Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 113.25664 * 2 1 4 4 C 1.53513 * 114.17059 * 226.79409 * 2 1 3 5 5 N 1.47480 * 87.93170 * 272.37599 * 4 2 1 6 6 C 1.46901 * 111.00171 * 221.29782 * 5 4 2 7 7 C 1.53000 * 109.46769 * 265.97194 * 6 5 4 8 8 C 1.50690 * 115.55193 * 34.32646 * 7 6 5 9 9 H 1.08004 * 120.00357 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00157 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99820 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00272 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47361 * 89.99713 * 12 10 8 14 14 H 1.48502 * 109.47005 * 210.00023 * 12 10 8 15 15 H 1.48498 * 109.46790 * 329.99610 * 12 10 8 16 16 C 1.53005 * 117.49396 * 248.61786 * 7 6 5 17 17 C 1.53002 * 117.49443 * 179.97438 * 7 6 5 18 18 C 1.47482 * 87.83699 * 332.98885 * 5 4 2 19 19 H 1.09003 * 113.47819 * 272.24693 * 18 5 4 20 20 C 1.50701 * 113.47858 * 141.83412 * 18 5 4 21 21 C 1.34512 * 125.78573 * 159.50453 * 20 18 5 22 22 C 1.41385 * 106.83694 * 180.02562 * 21 20 18 23 23 C 1.34515 * 106.84242 * 0.02562 * 22 21 20 24 24 O 1.34305 * 125.78744 * 339.20310 * 20 18 5 25 25 H 1.09001 * 109.47031 * 287.04709 * 1 2 3 26 26 H 1.09005 * 109.47466 * 47.04606 * 1 2 3 27 27 H 1.09003 * 109.47266 * 167.05262 * 1 2 3 28 28 H 1.08998 * 109.47303 * 192.95196 * 3 2 1 29 29 H 1.08999 * 109.47631 * 312.95343 * 3 2 1 30 30 H 1.09001 * 109.47250 * 72.95105 * 3 2 1 31 31 H 1.08999 * 113.47967 * 157.60873 * 4 2 1 32 32 H 1.08994 * 113.47798 * 27.14102 * 4 2 1 33 33 H 1.09002 * 109.47401 * 145.96902 * 6 5 4 34 34 H 1.09001 * 109.46874 * 25.96914 * 6 5 4 35 35 H 0.97003 * 119.99996 * 180.02562 * 11 10 8 36 36 H 1.08991 * 117.50196 * 0.02562 * 16 7 6 37 37 H 1.09009 * 117.49403 * 145.02557 * 16 7 6 38 38 H 1.09002 * 117.49749 * 214.97590 * 17 7 6 39 39 H 1.08997 * 117.50258 * 359.97438 * 17 7 6 40 40 H 1.08000 * 126.58410 * 0.04086 * 21 20 18 41 41 H 1.08004 * 126.57785 * 179.97438 * 22 21 20 42 42 H 1.07998 * 125.79201 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1341 1.4057 0.0000 4 6 2.1585 -0.9588 -1.0209 5 7 2.0810 -2.0161 0.0045 6 6 3.2985 -2.8380 0.0063 7 6 3.0851 -4.0676 -0.8788 8 6 2.2160 -3.8529 -2.0910 9 1 1.7917 -2.8790 -2.2856 10 6 1.9626 -4.8998 -2.9517 11 7 2.4797 -6.0857 -2.7150 12 14 0.8859 -4.6335 -4.4548 13 1 1.7321 -4.2204 -5.6030 14 1 0.1809 -5.8972 -4.7888 15 1 -0.1114 -3.5715 -4.1674 16 6 3.0107 -5.4308 -0.1880 17 6 4.2468 -5.0548 -1.0085 18 6 2.1586 -0.9543 1.0251 19 1 3.1797 -0.6875 1.2975 20 6 1.2833 -1.2098 2.2250 21 6 1.4305 -0.6504 3.4394 22 6 0.4000 -1.1690 4.2568 23 6 -0.3149 -2.0146 3.4931 24 8 0.2205 -2.0301 2.2615 25 1 -0.3633 0.3013 0.9825 26 1 -0.3634 0.7003 -0.7522 27 1 -0.3634 -1.0015 -0.2303 28 1 3.1977 1.3441 -0.2303 29 1 1.6342 2.0161 -0.7521 30 1 2.0007 1.8585 0.9825 31 1 3.1797 -0.6934 -1.2945 32 1 1.5247 -1.1470 -1.8873 33 1 3.5199 -3.1573 1.0247 34 1 4.1327 -2.2525 -0.3802 35 1 2.3017 -6.8221 -3.3207 36 1 3.1134 -5.4516 0.8968 37 1 2.3329 -6.1727 -0.6105 38 1 4.3818 -5.5494 -1.9704 39 1 5.1632 -4.8281 -0.4637 40 1 2.1900 0.0588 3.7336 41 1 0.2217 -0.9323 5.2953 42 1 -1.1770 -2.5803 3.8141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602926567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = 72.491210 kcal Electronic energy + Delta-G solvation = -22318.089689 eV Core-core repulsion = 19266.759375 eV Total energy + Delta-G solvation = -3051.330314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.43919 -41.42528 -38.29739 -34.09384 -33.75656 -33.20143 -31.15586 -28.51913 -28.28277 -27.52484 -26.22573 -23.56186 -22.63100 -22.39636 -21.50210 -20.83696 -19.50845 -18.02723 -17.83137 -17.07849 -16.95209 -16.21588 -16.10348 -15.76370 -15.21563 -14.57542 -14.46920 -14.23201 -14.07583 -13.58516 -13.52366 -13.29061 -13.08414 -12.95749 -12.91440 -12.87241 -12.64419 -12.30935 -12.13193 -11.96759 -11.93630 -11.51291 -11.30415 -11.15925 -10.74178 -10.67257 -10.23578 -10.01225 -9.55425 -9.19730 -7.94318 -6.02089 0.94519 1.40732 1.42953 1.52292 1.81048 2.31513 2.46213 3.01530 3.20572 3.31868 3.80037 3.92031 4.03511 4.13444 4.27999 4.28373 4.32865 4.39514 4.44570 4.50461 4.69435 4.77830 4.84246 4.91886 4.93147 4.98331 5.02605 5.08263 5.11667 5.14929 5.18406 5.24967 5.28314 5.33341 5.36236 5.55422 5.56879 5.72967 5.79221 5.99357 6.18332 6.29178 6.50436 6.58218 7.00587 7.53697 9.00772 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.006191 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.106884 B = 4521.820523 C = 4959.161358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 C -0.129 4.129 4 C 0.013 3.987 5 N -0.456 5.456 6 C 0.076 3.924 7 C 0.023 3.977 8 C -0.468 4.468 9 H 0.074 0.926 10 C 0.003 3.997 11 N -0.909 5.909 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.292 1.292 15 H -0.270 1.270 16 C -0.192 4.192 17 C -0.190 4.190 18 C 0.096 3.904 19 H 0.112 0.888 20 C 0.007 3.993 21 C -0.224 4.224 22 C -0.219 4.219 23 C -0.064 4.064 24 O -0.182 6.182 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.252 0.748 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 15.186 10.144 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.069 4.069 3 C -0.186 4.186 4 C -0.115 4.115 5 N -0.177 5.177 6 C -0.052 4.052 7 C 0.022 3.978 8 C -0.506 4.506 9 H 0.092 0.908 10 C -0.195 4.195 11 N -0.549 5.549 12 Si 0.778 3.222 13 H -0.202 1.202 14 H -0.218 1.218 15 H -0.194 1.194 16 C -0.230 4.230 17 C -0.228 4.228 18 C -0.014 4.014 19 H 0.130 0.870 20 C -0.044 4.044 21 C -0.243 4.243 22 C -0.238 4.238 23 C -0.131 4.131 24 O -0.077 6.077 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.721 14.318 9.797 17.561 hybrid contribution 0.316 -0.446 -0.612 0.821 sum -2.405 13.872 9.185 16.810 Atomic orbital electron populations 1.21390 0.92533 1.01479 1.01574 1.22073 0.96483 0.94868 0.93517 1.21701 1.00796 0.93051 1.03078 1.23999 1.00606 0.90640 0.96263 1.68926 1.34704 1.10724 1.03379 1.22039 0.90891 0.94860 0.97407 1.19059 0.96706 0.86704 0.95327 1.21079 1.27432 0.96609 1.05462 0.90765 1.25763 0.97631 0.95291 1.00792 1.70200 1.45669 1.01446 1.37550 0.85650 0.79179 0.77167 0.80191 1.20192 1.21799 1.19419 1.22648 1.02511 1.04375 0.93424 1.22728 0.90682 1.08286 1.01147 1.22304 0.96680 0.93652 0.88748 0.87042 1.22257 0.90180 0.94957 0.96997 1.21792 1.03675 1.06336 0.92502 1.22065 0.98013 1.01596 1.02088 1.24722 1.02335 1.03882 0.82194 1.84174 1.36907 1.53664 1.32959 0.92618 0.90952 0.94125 0.91587 0.90939 0.91085 0.90491 0.91168 0.93095 0.93640 0.93832 0.93075 0.90568 0.89953 0.91937 0.81951 0.81286 0.76117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 8.17 71.98 0.59 -2.53 16 2 C -0.07 -1.83 1.42 -51.84 -0.07 -1.90 16 3 C -0.13 -2.42 9.30 71.98 0.67 -1.75 16 4 C 0.01 0.45 5.53 83.58 0.46 0.91 16 5 N -0.46 -17.55 5.32 -906.34 -4.83 -22.38 16 6 C 0.08 3.17 5.02 86.30 0.43 3.61 16 7 C 0.02 1.16 2.52 -52.93 -0.13 1.03 16 8 C -0.47 -25.68 8.59 25.60 0.22 -25.46 16 9 H 0.07 3.92 4.74 -2.91 -0.01 3.91 16 10 C 0.00 0.15 5.28 84.65 0.45 0.59 16 11 N -0.91 -53.14 8.59 21.45 0.18 -52.96 16 12 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 16 C -0.19 -10.21 9.31 30.61 0.28 -9.92 16 17 C -0.19 -9.78 9.38 30.61 0.29 -9.49 16 18 C 0.10 2.87 3.03 41.44 0.13 3.00 16 19 H 0.11 2.93 7.87 -2.39 -0.02 2.91 16 20 C 0.01 0.22 5.15 24.83 0.13 0.35 16 21 C -0.22 -5.70 10.81 22.19 0.24 -5.46 16 22 C -0.22 -5.11 10.91 22.19 0.24 -4.86 16 23 C -0.06 -1.67 12.09 66.97 0.81 -0.86 16 24 O -0.18 -6.25 10.28 -2.54 -0.03 -6.28 16 25 H 0.05 1.48 7.44 -2.39 -0.02 1.47 16 26 H 0.07 1.70 8.13 -2.38 -0.02 1.68 16 27 H 0.04 1.39 7.92 -2.39 -0.02 1.37 16 28 H 0.07 1.14 7.91 -2.39 -0.02 1.12 16 29 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.36 7.22 -2.39 -0.02 2.34 16 32 H 0.07 2.63 6.69 -2.39 -0.02 2.61 16 33 H 0.05 2.08 7.84 -2.39 -0.02 2.06 16 34 H 0.05 1.74 7.30 -2.39 -0.02 1.72 16 35 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.05 2.52 8.05 -2.39 -0.02 2.50 16 37 H 0.08 4.55 6.28 -2.38 -0.01 4.54 16 38 H 0.08 4.71 6.28 -2.39 -0.01 4.70 16 39 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 41 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.22 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -65.50 332.15 3.08 -62.42 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.00 Total: 25.21 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 4.73 Total: -52.77 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -4.64 Total: -75.34 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.03 Total: -6.28 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.50 3.08 -62.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602926567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.910 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds