.87856 -9.80868 -9.61694 -9.37480 -8.72565 -8.31939 -8.18990 -8.04002 -7.88367 -5.84504 -3.86868 2.04522 2.83583 3.33441 3.35309 3.40896 3.44182 4.39446 4.48279 4.48354 4.92890 5.08971 5.17640 5.25993 5.32430 5.37592 5.45496 5.57999 5.69614 5.75115 5.86212 5.99330 6.03299 6.05572 6.11109 6.14306 6.20066 6.29094 6.34639 6.37199 6.45200 6.56393 6.66606 6.72395 6.82665 6.93756 7.10642 7.28291 7.42646 7.51011 7.72385 7.88840 8.14784 8.32992 8.63925 9.08553 9.66393 11.12290 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.006191 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.106884 B = 4521.820523 C = 4959.161358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.135 4.135 4 C 0.018 3.982 5 N -0.423 5.423 6 C 0.065 3.935 7 C 0.030 3.970 8 C -0.455 4.455 9 H 0.070 0.930 10 C 0.053 3.947 11 N -0.884 5.884 12 Si 0.892 3.108 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.274 1.274 16 C -0.184 4.184 17 C -0.194 4.194 18 C 0.092 3.908 19 H 0.096 0.904 20 C 0.039 3.961 21 C -0.230 4.230 22 C -0.219 4.219 23 C -0.051 4.051 24 O -0.146 6.146 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.256 0.744 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 12.647 9.014 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.111 4.111 5 N -0.144 5.144 6 C -0.063 4.063 7 C 0.029 3.971 8 C -0.493 4.493 9 H 0.088 0.912 10 C -0.147 4.147 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.199 1.199 16 C -0.222 4.222 17 C -0.232 4.232 18 C -0.018 4.018 19 H 0.114 0.886 20 C -0.013 4.013 21 C -0.250 4.250 22 C -0.238 4.238 23 C -0.120 4.120 24 O -0.040 6.040 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.744 11.761 8.662 14.862 hybrid contribution 0.364 0.374 -0.329 0.618 sum -2.380 12.135 8.333 14.912 Atomic orbital electron populations 1.21466 0.92111 1.03119 1.00882 1.22147 0.96909 0.93582 0.95899 1.21728 1.00393 0.95366 1.01785 1.23980 1.00179 0.90137 0.96778 1.69015 1.35499 1.08934 1.00982 1.22239 0.89471 0.96013 0.98537 1.18804 0.97599 0.85429 0.95250 1.20704 1.27348 0.96417 1.04827 0.91246 1.25023 0.96251 0.95362 0.98073 1.70031 1.44588 1.00926 1.36811 0.86594 0.80705 0.77539 0.83163 1.20987 1.21451 1.19873 1.22806 1.02429 1.04104 0.92840 1.22860 0.89809 1.08220 1.02326 1.22218 0.95624 0.94902 0.89084 0.88642 1.22076 0.89587 0.93598 0.96062 1.21439 1.03415 1.06860 0.93308 1.21685 0.98817 1.02415 1.00932 1.24017 1.01525 1.03405 0.83052 1.84206 1.35989 1.52652 1.31109 0.93015 0.92724 0.90691 0.92516 0.92119 0.92495 0.91537 0.88801 0.93053 0.94963 0.93411 0.94427 0.87397 0.87227 0.94421 0.84189 0.84126 0.78725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.17 37.16 0.30 -1.40 16 2 C -0.08 -1.20 1.42 -153.98 -0.22 -1.42 16 3 C -0.14 -1.50 9.30 37.16 0.35 -1.16 16 4 C 0.02 0.30 5.53 -7.54 -0.04 0.26 16 5 N -0.42 -8.23 5.32 -237.82 -1.27 -9.49 16 6 C 0.07 1.38 5.02 -3.82 -0.02 1.36 16 7 C 0.03 0.75 2.52 -155.66 -0.39 0.36 16 8 C -0.46 -12.30 8.59 -34.44 -0.30 -12.59 16 9 H 0.07 1.81 4.74 -52.48 -0.25 1.56 16 10 C 0.05 1.46 5.28 -17.82 -0.09 1.36 16 11 N -0.88 -25.10 8.59 55.43 0.48 -24.63 16 12 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 C -0.18 -4.79 9.31 -26.70 -0.25 -5.04 16 17 C -0.19 -4.93 9.38 -26.70 -0.25 -5.18 16 18 C 0.09 1.45 3.03 -72.58 -0.22 1.23 16 19 H 0.10 1.38 7.87 -51.93 -0.41 0.97 16 20 C 0.04 0.63 5.15 -35.63 -0.18 0.44 16 21 C -0.23 -3.25 10.81 -39.70 -0.43 -3.68 16 22 C -0.22 -2.86 10.91 -39.70 -0.43 -3.29 16 23 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 24 O -0.15 -2.54 10.28 5.69 0.06 -2.48 16 25 H 0.05 0.72 7.44 -51.93 -0.39 0.34 16 26 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 28 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.07 7.22 -51.93 -0.38 0.69 16 32 H 0.09 1.74 6.69 -51.93 -0.35 1.40 16 33 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 34 H 0.03 0.64 7.30 -51.93 -0.38 0.26 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.04 0.91 8.05 -51.93 -0.42 0.50 16 37 H 0.11 3.10 6.28 -51.92 -0.33 2.78 16 38 H 0.11 3.06 6.28 -51.93 -0.33 2.73 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 332.15 15.07 5.01 5.01 Total: -1.00 -29.73 332.15 -9.11 -38.84 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.54 Total: 5.49 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -1.82 Total: -29.11 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.79 Total: -34.12 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.06 Total: -2.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.73 -9.11 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.238 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds