Wall clock time and date at job start Mon Mar 30 2020 02:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.53001 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.84890 * 270.32158 * 5 4 3 7 7 C 1.37938 * 120.15193 * 180.28064 * 6 5 4 8 8 C 1.39648 * 119.84570 * 359.42283 * 7 6 5 9 9 C 1.47726 * 120.14918 * 180.29805 * 8 7 6 10 10 O 1.21592 * 120.00135 * 324.24444 * 9 8 7 11 11 N 1.34779 * 119.99702 * 144.24236 * 9 8 7 12 12 C 1.36868 * 119.99609 * 186.58050 * 11 9 8 13 13 H 1.07996 * 120.00629 * 346.00170 * 12 11 9 14 14 C 1.39053 * 119.99519 * 166.00156 * 12 11 9 15 15 N 1.31361 * 120.00352 * 35.19327 * 14 12 11 16 16 Si 1.86803 * 119.99777 * 215.18533 * 14 12 11 17 17 H 1.48502 * 109.47020 * 60.00599 * 16 14 12 18 18 H 1.48502 * 109.46906 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47322 * 300.00482 * 16 14 12 20 20 C 1.46496 * 119.99912 * 6.58641 * 11 9 8 21 21 C 1.52994 * 109.47377 * 99.52156 * 20 11 9 22 22 C 1.39644 * 119.69665 * 0.27803 * 8 7 6 23 23 C 1.37934 * 119.85173 * 359.97438 * 22 8 7 24 24 H 1.09000 * 109.47551 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47270 * 299.99830 * 1 2 3 26 26 H 1.09010 * 109.47177 * 59.99723 * 1 2 3 27 27 H 1.09002 * 109.46548 * 240.00732 * 2 1 3 28 28 H 1.08994 * 109.46806 * 120.00359 * 2 1 3 29 29 H 1.08999 * 109.46859 * 59.99919 * 3 2 1 30 30 H 1.09001 * 109.47111 * 300.00443 * 3 2 1 31 31 H 1.08997 * 109.46534 * 60.00241 * 4 3 2 32 32 H 1.08994 * 109.46806 * 300.00359 * 4 3 2 33 33 H 1.08003 * 119.92078 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.07689 * 179.69715 * 7 6 5 35 35 H 0.97002 * 120.00655 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46994 * 219.51861 * 20 11 9 37 37 H 1.09000 * 109.47274 * 339.51768 * 20 11 9 38 38 H 1.09004 * 109.47162 * 195.31466 * 21 20 11 39 39 H 1.09001 * 109.47093 * 315.30973 * 21 20 11 40 40 H 1.08997 * 109.47756 * 75.31345 * 21 20 11 41 41 H 1.08005 * 120.07515 * 180.02562 * 22 8 7 42 42 H 1.07995 * 119.92948 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8632 0.0013 6 6 4.2961 3.5152 -1.1986 7 6 4.7614 4.8137 -1.2054 8 6 4.9951 5.4745 0.0025 9 6 5.4871 6.8674 0.0030 10 8 6.2697 7.2361 -0.8514 11 7 5.0685 7.7295 0.9507 12 6 5.4160 9.0512 0.8751 13 1 6.1982 9.3662 0.2003 14 6 4.7619 9.9884 1.6672 15 7 4.3726 9.6664 2.8797 16 14 4.4371 11.7054 1.0069 17 1 3.5943 11.6155 -0.2125 18 1 3.7317 12.5072 2.0387 19 1 5.7274 12.3584 0.6698 20 6 4.2418 7.2518 2.0618 21 6 5.1195 7.0417 3.2971 22 6 4.7613 4.8126 1.2097 23 6 4.3010 3.5124 1.2018 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9286 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 4.1107 3.0044 -2.1320 34 1 4.9402 5.3197 -2.1426 35 1 3.9166 10.3203 3.4324 36 1 3.4713 7.9899 2.2848 37 1 3.7717 6.3081 1.7853 38 1 4.5794 6.4407 4.0287 39 1 6.0355 6.5262 3.0086 40 1 5.3690 8.0085 3.7343 41 1 4.9396 5.3180 2.1474 42 1 4.1193 2.9995 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604481140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:11 Heat of formation + Delta-G solvation = -2.033888 kcal Electronic energy + Delta-G solvation = -21164.692327 eV Core-core repulsion = 18110.130362 eV Total energy + Delta-G solvation = -3054.561965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.66042 -37.88418 -35.65522 -35.18087 -32.56260 -31.67498 -30.54520 -29.44620 -28.52615 -25.43811 -24.04144 -22.35902 -22.12476 -21.45534 -20.87575 -19.35586 -16.95255 -16.40898 -15.78774 -15.58099 -14.84052 -14.62094 -14.23091 -14.10120 -13.96412 -13.58213 -13.39156 -13.01414 -12.77397 -12.53842 -12.36750 -12.19063 -11.93107 -11.40946 -11.34447 -11.31093 -11.16656 -11.11175 -10.87637 -10.70608 -10.60658 -10.43047 -10.34095 -10.20996 -9.87619 -8.71023 -8.48087 -8.45804 -8.07853 -7.89731 -6.55530 -3.75579 1.51453 1.82561 3.15061 3.23108 3.29141 3.75233 4.06477 4.39096 4.68828 4.78604 4.80592 4.95781 5.01547 5.10950 5.18147 5.38109 5.40193 5.59053 5.60537 5.62660 5.69164 5.70096 5.82696 5.88107 5.98824 5.99610 6.13191 6.22004 6.24907 6.38216 6.44152 6.50734 6.59432 6.65183 6.81835 6.92910 7.01707 7.24378 7.38132 7.41675 7.70117 8.08294 8.45962 9.12933 9.37397 9.98937 10.44884 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.003976 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.372593 B = 7040.484286 C = 7343.010992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.077 4.077 5 C -0.088 4.088 6 C -0.127 4.127 7 C -0.079 4.079 8 C -0.094 4.094 9 C 0.465 3.535 10 O -0.595 6.595 11 N -0.424 5.424 12 C -0.318 4.318 13 H 0.108 0.892 14 C 0.045 3.955 15 N -0.841 5.841 16 Si 0.908 3.092 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.091 3.909 21 C -0.156 4.156 22 C -0.116 4.116 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.271 0.729 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.149 0.851 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -15.067 -0.274 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.114 4.114 5 C -0.089 4.089 6 C -0.145 4.145 7 C -0.099 4.099 8 C -0.097 4.097 9 C 0.256 3.744 10 O -0.482 6.482 11 N -0.140 5.140 12 C -0.444 4.444 13 H 0.125 0.875 14 C -0.160 4.160 15 N -0.478 5.478 16 Si 0.734 3.266 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.032 4.032 21 C -0.214 4.214 22 C -0.134 4.134 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.166 0.834 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.629 -14.743 -0.467 16.172 hybrid contribution -0.229 0.855 -0.079 0.889 sum -6.858 -13.888 -0.546 15.498 Atomic orbital electron populations 1.21782 0.96017 1.01338 1.01940 1.21551 0.95769 0.97058 1.01842 1.21621 0.94639 0.96400 1.02625 1.20571 0.95394 0.93004 1.02429 1.19864 0.99864 0.95834 0.93321 1.20847 1.01657 0.94841 0.97195 1.21147 0.96959 0.94072 0.97687 1.20276 1.00199 0.95612 0.93636 1.17779 0.86890 0.84781 0.84982 1.90591 1.38256 1.78321 1.41062 1.43719 1.43080 1.07879 1.19334 1.19595 1.20205 0.80709 1.23914 0.87452 1.25270 0.96387 1.00323 0.94062 1.70130 1.36074 1.36490 1.05103 0.86289 0.79266 0.81823 0.79252 1.19808 1.21001 1.19647 1.22237 0.95397 0.99046 0.86516 1.22201 0.98089 1.03619 0.97496 1.22175 0.97668 0.94422 0.99140 1.20897 1.01743 0.94774 0.97169 0.92993 0.92709 0.92758 0.92153 0.92113 0.91743 0.91810 0.91368 0.91322 0.86464 0.85710 0.91866 0.88360 0.92311 0.94411 0.94833 0.88186 0.83394 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.13 5.20 -26.73 -0.14 -1.27 16 4 C -0.08 -0.81 5.34 -27.89 -0.15 -0.96 16 5 C -0.09 -1.24 5.14 -104.52 -0.54 -1.78 16 6 C -0.13 -1.94 9.68 -39.64 -0.38 -2.32 16 7 C -0.08 -1.49 9.62 -39.17 -0.38 -1.87 16 8 C -0.09 -1.99 5.44 -104.97 -0.57 -2.56 16 9 C 0.47 12.08 7.34 -12.38 -0.09 11.99 16 10 O -0.60 -17.43 16.46 5.28 0.09 -17.34 16 11 N -0.42 -11.03 2.64 -115.93 -0.31 -11.33 16 12 C -0.32 -8.81 9.24 -15.00 -0.14 -8.95 16 13 H 0.11 3.18 7.42 -52.49 -0.39 2.79 16 14 C 0.05 1.16 5.04 -17.45 -0.09 1.07 16 15 N -0.84 -20.81 8.42 55.50 0.47 -20.34 16 16 Si 0.91 20.12 29.67 -169.99 -5.04 15.08 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.09 2.04 4.87 -4.05 -0.02 2.02 16 21 C -0.16 -3.24 8.37 37.15 0.31 -2.93 16 22 C -0.12 -2.12 7.39 -39.17 -0.29 -2.41 16 23 C -0.13 -1.94 9.68 -39.64 -0.38 -2.32 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.12 2.36 8.01 -52.49 -0.42 1.94 16 35 H 0.27 6.31 8.31 -40.82 -0.34 5.98 16 36 H 0.10 2.35 5.84 -51.93 -0.30 2.05 16 37 H 0.06 1.20 4.30 -51.93 -0.22 0.97 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.69 7.41 -51.93 -0.38 0.31 16 40 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 41 H 0.15 2.72 3.32 -52.48 -0.17 2.55 16 42 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -29.57 334.81 -8.81 -38.37 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.41 Total: 4.79 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.65 Total: -14.27 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.16 Total: -31.68 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.09 Total: -17.34 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.04 Total: 15.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.57 -8.81 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.341 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds