Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 C 1.53003 * 109.46870 * 119.99235 * 2 1 3 5 5 C 1.53004 * 109.46683 * 65.01001 * 4 2 1 6 6 N 1.46506 * 109.46822 * 179.97438 * 5 4 2 7 7 C 1.46498 * 119.99611 * 269.99549 * 6 5 4 8 8 C 1.34776 * 119.99813 * 89.99657 * 6 5 4 9 9 O 1.21584 * 120.00237 * 354.93260 * 8 6 5 10 10 C 1.47642 * 119.99578 * 174.93577 * 8 6 5 11 11 C 1.40011 * 119.89802 * 334.90113 * 10 8 6 12 12 C 1.36317 * 120.10715 * 180.25676 * 11 10 8 13 13 C 1.40891 * 119.89137 * 359.45224 * 12 11 10 14 14 C 1.41111 * 120.10572 * 180.29622 * 13 12 11 15 15 H 1.07994 * 120.00200 * 154.51694 * 14 13 12 16 16 C 1.40228 * 119.99658 * 334.52014 * 14 13 12 17 17 N 1.30651 * 120.00399 * 343.24930 * 16 14 13 18 18 Si 1.86802 * 119.99717 * 163.25063 * 16 14 13 19 19 H 1.48499 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46991 * 120.00112 * 18 16 14 21 21 H 1.48507 * 109.46785 * 239.99503 * 18 16 14 22 22 C 1.40888 * 119.79279 * 0.27726 * 13 12 11 23 23 C 1.36313 * 119.89015 * 0.02562 * 22 13 12 24 24 H 1.08995 * 109.47787 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.47594 * 60.00525 * 1 2 3 26 26 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.08988 * 109.47382 * 239.99880 * 2 1 3 28 28 H 1.08994 * 109.47005 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47240 * 299.99610 * 3 2 1 30 30 H 1.09006 * 109.47280 * 59.99873 * 3 2 1 31 31 H 1.08989 * 109.47643 * 305.00434 * 4 2 1 32 32 H 1.09005 * 109.46824 * 185.00091 * 4 2 1 33 33 H 1.08989 * 109.47544 * 59.99373 * 5 4 2 34 34 H 1.09005 * 109.46748 * 299.99137 * 5 4 2 35 35 H 1.09004 * 109.47085 * 275.89752 * 7 6 5 36 36 H 1.09000 * 109.47431 * 35.90440 * 7 6 5 37 37 H 1.09007 * 109.46569 * 155.90558 * 7 6 5 38 38 H 1.08001 * 119.94511 * 359.97438 * 11 10 8 39 39 H 1.08003 * 120.05462 * 179.72765 * 12 11 10 40 40 H 0.96995 * 119.99993 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.05484 * 180.02562 * 22 13 12 42 42 H 1.08010 * 119.94616 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 7 2.1241 -2.8860 2.3841 7 6 3.4524 -3.5039 2.3816 8 6 1.3517 -2.9529 3.4865 9 8 0.2893 -2.3627 3.5213 10 6 1.7958 -3.7429 4.6521 11 6 2.6870 -4.8081 4.4746 12 6 3.0957 -5.5436 5.5471 13 6 2.6290 -5.2232 6.8372 14 6 3.0540 -5.9776 7.9514 15 1 3.0572 -5.5327 8.9354 16 6 3.4725 -7.3051 7.7808 17 7 3.1713 -7.9493 6.6847 18 14 4.4605 -8.1524 9.1206 19 1 4.6680 -7.2130 10.2518 20 1 3.7219 -9.3485 9.5990 21 1 5.7777 -8.5692 8.5758 22 6 1.7367 -4.1468 7.0115 23 6 1.3288 -3.4210 5.9322 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1298 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2723 1.1422 35 1 3.3890 -4.4998 1.9429 36 1 4.1370 -2.8913 1.7950 37 1 3.8193 -3.5805 3.4052 38 1 3.0476 -5.0502 3.4858 39 1 3.7798 -6.3678 5.4086 40 1 3.4604 -8.8676 6.5670 41 1 1.3765 -3.8972 7.9987 42 1 0.6451 -2.5954 6.0649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611144537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -25.770200 kcal Electronic energy + Delta-G solvation = -20951.298385 eV Core-core repulsion = 17895.707136 eV Total energy + Delta-G solvation = -3055.591248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.51180 -37.37109 -36.51418 -34.77301 -33.83545 -30.80520 -29.51238 -28.95520 -27.20428 -26.44507 -25.79237 -23.42801 -21.24023 -20.95756 -20.00393 -18.80470 -17.50510 -16.38911 -15.89641 -15.40374 -15.28449 -14.73261 -14.34186 -13.86966 -13.59780 -13.54843 -13.17610 -12.91763 -12.57229 -12.50274 -12.24172 -12.21513 -11.94134 -11.79605 -11.46653 -11.37795 -11.26763 -11.17775 -10.90673 -10.80921 -10.68419 -10.56094 -10.44378 -9.99554 -9.47850 -9.33512 -8.86781 -8.18199 -7.64000 -7.50314 -6.99845 -4.57930 2.28314 2.92139 2.96102 3.01674 3.03421 3.57710 3.75940 3.84268 4.53536 4.81831 4.87087 4.92627 5.21574 5.45230 5.51465 5.54053 5.57500 5.63285 5.65811 5.73617 5.79738 5.87005 5.91745 6.01888 6.10189 6.13633 6.17197 6.20963 6.32083 6.39685 6.43958 6.79697 6.85341 6.98526 7.11457 7.15974 7.46773 7.63822 7.82364 7.88612 8.08031 8.13610 8.42937 8.66227 8.77951 9.04646 9.92459 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042465 B = 0.003415 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.212911 B = 8198.053333 C = 8450.408365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.129 4.129 5 C 0.118 3.882 6 N -0.625 5.625 7 C 0.074 3.926 8 C 0.572 3.428 9 O -0.570 6.570 10 C -0.281 4.281 11 C -0.080 4.080 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.446 4.446 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.775 5.775 18 Si 0.912 3.088 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.237 4.237 23 C -0.026 4.026 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.285 0.715 41 H 0.097 0.903 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 7.194 -9.989 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.168 4.168 5 C -0.005 4.005 6 N -0.358 5.358 7 C -0.069 4.069 8 C 0.368 3.632 9 O -0.451 6.451 10 C -0.285 4.285 11 C -0.099 4.099 12 C -0.198 4.198 13 C 0.125 3.875 14 C -0.474 4.474 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.398 5.398 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.045 4.045 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.274 7.252 -10.088 12.630 hybrid contribution 0.484 -0.594 0.478 0.903 sum 2.758 6.657 -9.610 12.012 Atomic orbital electron populations 1.21884 0.95131 1.02109 1.01469 1.21054 0.96085 0.96036 0.98065 1.21828 1.00746 0.96145 1.01588 1.22013 1.00669 0.95883 0.98244 1.21388 1.00629 0.91491 0.86953 1.47709 1.17604 1.56876 1.13649 1.22312 0.83703 0.96609 1.04238 1.18726 0.82939 0.79417 0.82133 1.90628 1.23898 1.48291 1.82255 1.18888 1.12425 1.04837 0.92387 1.21165 0.95746 0.94466 0.98519 1.21011 1.04480 1.01935 0.92419 1.17799 0.86982 0.89630 0.93121 1.19848 1.35977 0.95873 0.95657 0.89814 1.26080 0.93997 0.97827 0.96732 1.69752 1.33045 1.11258 1.25761 0.86185 0.79700 0.79373 0.81145 1.18124 1.19719 1.19433 1.20707 1.05117 1.02798 0.97060 1.20321 0.95660 0.96835 0.91665 0.92482 0.93164 0.92334 0.91450 0.92877 0.92923 0.92685 0.91305 0.92192 0.91583 0.90152 0.92974 0.92876 0.88489 0.87265 0.86218 0.90372 0.88474 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 2 C -0.09 -0.98 2.92 -90.62 -0.26 -1.25 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.13 -1.68 5.01 -26.73 -0.13 -1.81 16 5 C 0.12 1.71 5.15 -4.04 -0.02 1.69 16 6 N -0.63 -10.84 2.87 -182.76 -0.53 -11.36 16 7 C 0.07 1.08 8.69 59.85 0.52 1.60 16 8 C 0.57 12.43 7.47 -12.42 -0.09 12.34 16 9 O -0.57 -13.74 16.23 5.29 0.09 -13.66 16 10 C -0.28 -6.49 5.50 -104.73 -0.58 -7.06 16 11 C -0.08 -1.78 7.44 -39.61 -0.29 -2.08 16 12 C -0.18 -4.38 8.63 -39.27 -0.34 -4.72 16 13 C 0.13 3.26 5.57 -106.80 -0.59 2.67 16 14 C -0.45 -11.14 9.05 -37.75 -0.34 -11.48 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 17 N -0.77 -18.71 10.94 55.56 0.61 -18.10 16 18 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 22 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 23 C -0.03 -0.61 9.52 -39.61 -0.38 -0.99 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.07 0.64 8.14 -51.94 -0.42 0.22 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.07 8.14 -51.94 -0.42 0.65 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.79 8.07 -51.94 -0.42 0.37 16 34 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 35 H 0.05 0.71 7.12 -51.93 -0.37 0.34 16 36 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 37 H 0.10 1.59 5.12 -51.93 -0.27 1.32 16 38 H 0.11 2.10 4.45 -52.49 -0.23 1.86 16 39 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 40 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.10 2.22 7.84 -52.48 -0.41 1.81 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -28.19 337.69 -8.53 -36.72 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.45 Total: 6.91 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.31 Total: -17.91 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.08 Total: -29.46 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.19 -8.53 -36.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611144537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.949 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds