Wall clock time and date at job start Mon Mar 30 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38368 * 119.85101 * 269.72678 * 5 4 2 7 7 C 1.37966 * 120.14086 * 179.72820 * 6 5 4 8 8 C 1.39575 * 119.85070 * 0.54585 * 7 6 5 9 9 C 1.47848 * 120.14220 * 179.70777 * 8 7 6 10 10 O 1.21552 * 120.00131 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99809 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99841 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47038 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47000 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00648 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99926 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00049 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99945 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47524 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47042 * 120.00314 * 18 16 14 21 21 H 1.48500 * 109.47199 * 239.99772 * 18 16 14 22 22 C 1.39578 * 119.71575 * 359.72784 * 8 7 6 23 23 C 1.37954 * 119.84811 * 0.02562 * 22 8 7 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 1.07991 * 119.92661 * 0.02562 * 6 5 4 34 34 H 1.07991 * 120.07009 * 180.25387 * 7 6 5 35 35 H 0.97002 * 120.00048 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.46826 * 299.99440 * 12 11 9 37 37 H 1.08998 * 109.46959 * 59.99773 * 12 11 9 38 38 H 1.09008 * 109.46834 * 299.99868 * 13 12 11 39 39 H 1.09001 * 109.47175 * 59.99604 * 13 12 11 40 40 H 0.97000 * 120.00368 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.07544 * 179.97438 * 22 8 7 42 42 H 1.08004 * 119.92272 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3270 0.1712 -1.7338 7 6 5.7025 0.0810 -1.6768 8 6 6.3018 -1.0282 -1.0779 9 6 7.7752 -1.1346 -1.0190 10 8 8.2944 -2.1019 -0.4973 11 7 8.5428 -0.1590 -1.5439 12 6 10.0028 -0.2647 -1.4861 13 6 10.6297 0.9646 -2.1470 14 6 12.1315 0.8556 -2.0881 15 1 12.5929 -0.0041 -1.6253 16 6 12.9168 1.8537 -2.6252 17 7 12.3551 2.9004 -3.1894 18 14 14.7784 1.7189 -2.5516 19 1 15.1567 0.4551 -1.8699 20 1 15.3299 1.7225 -3.9304 21 1 15.3287 2.8724 -1.7954 22 6 5.5040 -2.0368 -0.5351 23 6 4.1297 -1.9318 -0.5942 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.8620 1.0268 -2.2004 34 1 6.3141 0.8645 -2.0989 35 1 8.1284 0.6128 -1.9607 36 1 10.3222 -0.3197 -0.4455 37 1 10.3231 -1.1637 -2.0126 38 1 10.3103 1.0201 -3.1878 39 1 10.3092 1.8635 -1.6202 40 1 12.9075 3.6028 -3.5669 41 1 5.9615 -2.8978 -0.0707 42 1 3.5113 -2.7117 -0.1749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612060938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:14 Heat of formation + Delta-G solvation = -65.856290 kcal Electronic energy + Delta-G solvation = -20094.792681 eV Core-core repulsion = 17037.463170 eV Total energy + Delta-G solvation = -3057.329512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27742 -39.78775 -36.99065 -36.65850 -34.89738 -32.85056 -31.98631 -31.27332 -28.12016 -27.87671 -26.54896 -23.83917 -23.64655 -22.71050 -21.44289 -20.77241 -19.02434 -18.50479 -17.11518 -16.68525 -16.52261 -16.45458 -15.99983 -15.70157 -15.22993 -15.20787 -14.88701 -14.65473 -14.35209 -14.24111 -13.80482 -13.35153 -13.23634 -12.98147 -12.96648 -12.83331 -12.54490 -12.50772 -12.28744 -11.98712 -11.75332 -11.70042 -11.62974 -11.46678 -11.45534 -10.96166 -10.62923 -10.16290 -9.94069 -9.63477 -8.25892 -6.36369 -0.15945 0.41648 1.40226 1.41104 1.54425 1.82380 2.18591 2.43296 2.86112 3.08835 3.64432 3.81201 3.88202 4.01556 4.08504 4.14288 4.38230 4.41667 4.43106 4.44680 4.50340 4.75789 4.80614 4.82802 4.84919 4.90110 5.05421 5.06480 5.10885 5.15579 5.21398 5.32720 5.36459 5.40597 5.46118 5.46875 5.52912 5.54429 5.65900 5.76015 5.95181 6.13614 6.54448 6.76540 7.16526 7.32939 8.86298 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.002772 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.984107 B =10096.856278 C =10690.065915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.077 4.077 5 C -0.049 4.049 6 C -0.121 4.121 7 C -0.086 4.086 8 C -0.157 4.157 9 C 0.546 3.454 10 O -0.590 6.590 11 N -0.712 5.712 12 C 0.139 3.861 13 C 0.023 3.977 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.072 4.072 23 C -0.125 4.125 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.409 0.591 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.123 0.877 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.112 -4.163 3.573 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.212 4.212 4 C -0.114 4.114 5 C -0.050 4.050 6 C -0.139 4.139 7 C -0.105 4.105 8 C -0.160 4.160 9 C 0.336 3.664 10 O -0.472 6.472 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.091 4.091 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.246 0.754 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.676 -4.660 3.843 26.377 hybrid contribution 1.326 0.457 -0.179 1.413 sum -24.351 -4.203 3.664 24.981 Atomic orbital electron populations 1.21827 0.93955 1.02257 1.02190 1.21064 0.96304 0.96136 0.97323 1.21959 1.00987 0.96083 1.02138 1.20811 0.88700 1.02574 0.99279 1.20403 0.97237 0.93010 0.94315 1.21278 0.92253 0.99893 1.00487 1.21516 0.96342 0.96061 0.96574 1.19876 0.90968 0.98987 1.06193 1.18920 0.88076 0.81982 0.77469 1.90697 1.76023 1.33400 1.47119 1.46083 1.07431 1.23700 1.59046 1.21286 0.77908 0.99407 0.99807 1.19141 0.95074 0.92050 0.95183 1.21480 0.92331 1.06258 1.38442 0.92322 1.25882 1.04120 0.94738 0.94469 1.70058 1.37366 1.10024 1.39100 0.85374 0.79053 0.78401 0.78084 1.19036 1.20129 1.20140 1.21314 0.94265 0.97278 0.96230 1.21243 0.93306 0.99246 1.00516 0.92071 0.92053 0.92588 0.91743 0.92814 0.93270 0.91785 0.89448 0.89493 0.83069 0.84617 0.75400 0.93401 0.93380 0.97192 0.97197 0.92476 0.85863 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 71.98 0.66 -0.55 16 2 C -0.09 -0.97 2.91 -10.79 -0.03 -1.00 16 3 C -0.15 -1.86 8.77 71.98 0.63 -1.23 16 4 C -0.08 -0.81 4.83 29.85 0.14 -0.67 16 5 C -0.05 -0.80 4.71 -19.81 -0.09 -0.90 16 6 C -0.12 -2.15 7.95 22.24 0.18 -1.98 16 7 C -0.09 -1.99 9.54 22.53 0.21 -1.78 16 8 C -0.16 -4.60 5.87 -20.09 -0.12 -4.71 16 9 C 0.55 20.59 7.77 86.79 0.67 21.27 16 10 O -0.59 -26.57 16.35 -3.88 -0.06 -26.64 16 11 N -0.71 -26.74 5.51 -465.97 -2.57 -29.30 16 12 C 0.14 6.27 5.61 86.38 0.48 6.75 16 13 C 0.02 1.18 5.09 29.85 0.15 1.33 16 14 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.38 5.46 84.66 0.46 0.84 16 17 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 18 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.07 -1.86 9.60 22.53 0.22 -1.64 16 23 C -0.13 -2.35 9.68 22.23 0.22 -2.14 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.72 6.28 -2.39 -0.01 0.71 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 32 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.15 1.93 8.04 -2.92 -0.02 1.90 16 34 H 0.14 2.82 6.40 -2.92 -0.02 2.81 16 35 H 0.41 13.15 6.51 -92.71 -0.60 12.55 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 41 H 0.12 3.38 7.65 -2.91 -0.02 3.36 16 42 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -68.68 348.68 4.09 -64.59 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.39 Total: 16.70 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.02 Total: -17.14 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.28 Total: -83.53 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.68 4.09 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612060938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds