Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46527 * 2 1 4 4 C 1.53004 * 109.46764 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47228 * 180.02562 * 4 3 2 6 6 C 1.38351 * 119.85608 * 89.99385 * 5 4 3 7 7 C 1.37962 * 120.14603 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.85187 * 0.02593 * 7 6 5 9 9 C 1.47841 * 120.14691 * 179.97438 * 8 7 6 10 10 O 1.21560 * 120.00155 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00513 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00348 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47197 * 34.99139 * 12 11 9 14 14 C 1.53005 * 109.46437 * 274.99648 * 12 11 9 15 15 C 1.50701 * 109.47260 * 155.00133 * 12 11 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 C 1.39578 * 119.70971 * 0.25239 * 8 7 6 24 24 C 1.37955 * 119.85210 * 359.46740 * 23 8 7 25 25 H 1.09003 * 109.47429 * 60.00529 * 1 2 3 26 26 H 1.09003 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47468 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47009 * 240.00107 * 2 1 3 29 29 H 1.08993 * 109.47187 * 119.99976 * 2 1 3 30 30 H 1.09000 * 109.47389 * 60.00339 * 3 2 1 31 31 H 1.09001 * 109.47290 * 299.99221 * 3 2 1 32 32 H 1.09001 * 109.47536 * 59.99651 * 4 3 2 33 33 H 1.09003 * 109.47124 * 299.99429 * 4 3 2 34 34 H 1.07996 * 119.93200 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.07693 * 179.97438 * 7 6 5 36 36 H 0.97000 * 119.99698 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47069 * 60.00420 * 14 12 11 38 38 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 39 39 H 1.08995 * 109.47438 * 299.99560 * 14 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.07081 * 179.72901 * 23 8 7 42 42 H 1.08003 * 119.92643 * 180.27835 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.3021 3.5122 1.2002 7 6 4.7625 4.8127 1.2077 8 6 4.9957 5.4742 0.0010 9 6 5.4885 6.8680 0.0015 10 8 5.6919 7.4404 1.0544 11 7 5.7122 7.5042 -1.1654 12 6 6.2010 8.8852 -1.1649 13 1 6.8786 9.0305 -0.3236 14 6 5.0165 9.8453 -1.0374 15 6 6.9334 9.1594 -2.4531 16 1 7.0259 8.3825 -3.1976 17 6 7.4907 10.4001 -2.6786 18 7 7.3784 11.3462 -1.7719 19 14 8.4053 10.7376 -4.2721 20 1 7.4853 10.5433 -5.4215 21 1 8.9049 12.1361 -4.2694 22 1 9.5522 9.8020 -4.3922 23 6 4.7561 4.8159 -1.2063 24 6 4.3013 3.5135 -1.1998 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9288 0.8892 34 1 4.1209 2.9994 2.1332 35 1 4.9412 5.3181 2.1453 36 1 5.5503 7.0474 -2.0057 37 1 4.4868 9.6470 -0.1057 38 1 5.3802 10.8729 -1.0366 39 1 4.3389 9.7001 -1.8787 40 1 7.7708 12.2189 -1.9304 41 1 4.9304 5.3236 -2.1434 42 1 4.1198 3.0014 -2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = -61.980118 kcal Electronic energy + Delta-G solvation = -20275.786503 eV Core-core repulsion = 17218.625075 eV Total energy + Delta-G solvation = -3057.161428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16380 -39.60556 -36.81911 -36.51616 -34.46433 -33.29110 -31.98336 -30.95707 -29.30708 -27.37388 -25.70158 -23.74967 -23.42197 -22.28972 -21.79016 -21.03648 -19.50720 -17.88431 -17.35567 -16.64785 -16.38022 -16.18135 -15.91356 -15.53144 -15.41549 -14.88384 -14.64223 -14.53265 -14.25574 -13.82058 -13.71906 -13.54282 -13.38760 -13.01011 -12.89211 -12.76072 -12.57190 -12.29804 -12.23218 -12.16483 -11.98132 -11.82345 -11.58777 -11.33461 -11.15704 -10.86544 -10.61187 -9.94705 -9.92630 -9.57144 -8.19167 -6.37586 -0.10510 0.43463 1.44263 1.46990 1.54827 1.94619 2.32555 2.56968 2.91190 3.11104 3.70653 3.84403 3.94975 4.04420 4.15920 4.22609 4.38581 4.42544 4.47013 4.64966 4.69383 4.76990 4.87853 4.88233 4.95589 4.98737 5.04454 5.07739 5.11042 5.21987 5.34918 5.35872 5.37701 5.41579 5.47146 5.55857 5.56247 5.64855 5.66114 5.87000 5.98350 6.05568 6.68661 6.88871 7.28335 7.46369 8.87328 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.003030 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.197147 B = 9238.419667 C = 9622.754139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.078 4.078 5 C -0.055 4.055 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.155 4.155 9 C 0.537 3.463 10 O -0.602 6.602 11 N -0.698 5.698 12 C 0.269 3.731 13 H -0.002 1.002 14 C -0.133 4.133 15 C -0.549 4.549 16 H 0.074 0.926 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.085 4.085 24 C -0.122 4.122 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.404 0.596 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -23.632 -0.502 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.055 4.055 6 C -0.142 4.142 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.325 3.675 10 O -0.486 6.486 11 N -0.347 5.347 12 C 0.166 3.834 13 H 0.016 0.984 14 C -0.192 4.192 15 C -0.587 4.587 16 H 0.092 0.908 17 C -0.187 4.187 18 N -0.555 5.555 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.104 4.104 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.240 0.760 37 H 0.029 0.971 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.698 -23.001 0.236 25.368 hybrid contribution 0.592 0.922 -0.627 1.262 sum -10.106 -22.079 -0.390 24.285 Atomic orbital electron populations 1.21801 0.96012 1.01862 1.01688 1.21525 0.95781 0.96042 1.02609 1.21587 0.93820 0.97455 1.02197 1.20723 0.95831 0.90493 1.04474 1.20441 0.95300 0.97299 0.92497 1.21231 1.00160 0.93398 0.99457 1.21306 0.96113 0.95263 0.96899 1.19991 1.06526 0.93055 0.96274 1.19028 0.77475 0.87144 0.83814 1.90675 1.55419 1.69564 1.32916 1.46227 1.64846 1.15740 1.07844 1.18406 0.91661 0.77025 0.96310 0.98447 1.21902 0.97633 1.02652 0.97024 1.21486 1.35909 0.98678 1.02655 0.90760 1.25848 0.96654 0.95542 1.00630 1.70049 1.45041 1.04393 1.36067 0.85339 0.78750 0.77053 0.78841 1.18670 1.21088 1.19549 1.21519 0.96644 0.95693 0.96540 1.21299 0.99711 0.93633 0.99314 0.92943 0.92224 0.93059 0.91315 0.91487 0.92407 0.92095 0.89282 0.89664 0.83205 0.86415 0.75981 0.97116 0.91198 0.93917 0.92442 0.84486 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.16 5.93 30.59 0.18 -0.98 16 3 C -0.11 -1.33 5.20 30.60 0.16 -1.17 16 4 C -0.08 -0.93 5.34 29.85 0.16 -0.77 16 5 C -0.06 -1.02 5.14 -19.81 -0.10 -1.12 16 6 C -0.12 -2.73 9.68 22.23 0.22 -2.52 16 7 C -0.08 -2.33 9.60 22.53 0.22 -2.12 16 8 C -0.16 -5.30 5.87 -20.09 -0.12 -5.42 16 9 C 0.54 24.06 7.74 86.79 0.67 24.73 16 10 O -0.60 -32.31 16.01 -3.90 -0.06 -32.37 16 11 N -0.70 -31.28 5.02 -448.97 -2.25 -33.54 16 12 C 0.27 14.63 2.56 44.25 0.11 14.74 16 13 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 14 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 15 C -0.55 -29.76 8.72 25.60 0.22 -29.54 16 16 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 17 C 0.01 0.73 5.31 84.65 0.45 1.18 16 18 N -0.92 -53.48 11.33 21.45 0.24 -53.24 16 19 Si 0.98 42.32 29.54 68.60 2.03 44.34 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C -0.09 -2.24 9.54 22.53 0.21 -2.02 16 24 C -0.12 -2.41 9.68 22.23 0.22 -2.19 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.12 3.86 7.65 -2.91 -0.02 3.84 16 36 H 0.40 15.16 6.57 -92.71 -0.61 14.55 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 3.99 6.08 -2.38 -0.01 3.97 16 39 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.14 3.23 6.41 -2.91 -0.02 3.21 16 42 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -69.98 348.59 4.32 -65.66 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.38 Total: 23.57 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 3.98 Total: -14.43 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.01 Total: -86.78 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.06 Total: -32.37 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -69.98 4.32 -65.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.681 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds