Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47218 * 325.00306 * 12 11 9 14 14 C 1.52997 * 109.46842 * 85.00054 * 12 11 9 15 15 C 1.50698 * 109.47244 * 205.00033 * 12 11 9 16 16 H 1.08003 * 119.99495 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00343 * 180.02562 * 15 12 11 18 18 N 1.31520 * 119.99773 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00276 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46900 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47056 * 119.99246 * 19 17 15 22 22 H 1.48495 * 109.46736 * 239.99370 * 19 17 15 23 23 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 24 24 C 1.37958 * 119.84937 * 0.02562 * 23 8 7 25 25 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 27 27 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 28 28 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 29 29 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 30 30 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 31 31 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 32 32 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 33 33 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 34 34 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 36 36 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47434 * 59.99993 * 14 12 11 38 38 H 1.09006 * 109.47335 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47346 * 299.99953 * 14 12 11 40 40 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.07575 * 180.02562 * 23 8 7 42 42 H 1.08006 * 119.92205 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 1 6.8776 9.0307 0.3295 14 6 5.0160 9.8441 1.0459 15 6 6.9344 9.1571 2.4590 16 1 7.0278 8.3792 3.2024 17 6 7.4862 10.3996 2.6882 18 7 7.3729 11.3466 1.7826 19 14 8.3962 10.7376 4.2842 20 1 8.3835 9.5166 5.1293 21 1 9.7999 11.1169 3.9829 22 1 7.7280 11.8481 5.0092 23 6 4.7613 4.8129 1.2092 24 6 4.3019 3.5121 1.2016 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 4.1124 3.0041 -2.1319 35 1 4.9411 5.3199 -2.1420 36 1 5.5508 7.0453 2.0104 37 1 4.3392 9.6977 1.8876 38 1 5.3793 10.8718 1.0468 39 1 4.4854 9.6467 0.1144 40 1 7.7614 12.2207 1.9436 41 1 4.9393 5.3185 2.1468 42 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -62.031725 kcal Electronic energy + Delta-G solvation = -20276.362890 eV Core-core repulsion = 17219.199224 eV Total energy + Delta-G solvation = -3057.163666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16441 -39.60620 -36.82195 -36.51677 -34.46555 -33.29042 -31.98344 -30.95650 -29.30652 -27.37801 -25.70140 -23.75056 -23.42207 -22.29034 -21.79071 -21.03654 -19.50831 -17.89177 -17.35774 -16.64697 -16.37996 -16.17851 -15.91436 -15.53020 -15.41160 -14.88478 -14.64460 -14.53796 -14.25552 -13.82947 -13.71872 -13.54776 -13.38772 -13.00527 -12.90696 -12.76747 -12.56966 -12.31276 -12.23185 -12.13011 -11.98158 -11.82272 -11.58879 -11.33382 -11.13501 -10.86803 -10.62680 -9.94674 -9.92639 -9.57123 -8.19680 -6.37806 -0.10474 0.43494 1.44015 1.44497 1.57192 1.94649 2.32429 2.56763 2.91222 3.10828 3.70638 3.84426 3.94979 4.04441 4.15923 4.22651 4.38636 4.42544 4.47003 4.65002 4.69283 4.76997 4.87869 4.88197 4.95616 4.98773 5.04471 5.07761 5.11063 5.22017 5.34892 5.35921 5.37717 5.41586 5.47194 5.55911 5.56485 5.64835 5.66138 5.86865 5.98365 6.05616 6.68970 6.88807 7.28229 7.46304 8.87235 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.003030 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.524304 B = 9237.765197 C = 9622.930355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.078 4.078 5 C -0.055 4.055 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.155 4.155 9 C 0.537 3.463 10 O -0.602 6.602 11 N -0.698 5.698 12 C 0.269 3.731 13 H -0.002 1.002 14 C -0.134 4.134 15 C -0.547 4.547 16 H 0.074 0.926 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.976 3.024 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.277 1.277 23 C -0.085 4.085 24 C -0.122 4.122 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.404 0.596 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -23.667 0.471 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.055 4.055 6 C -0.142 4.142 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.325 3.675 10 O -0.486 6.486 11 N -0.347 5.347 12 C 0.165 3.835 13 H 0.016 0.984 14 C -0.192 4.192 15 C -0.585 4.585 16 H 0.092 0.908 17 C -0.187 4.187 18 N -0.556 5.556 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.104 4.104 24 C -0.140 4.140 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.240 0.760 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.697 -23.045 -0.264 25.408 hybrid contribution 0.586 0.949 0.623 1.278 sum -10.111 -22.095 0.359 24.301 Atomic orbital electron populations 1.21799 0.96012 1.01863 1.01688 1.21527 0.95781 0.96044 1.02608 1.21585 0.93822 0.97455 1.02200 1.20722 0.95828 0.90495 1.04474 1.20443 0.95318 0.97277 0.92496 1.21232 1.00135 0.93411 0.99464 1.21303 0.96105 0.95281 0.96891 1.19992 1.06555 0.93028 0.96271 1.19027 0.77464 0.87155 0.83808 1.90672 1.55412 1.69515 1.32961 1.46227 1.64852 1.15744 1.07839 1.18412 0.91677 0.77029 0.96346 0.98424 1.21903 0.97626 1.02677 0.97032 1.21542 1.35801 0.98513 1.02630 0.90762 1.25854 0.96662 0.95563 1.00656 1.70066 1.45219 1.04297 1.36012 0.85230 0.77632 0.78557 0.78509 1.18241 1.20932 1.20268 1.21519 0.96648 0.95684 0.96547 1.21298 0.99683 0.93670 0.99306 0.92223 0.92944 0.93057 0.91487 0.91318 0.92100 0.92403 0.89654 0.89293 0.83203 0.86413 0.75984 0.93921 0.91178 0.97109 0.92460 0.84495 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.16 5.93 30.59 0.18 -0.98 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.08 -0.93 5.34 29.85 0.16 -0.77 16 5 C -0.06 -1.02 5.14 -19.80 -0.10 -1.12 16 6 C -0.12 -2.73 9.68 22.23 0.22 -2.52 16 7 C -0.08 -2.33 9.60 22.53 0.22 -2.11 16 8 C -0.16 -5.30 5.87 -20.09 -0.12 -5.42 16 9 C 0.54 24.05 7.74 86.79 0.67 24.72 16 10 O -0.60 -32.29 16.01 -3.87 -0.06 -32.35 16 11 N -0.70 -31.27 5.02 -448.99 -2.25 -33.53 16 12 C 0.27 14.58 2.56 44.24 0.11 14.70 16 13 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 14 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 15 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 16 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 17 C 0.01 0.69 5.30 84.65 0.45 1.14 16 18 N -0.92 -53.47 11.32 21.45 0.24 -53.22 16 19 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 C -0.09 -2.24 9.54 22.53 0.21 -2.02 16 24 C -0.12 -2.41 9.68 22.23 0.22 -2.19 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.12 3.86 7.65 -2.91 -0.02 3.84 16 36 H 0.40 15.16 6.57 -92.71 -0.61 14.56 16 37 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 4.00 6.07 -2.38 -0.01 3.98 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.14 3.23 6.41 -2.91 -0.02 3.21 16 42 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.00 348.57 4.32 -65.69 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.38 Total: 23.41 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.98 Total: -14.38 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.01 Total: -86.75 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.06 Total: -32.35 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.00 4.32 -65.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.655 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds