Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46527 * 2 1 4 4 C 1.53004 * 109.46764 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47228 * 180.02562 * 4 3 2 6 6 C 1.38351 * 119.85608 * 89.99385 * 5 4 3 7 7 C 1.37962 * 120.14603 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.85187 * 0.02593 * 7 6 5 9 9 C 1.47841 * 120.14691 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00155 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00513 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 15 15 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 C 1.39578 * 119.70971 * 0.25239 * 8 7 6 24 24 C 1.37955 * 119.85210 * 359.46740 * 23 8 7 25 25 H 1.09003 * 109.47429 * 60.00529 * 1 2 3 26 26 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47468 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47009 * 240.00107 * 2 1 3 29 29 H 1.08993 * 109.47187 * 119.99976 * 2 1 3 30 30 H 1.09000 * 109.47389 * 60.00339 * 3 2 1 31 31 H 1.09001 * 109.47290 * 299.99221 * 3 2 1 32 32 H 1.09001 * 109.47536 * 59.99651 * 4 3 2 33 33 H 1.09003 * 109.47124 * 299.99429 * 4 3 2 34 34 H 1.07996 * 119.93200 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.07693 * 179.97438 * 7 6 5 36 36 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47069 * 60.00420 * 14 12 11 38 38 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47438 * 299.99560 * 14 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.07081 * 179.72901 * 23 8 7 42 42 H 1.08003 * 119.92643 * 180.27835 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.3021 3.5122 1.2002 7 6 4.7625 4.8127 1.2077 8 6 4.9957 5.4742 0.0010 9 6 5.4885 6.8680 0.0015 10 8 5.6919 7.4404 1.0544 11 7 5.7122 7.5042 -1.1654 12 6 6.2010 8.8852 -1.1649 13 1 6.8786 9.0305 -0.3236 14 6 5.0165 9.8453 -1.0374 15 6 6.9334 9.1594 -2.4531 16 1 7.0259 8.3825 -3.1976 17 6 7.4907 10.4001 -2.6786 18 7 7.3784 11.3462 -1.7719 19 14 8.4053 10.7376 -4.2721 20 1 7.4853 10.5433 -5.4215 21 1 8.9049 12.1361 -4.2694 22 1 9.5522 9.8020 -4.3922 23 6 4.7561 4.8159 -1.2063 24 6 4.3013 3.5135 -1.1998 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9288 0.8892 34 1 4.1209 2.9994 2.1332 35 1 4.9412 5.3181 2.1453 36 1 5.5503 7.0474 -2.0057 37 1 4.4868 9.6470 -0.1057 38 1 5.3802 10.8729 -1.0366 39 1 4.3389 9.7001 -1.8787 40 1 7.7708 12.2189 -1.9304 41 1 4.9304 5.3236 -2.1434 42 1 4.1198 3.0014 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = -44.886000 kcal Electronic energy + Delta-G solvation = -20275.045246 eV Core-core repulsion = 17218.625075 eV Total energy + Delta-G solvation = -3056.420172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81616 -38.22186 -35.88468 -34.79804 -32.73309 -32.16226 -30.87127 -29.39701 -28.14421 -25.26421 -24.75225 -22.57607 -22.26177 -21.33144 -20.66880 -19.39288 -17.91653 -16.10400 -15.98527 -15.45809 -15.23168 -14.82466 -14.43780 -14.38684 -14.11943 -13.91422 -13.49291 -13.13512 -13.05249 -12.80776 -12.46515 -12.34601 -11.85787 -11.60443 -11.57996 -11.39479 -11.09387 -11.00610 -10.95019 -10.90559 -10.75941 -10.72282 -10.32551 -10.22907 -9.12237 -9.04462 -8.91143 -8.63239 -8.54406 -7.89244 -6.11740 -4.21293 1.04850 1.45668 3.25952 3.30946 3.31616 3.33067 4.07452 4.19882 4.38402 4.47589 4.60943 4.77995 4.83559 4.95816 5.01668 5.09801 5.20338 5.37691 5.40204 5.41651 5.45797 5.49725 5.54227 5.69198 5.72143 5.84924 5.94218 5.98864 6.06532 6.08520 6.40996 6.54801 6.57655 6.84066 6.96478 6.99093 7.15637 7.45509 7.56883 7.70009 7.92086 8.15092 8.65830 8.77920 9.11023 9.46082 10.94292 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.003030 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.197147 B = 9238.419667 C = 9622.754139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.070 4.070 6 C -0.128 4.128 7 C -0.063 4.063 8 C -0.125 4.125 9 C 0.541 3.459 10 O -0.553 6.553 11 N -0.702 5.702 12 C 0.264 3.736 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.086 4.086 24 C -0.127 4.127 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.388 0.612 37 H 0.015 0.985 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 -20.563 1.510 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.119 4.119 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.082 4.082 8 C -0.128 4.128 9 C 0.326 3.674 10 O -0.433 6.433 11 N -0.349 5.349 12 C 0.162 3.838 13 H 0.068 0.932 14 C -0.205 4.205 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.104 4.104 24 C -0.145 4.145 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.221 0.779 37 H 0.034 0.966 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.978 -19.891 2.272 22.368 hybrid contribution 0.433 0.085 -1.322 1.393 sum -9.545 -19.806 0.950 22.006 Atomic orbital electron populations 1.21781 0.95902 1.01484 1.01954 1.21548 0.95884 0.96843 1.01972 1.21618 0.94280 0.96699 1.02684 1.20647 0.95681 0.92621 1.02912 1.20008 0.97774 0.96008 0.93243 1.20966 1.01289 0.94817 0.97560 1.21286 0.95046 0.93811 0.98048 1.20324 1.02969 0.95370 0.94120 1.18273 0.78767 0.85409 0.84938 1.90718 1.53310 1.67899 1.31355 1.46496 1.64749 1.17066 1.06635 1.18779 0.92236 0.74610 0.98155 0.93246 1.22078 0.97724 1.03987 0.96759 1.21169 1.35652 0.98050 1.02437 0.92135 1.24888 0.95918 0.95834 0.97065 1.69893 1.44219 1.03963 1.33972 0.86496 0.80006 0.77382 0.83131 1.20153 1.21107 1.20167 1.21385 0.96910 0.94648 0.97501 1.20928 1.01192 0.94753 0.97585 0.92705 0.92881 0.92713 0.92032 0.92047 0.91710 0.91697 0.90956 0.90987 0.85847 0.84810 0.77870 0.96589 0.89086 0.95434 0.92495 0.85429 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.87 5.20 -26.73 -0.14 -1.01 16 4 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 5 C -0.07 -0.77 5.14 -104.53 -0.54 -1.30 16 6 C -0.13 -1.54 9.68 -39.64 -0.38 -1.92 16 7 C -0.06 -0.95 9.60 -39.18 -0.38 -1.33 16 8 C -0.12 -2.10 5.87 -104.97 -0.62 -2.72 16 9 C 0.54 11.58 7.74 -12.33 -0.10 11.48 16 10 O -0.55 -13.86 16.01 5.31 0.09 -13.78 16 11 N -0.70 -15.27 5.02 -55.88 -0.28 -15.56 16 12 C 0.26 6.88 2.56 -69.08 -0.18 6.70 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 15 C -0.53 -14.34 8.72 -34.44 -0.30 -14.64 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 18 N -0.88 -25.08 11.33 55.43 0.63 -24.45 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.09 -1.19 9.54 -39.19 -0.37 -1.57 16 24 C -0.13 -1.47 9.68 -39.64 -0.38 -1.85 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 2.06 7.65 -52.49 -0.40 1.66 16 36 H 0.39 7.28 6.57 -40.82 -0.27 7.01 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 2.49 6.08 -51.93 -0.32 2.17 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.13 1.62 6.41 -52.49 -0.34 1.28 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -30.88 348.59 -9.15 -40.03 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.75 Total: 4.98 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -3.07 Total: -12.20 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.35 Total: -40.01 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -9.15 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.857 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds