Wall clock time and date at job start Mon Mar 30 2020 02:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 C 1.53003 * 109.46870 * 119.99235 * 2 1 3 5 5 C 1.53004 * 109.46683 * 65.01001 * 4 2 1 6 6 N 1.46506 * 109.46822 * 179.97438 * 5 4 2 7 7 C 1.46498 * 119.99611 * 269.99549 * 6 5 4 8 8 C 1.34776 * 119.99813 * 89.99657 * 6 5 4 9 9 O 1.21584 * 120.00237 * 354.93260 * 8 6 5 10 10 C 1.47642 * 119.99578 * 174.93577 * 8 6 5 11 11 C 1.40011 * 119.89802 * 334.90113 * 10 8 6 12 12 C 1.36317 * 120.10715 * 180.25676 * 11 10 8 13 13 C 1.40891 * 119.89137 * 359.45224 * 12 11 10 14 14 C 1.41111 * 120.10572 * 180.29622 * 13 12 11 15 15 H 1.07994 * 120.00200 * 154.51694 * 14 13 12 16 16 C 1.40228 * 119.99658 * 334.52014 * 14 13 12 17 17 N 1.30651 * 120.00399 * 343.24930 * 16 14 13 18 18 Si 1.86802 * 119.99717 * 163.25063 * 16 14 13 19 19 H 1.48499 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46991 * 120.00112 * 18 16 14 21 21 H 1.48507 * 109.46785 * 239.99503 * 18 16 14 22 22 C 1.40888 * 119.79279 * 0.27726 * 13 12 11 23 23 C 1.36313 * 119.89015 * 0.02562 * 22 13 12 24 24 H 1.08995 * 109.47787 * 300.00173 * 1 2 3 25 25 H 1.09000 * 109.47594 * 60.00525 * 1 2 3 26 26 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 27 27 H 1.08988 * 109.47382 * 239.99880 * 2 1 3 28 28 H 1.08994 * 109.47005 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47240 * 299.99610 * 3 2 1 30 30 H 1.09006 * 109.47280 * 59.99873 * 3 2 1 31 31 H 1.08989 * 109.47643 * 305.00434 * 4 2 1 32 32 H 1.09005 * 109.46824 * 185.00091 * 4 2 1 33 33 H 1.08989 * 109.47544 * 59.99373 * 5 4 2 34 34 H 1.09005 * 109.46748 * 299.99137 * 5 4 2 35 35 H 1.09004 * 109.47085 * 275.89752 * 7 6 5 36 36 H 1.09000 * 109.47431 * 35.90440 * 7 6 5 37 37 H 1.09007 * 109.46569 * 155.90558 * 7 6 5 38 38 H 1.08001 * 119.94511 * 359.97438 * 11 10 8 39 39 H 1.08003 * 120.05462 * 179.72765 * 12 11 10 40 40 H 0.96995 * 119.99993 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.05484 * 180.02562 * 22 13 12 42 42 H 1.08010 * 119.94616 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6353 -2.1954 1.1881 6 7 2.1241 -2.8860 2.3841 7 6 3.4524 -3.5039 2.3816 8 6 1.3517 -2.9529 3.4865 9 8 0.2893 -2.3627 3.5213 10 6 1.7958 -3.7429 4.6521 11 6 2.6870 -4.8081 4.4746 12 6 3.0957 -5.5436 5.5471 13 6 2.6290 -5.2232 6.8372 14 6 3.0540 -5.9776 7.9514 15 1 3.0572 -5.5327 8.9354 16 6 3.4725 -7.3051 7.7808 17 7 3.1713 -7.9493 6.6847 18 14 4.4605 -8.1524 9.1206 19 1 4.6680 -7.2130 10.2518 20 1 3.7219 -9.3485 9.5990 21 1 5.7777 -8.5692 8.5758 22 6 1.7367 -4.1468 7.0115 23 6 1.3288 -3.4210 5.9322 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1298 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2723 1.1422 35 1 3.3890 -4.4998 1.9429 36 1 4.1370 -2.8913 1.7950 37 1 3.8193 -3.5805 3.4052 38 1 3.0476 -5.0502 3.4858 39 1 3.7798 -6.3678 5.4086 40 1 3.4604 -8.8676 6.5670 41 1 1.3765 -3.8972 7.9987 42 1 0.6451 -2.5954 6.0649 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611144537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:06 Heat of formation + Delta-G solvation = -39.333403 kcal Electronic energy + Delta-G solvation = -20951.886529 eV Core-core repulsion = 17895.707136 eV Total energy + Delta-G solvation = -3056.179393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11448 -39.03542 -37.75381 -36.19623 -35.59055 -32.40651 -31.36277 -30.28557 -28.05254 -27.93777 -27.34513 -24.77754 -22.88943 -22.77709 -20.91759 -20.38598 -19.34522 -17.96865 -17.50159 -16.96900 -16.46109 -15.99440 -15.88721 -15.37629 -14.96675 -14.69733 -14.58915 -14.39406 -14.26133 -13.75271 -13.67143 -13.58911 -13.22454 -13.11483 -12.96225 -12.82427 -12.72487 -12.36897 -12.33235 -12.17133 -11.81765 -11.73524 -11.55957 -11.44737 -11.24786 -11.12202 -10.58360 -9.63467 -9.48905 -9.33057 -8.76712 -6.47092 0.48899 1.14281 1.39423 1.42609 1.55745 2.07680 2.18088 2.23355 2.74874 3.66778 3.83701 3.92443 4.05377 4.06886 4.21344 4.37957 4.42833 4.48634 4.52782 4.59889 4.73202 4.78584 4.82155 4.93742 4.94481 4.96222 5.02422 5.05095 5.10541 5.13643 5.18018 5.30767 5.31715 5.44288 5.51194 5.60152 5.72119 5.83816 5.97434 6.01763 6.24098 6.53043 6.56352 6.79342 6.90638 7.39124 8.18951 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042465 B = 0.003415 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.212911 B = 8198.053333 C = 8450.408365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.122 4.122 5 C 0.114 3.886 6 N -0.617 5.617 7 C 0.067 3.933 8 C 0.567 3.433 9 O -0.604 6.604 10 C -0.291 4.291 11 C -0.067 4.067 12 C -0.198 4.198 13 C 0.101 3.899 14 C -0.477 4.477 15 H 0.083 0.917 16 C 0.038 3.962 17 N -0.802 5.802 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.253 4.253 23 C -0.038 4.038 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.296 0.704 41 H 0.102 0.898 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 6.810 -11.800 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.161 4.161 5 C -0.008 4.008 6 N -0.348 5.348 7 C -0.074 4.074 8 C 0.361 3.639 9 O -0.488 6.488 10 C -0.295 4.295 11 C -0.085 4.085 12 C -0.217 4.217 13 C 0.098 3.902 14 C -0.504 4.504 15 H 0.101 0.899 16 C -0.181 4.181 17 N -0.426 5.426 18 Si 0.808 3.192 19 H -0.181 1.181 20 H -0.190 1.190 21 H -0.183 1.183 22 C -0.272 4.272 23 C -0.057 4.057 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.975 6.878 -11.940 14.341 hybrid contribution -0.067 -0.425 0.936 1.030 sum 3.908 6.453 -11.004 13.342 Atomic orbital electron populations 1.21888 0.95726 1.01541 1.01482 1.21052 0.95535 0.96703 0.97444 1.21816 1.01266 0.95301 1.01777 1.21937 1.01140 0.94837 0.98155 1.21644 0.99918 0.92473 0.86762 1.47754 1.17933 1.56060 1.13091 1.22460 0.82679 0.98307 1.03982 1.18588 0.82989 0.79247 0.83048 1.90605 1.25480 1.49590 1.83098 1.19189 1.12241 1.05261 0.92824 1.21439 0.94483 0.93130 0.99493 1.21044 1.05287 1.02560 0.92795 1.18147 0.87612 0.90290 0.94141 1.20097 1.37650 0.97110 0.95583 0.89916 1.26909 0.94262 0.97749 0.99135 1.69770 1.33333 1.12107 1.27381 0.85068 0.78236 0.78033 0.77907 1.18140 1.19007 1.18285 1.20836 1.05612 1.03198 0.97572 1.20466 0.95924 0.96977 0.92308 0.94397 0.91224 0.93216 0.89265 0.92035 0.91383 0.93912 0.94765 0.90987 0.87850 0.91992 0.91128 0.89072 0.90414 0.84022 0.86748 0.89277 0.88019 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.95 71.98 0.64 -2.42 16 2 C -0.09 -1.65 2.92 -10.79 -0.03 -1.68 16 3 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 4 C -0.12 -2.97 5.01 30.60 0.15 -2.81 16 5 C 0.11 3.05 5.15 86.38 0.44 3.49 16 6 N -0.62 -20.37 2.87 -850.40 -2.44 -22.81 16 7 C 0.07 1.76 8.69 127.77 1.11 2.87 16 8 C 0.57 24.68 7.47 86.73 0.65 25.33 16 9 O -0.60 -29.82 16.23 -3.98 -0.06 -29.88 16 10 C -0.29 -13.59 5.50 -19.93 -0.11 -13.70 16 11 C -0.07 -2.97 7.44 22.25 0.17 -2.80 16 12 C -0.20 -9.79 8.63 22.47 0.19 -9.60 16 13 C 0.10 5.32 5.57 -21.28 -0.12 5.20 16 14 C -0.48 -24.37 9.05 23.46 0.21 -24.16 16 15 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 16 C 0.04 1.77 5.15 85.35 0.44 2.21 16 17 N -0.80 -38.73 10.94 21.87 0.24 -38.49 16 18 Si 0.99 35.06 29.59 68.60 2.03 37.09 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 22 C -0.25 -12.81 9.73 22.47 0.22 -12.59 16 23 C -0.04 -1.85 9.52 22.25 0.21 -1.64 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.10 6.57 -2.39 -0.02 1.08 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 34 H 0.06 1.92 5.92 -2.38 -0.01 1.91 16 35 H 0.07 1.64 7.12 -2.38 -0.02 1.62 16 36 H 0.09 1.75 8.12 -2.39 -0.02 1.73 16 37 H 0.08 2.39 5.12 -2.38 -0.01 2.38 16 38 H 0.14 5.19 4.45 -2.91 -0.01 5.18 16 39 H 0.11 5.72 6.18 -2.91 -0.02 5.71 16 40 H 0.30 12.65 8.29 -92.71 -0.77 11.88 16 41 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.10 4.66 7.84 -2.91 -0.02 4.64 16 Total: -1.00 -62.89 337.69 5.61 -57.28 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 1.00 Total: 30.83 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 4.85 Total: -34.02 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -2.20 Total: -61.30 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.06 Total: -29.88 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Total: -62.89 5.61 -57.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611144537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.948 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds