Wall clock time and date at job start Mon Mar 30 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.53001 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.84890 * 270.32158 * 5 4 3 7 7 C 1.37938 * 120.15193 * 180.28064 * 6 5 4 8 8 C 1.39648 * 119.84570 * 359.42283 * 7 6 5 9 9 C 1.47726 * 120.14918 * 180.29805 * 8 7 6 10 10 O 1.21592 * 120.00135 * 324.24444 * 9 8 7 11 11 N 1.34779 * 119.99702 * 144.24236 * 9 8 7 12 12 C 1.36868 * 119.99609 * 186.58050 * 11 9 8 13 13 H 1.07996 * 120.00629 * 346.00170 * 12 11 9 14 14 C 1.39053 * 119.99519 * 166.00156 * 12 11 9 15 15 N 1.31361 * 120.00352 * 35.19327 * 14 12 11 16 16 Si 1.86803 * 119.99777 * 215.18533 * 14 12 11 17 17 H 1.48502 * 109.47020 * 60.00599 * 16 14 12 18 18 H 1.48502 * 109.46906 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47322 * 300.00482 * 16 14 12 20 20 C 1.46496 * 119.99912 * 6.58641 * 11 9 8 21 21 C 1.52994 * 109.47377 * 99.52156 * 20 11 9 22 22 C 1.39644 * 119.69665 * 0.27803 * 8 7 6 23 23 C 1.37934 * 119.85173 * 359.97438 * 22 8 7 24 24 H 1.09000 * 109.47551 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47270 * 299.99830 * 1 2 3 26 26 H 1.09010 * 109.47177 * 59.99723 * 1 2 3 27 27 H 1.09002 * 109.46548 * 240.00732 * 2 1 3 28 28 H 1.08994 * 109.46806 * 120.00359 * 2 1 3 29 29 H 1.08999 * 109.46859 * 59.99919 * 3 2 1 30 30 H 1.09001 * 109.47111 * 300.00443 * 3 2 1 31 31 H 1.08997 * 109.46534 * 60.00241 * 4 3 2 32 32 H 1.08994 * 109.46806 * 300.00359 * 4 3 2 33 33 H 1.08003 * 119.92078 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.07689 * 179.69715 * 7 6 5 35 35 H 0.97002 * 120.00655 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.46994 * 219.51861 * 20 11 9 37 37 H 1.09000 * 109.47274 * 339.51768 * 20 11 9 38 38 H 1.09004 * 109.47162 * 195.31466 * 21 20 11 39 39 H 1.09001 * 109.47093 * 315.30973 * 21 20 11 40 40 H 1.08997 * 109.47756 * 75.31345 * 21 20 11 41 41 H 1.08005 * 120.07515 * 180.02562 * 22 8 7 42 42 H 1.07995 * 119.92948 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8632 0.0013 6 6 4.2961 3.5152 -1.1986 7 6 4.7614 4.8137 -1.2054 8 6 4.9951 5.4745 0.0025 9 6 5.4871 6.8674 0.0030 10 8 6.2697 7.2361 -0.8514 11 7 5.0685 7.7295 0.9507 12 6 5.4160 9.0512 0.8751 13 1 6.1982 9.3662 0.2003 14 6 4.7619 9.9884 1.6672 15 7 4.3726 9.6664 2.8797 16 14 4.4371 11.7054 1.0069 17 1 3.5943 11.6155 -0.2125 18 1 3.7317 12.5072 2.0387 19 1 5.7274 12.3584 0.6698 20 6 4.2418 7.2518 2.0618 21 6 5.1195 7.0417 3.2971 22 6 4.7613 4.8126 1.2097 23 6 4.3010 3.5124 1.2018 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9286 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 4.1107 3.0044 -2.1320 34 1 4.9402 5.3197 -2.1426 35 1 3.9166 10.3203 3.4324 36 1 3.4713 7.9899 2.2848 37 1 3.7717 6.3081 1.7853 38 1 4.5794 6.4407 4.0287 39 1 6.0355 6.5262 3.0086 40 1 5.3690 8.0085 3.7343 41 1 4.9396 5.3180 2.1474 42 1 4.1193 2.9995 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604481140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:10 Heat of formation + Delta-G solvation = -16.825843 kcal Electronic energy + Delta-G solvation = -21165.333754 eV Core-core repulsion = 18110.130362 eV Total energy + Delta-G solvation = -3055.203392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26669 -39.42440 -37.18128 -36.52098 -34.22531 -32.99974 -32.07545 -31.11639 -29.64314 -27.16288 -25.24415 -24.01449 -23.54799 -22.57450 -21.76334 -21.00938 -18.91153 -18.15561 -17.25170 -16.60989 -16.46390 -16.04877 -15.96855 -15.52653 -15.11634 -14.88092 -14.83829 -14.37863 -13.99763 -13.93321 -13.69082 -13.43247 -13.28865 -13.10538 -12.92500 -12.69253 -12.48265 -12.22932 -12.13638 -12.10306 -11.96226 -11.73986 -11.59860 -11.51577 -11.30041 -10.68061 -10.43056 -9.97969 -9.72460 -9.48193 -8.52437 -5.83275 0.11164 0.49498 1.33924 1.40464 1.49149 2.04624 2.22112 2.78060 2.93104 3.13156 3.79036 3.92880 3.99452 4.10009 4.19553 4.25405 4.37277 4.42987 4.49500 4.58772 4.70993 4.75650 4.79790 4.84544 4.90598 5.00457 5.02472 5.03832 5.14227 5.18439 5.23497 5.33610 5.37851 5.44380 5.45397 5.47972 5.58097 5.59545 5.72097 5.89524 6.02098 6.09816 6.48280 7.11592 7.40495 8.01860 8.46412 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.003976 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.372593 B = 7040.484286 C = 7343.010992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.073 4.073 5 C -0.070 4.070 6 C -0.119 4.119 7 C -0.094 4.094 8 C -0.129 4.129 9 C 0.449 3.551 10 O -0.649 6.649 11 N -0.433 5.433 12 C -0.372 4.372 13 H 0.070 0.930 14 C 0.026 3.974 15 N -0.838 5.838 16 Si 0.970 3.030 17 H -0.279 1.279 18 H -0.261 1.261 19 H -0.275 1.275 20 C 0.094 3.906 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.281 0.719 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -17.716 0.912 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.070 4.070 6 C -0.137 4.137 7 C -0.114 4.114 8 C -0.132 4.132 9 C 0.240 3.760 10 O -0.541 6.541 11 N -0.148 5.148 12 C -0.498 4.498 13 H 0.088 0.912 14 C -0.181 4.181 15 N -0.473 5.473 16 Si 0.793 3.207 17 H -0.205 1.205 18 H -0.185 1.185 19 H -0.200 1.200 20 C -0.028 4.028 21 C -0.202 4.202 22 C -0.140 4.140 23 C -0.138 4.138 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.163 0.837 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.596 -17.404 0.774 19.427 hybrid contribution 0.332 1.555 -0.422 1.645 sum -8.265 -15.849 0.352 17.878 Atomic orbital electron populations 1.21798 0.95949 1.01882 1.01668 1.21521 0.95820 0.95908 1.02607 1.21592 0.93890 0.97510 1.02098 1.20662 0.95799 0.90349 1.04233 1.20355 0.96969 0.97414 0.92305 1.21164 1.00026 0.93156 0.99366 1.21190 0.98147 0.95712 0.96342 1.20024 1.03707 0.93525 0.95975 1.18650 0.86343 0.86776 0.84181 1.90513 1.40683 1.79945 1.42934 1.43916 1.43115 1.07464 1.20303 1.19386 1.22233 0.82623 1.25573 0.91178 1.25865 0.95262 1.03190 0.93823 1.70158 1.34558 1.37733 1.04836 0.85393 0.78777 0.77824 0.78725 1.20513 1.18515 1.20021 1.22327 0.94880 0.99436 0.86194 1.22045 0.98001 1.02790 0.97360 1.22142 0.98288 0.95883 0.97669 1.21274 0.99943 0.93292 0.99261 0.92091 0.92978 0.93096 0.91446 0.91299 0.92247 0.92510 0.89756 0.89479 0.83287 0.87259 0.90840 0.89990 0.89962 0.90458 0.95559 0.90715 0.83734 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.48 5.93 30.59 0.18 -1.30 16 3 C -0.11 -1.76 5.20 30.59 0.16 -1.60 16 4 C -0.07 -1.19 5.34 29.85 0.16 -1.03 16 5 C -0.07 -1.71 5.14 -19.80 -0.10 -1.81 16 6 C -0.12 -3.36 9.68 22.23 0.22 -3.15 16 7 C -0.09 -3.61 9.62 22.54 0.22 -3.39 16 8 C -0.13 -5.65 5.44 -20.09 -0.11 -5.76 16 9 C 0.45 24.83 7.34 86.75 0.64 25.47 16 10 O -0.65 -41.24 16.46 -4.00 -0.07 -41.30 16 11 N -0.43 -23.74 2.64 -638.96 -1.69 -25.43 16 12 C -0.37 -21.91 9.24 84.10 0.78 -21.13 16 13 H 0.07 4.54 7.42 -2.91 -0.02 4.52 16 14 C 0.03 1.34 5.04 84.96 0.43 1.77 16 15 N -0.84 -41.58 8.42 21.68 0.18 -41.40 16 16 Si 0.97 42.05 29.67 68.60 2.04 44.09 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.09 4.26 4.87 86.38 0.42 4.68 16 21 C -0.14 -5.95 8.37 71.98 0.60 -5.35 16 22 C -0.12 -4.34 7.39 22.54 0.17 -4.17 16 23 C -0.12 -3.23 9.68 22.23 0.22 -3.02 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 32 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.11 4.39 8.01 -2.91 -0.02 4.37 16 35 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 36 H 0.08 3.97 5.84 -2.38 -0.01 3.95 16 37 H 0.08 3.33 4.30 -2.39 -0.01 3.32 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.03 1.09 7.41 -2.39 -0.02 1.07 16 40 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 41 H 0.15 5.19 3.32 -2.91 -0.01 5.18 16 42 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -69.52 334.81 6.14 -63.38 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.00 Total: 21.67 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 4.68 Total: -21.01 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.51 Total: -66.83 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.07 Total: -41.30 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.04 Total: 44.09 kcal Total: -69.52 6.14 -63.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.549 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds