Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47218 * 325.00306 * 12 11 9 14 14 C 1.52997 * 109.46842 * 85.00054 * 12 11 9 15 15 C 1.50698 * 109.47244 * 205.00033 * 12 11 9 16 16 H 1.08003 * 119.99495 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00343 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99773 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00276 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46900 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47056 * 119.99246 * 19 17 15 22 22 H 1.48495 * 109.46736 * 239.99370 * 19 17 15 23 23 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 24 24 C 1.37958 * 119.84937 * 0.02562 * 23 8 7 25 25 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 27 27 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 28 28 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 29 29 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 30 30 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 31 31 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 32 32 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 34 34 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 36 36 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47434 * 59.99993 * 14 12 11 38 38 H 1.09006 * 109.47335 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47346 * 299.99953 * 14 12 11 40 40 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.07575 * 180.02562 * 23 8 7 42 42 H 1.08006 * 119.92205 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 1 6.8776 9.0307 0.3295 14 6 5.0160 9.8441 1.0459 15 6 6.9344 9.1571 2.4590 16 1 7.0278 8.3792 3.2024 17 6 7.4862 10.3996 2.6882 18 7 7.3729 11.3466 1.7826 19 14 8.3962 10.7376 4.2842 20 1 8.3835 9.5166 5.1293 21 1 9.7999 11.1169 3.9829 22 1 7.7280 11.8481 5.0092 23 6 4.7613 4.8129 1.2092 24 6 4.3019 3.5121 1.2016 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.1124 3.0041 -2.1319 35 1 4.9411 5.3199 -2.1420 36 1 5.5508 7.0453 2.0104 37 1 4.3392 9.6977 1.8876 38 1 5.3793 10.8718 1.0468 39 1 4.4854 9.6467 0.1144 40 1 7.7614 12.2207 1.9436 41 1 4.9393 5.3185 2.1468 42 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = -44.916305 kcal Electronic energy + Delta-G solvation = -20275.620709 eV Core-core repulsion = 17219.199224 eV Total energy + Delta-G solvation = -3056.421486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81673 -38.22323 -35.88511 -34.80151 -32.73393 -32.16311 -30.87153 -29.39687 -28.14377 -25.26767 -24.75269 -22.57605 -22.26221 -21.33145 -20.67084 -19.39401 -17.91723 -16.10677 -15.98842 -15.45820 -15.23317 -14.82544 -14.43757 -14.38908 -14.11736 -13.91031 -13.49302 -13.13562 -13.05182 -12.80911 -12.46899 -12.34884 -11.86135 -11.61165 -11.58041 -11.39548 -11.09112 -11.00813 -10.95706 -10.90578 -10.75887 -10.72421 -10.30128 -10.23809 -9.12401 -9.03152 -8.91145 -8.63209 -8.54990 -7.89386 -6.12294 -4.21581 1.04852 1.45683 3.23792 3.31091 3.32284 3.34455 4.07465 4.19860 4.38136 4.47521 4.60937 4.78033 4.83579 4.95831 5.01656 5.09810 5.20006 5.37691 5.40212 5.41657 5.45804 5.49707 5.54203 5.69206 5.72172 5.84945 5.94215 5.98864 6.06538 6.08537 6.40998 6.54800 6.57666 6.83845 6.96446 6.99026 7.15644 7.45382 7.56973 7.69992 7.92034 8.14969 8.65819 8.78016 9.11005 9.45901 10.93801 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.003030 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.524304 B = 9237.765197 C = 9622.930355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.081 4.081 5 C -0.070 4.070 6 C -0.128 4.128 7 C -0.063 4.063 8 C -0.125 4.125 9 C 0.541 3.459 10 O -0.553 6.553 11 N -0.702 5.702 12 C 0.263 3.737 13 H 0.050 0.950 14 C -0.147 4.147 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.086 4.086 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.388 0.612 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -20.592 -1.524 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.119 4.119 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.082 4.082 8 C -0.128 4.128 9 C 0.326 3.674 10 O -0.433 6.433 11 N -0.350 5.350 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.206 4.206 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.104 4.104 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.221 0.779 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.980 -19.929 -2.281 22.404 hybrid contribution 0.427 0.108 1.312 1.384 sum -9.553 -19.821 -0.968 22.024 Atomic orbital electron populations 1.21779 0.95902 1.01485 1.01954 1.21550 0.95884 0.96844 1.01972 1.21616 0.94281 0.96701 1.02685 1.20647 0.95677 0.92623 1.02912 1.20010 0.97793 0.95986 0.93242 1.20967 1.01271 0.94828 0.97567 1.21284 0.95036 0.93833 0.98041 1.20325 1.03000 0.95343 0.94119 1.18272 0.78757 0.85419 0.84932 1.90715 1.53304 1.67850 1.31404 1.46495 1.64753 1.17070 1.06633 1.18786 0.92251 0.74617 0.98198 0.93236 1.22079 0.97714 1.04015 0.96761 1.21244 1.35534 0.97917 1.02445 0.92030 1.24897 0.95934 0.95847 0.97089 1.69917 1.44407 1.03816 1.33906 0.86381 0.79438 0.78282 0.82925 1.19735 1.20859 1.20863 1.21386 0.96903 0.94648 0.97508 1.20927 1.01164 0.94787 0.97578 0.92879 0.92705 0.92713 0.92048 0.92032 0.91699 0.91712 0.90980 0.90962 0.85847 0.84810 0.77865 0.95445 0.89058 0.96584 0.92613 0.85427 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.87 5.20 -26.73 -0.14 -1.01 16 4 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 5 C -0.07 -0.77 5.14 -104.53 -0.54 -1.30 16 6 C -0.13 -1.54 9.68 -39.64 -0.38 -1.92 16 7 C -0.06 -0.95 9.60 -39.19 -0.38 -1.33 16 8 C -0.12 -2.10 5.87 -104.97 -0.62 -2.72 16 9 C 0.54 11.57 7.74 -12.33 -0.10 11.48 16 10 O -0.55 -13.86 16.01 5.32 0.09 -13.77 16 11 N -0.70 -15.27 5.02 -55.88 -0.28 -15.55 16 12 C 0.26 6.86 2.56 -69.08 -0.18 6.68 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 15 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.09 -1.19 9.54 -39.18 -0.37 -1.57 16 24 C -0.13 -1.47 9.68 -39.64 -0.38 -1.85 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.13 2.06 7.65 -52.49 -0.40 1.66 16 36 H 0.39 7.28 6.57 -40.82 -0.27 7.01 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.13 1.62 6.41 -52.49 -0.34 1.28 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -30.91 348.57 -9.15 -40.06 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.75 Total: 4.93 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -3.07 Total: -12.20 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.35 Total: -39.99 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.91 -9.15 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.857 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds