Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47227 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00453 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00490 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47219 * 90.00245 * 18 16 14 20 20 H 1.48500 * 109.47393 * 209.99972 * 18 16 14 21 21 H 1.48501 * 109.47162 * 330.00289 * 18 16 14 22 22 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 23 23 C 1.37958 * 119.84937 * 0.02562 * 22 8 7 24 24 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 25 25 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 27 27 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 28 28 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 29 29 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 30 30 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 31 31 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 32 32 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 33 33 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 35 35 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 37 37 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 38 38 H 1.09005 * 109.46987 * 299.99854 * 13 12 11 39 39 H 1.08998 * 109.47290 * 60.00029 * 13 12 11 40 40 H 0.96993 * 120.00086 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.07575 * 180.02562 * 22 8 7 42 42 H 1.08006 * 119.92205 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 6.8720 10.7856 2.6146 15 1 7.0517 11.2952 1.6795 16 6 7.1007 11.4354 3.8089 17 7 6.8814 10.8150 4.9476 18 14 7.7234 13.1965 3.8097 19 1 6.5684 14.1299 3.8089 20 1 8.5473 13.4298 5.0230 21 1 8.5495 13.4301 2.5980 22 6 4.7613 4.8129 1.2092 23 6 4.3019 3.5121 1.2016 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 4.1124 3.0041 -2.1319 34 1 4.9411 5.3199 -2.1420 35 1 5.5508 7.0453 2.0104 36 1 7.1610 8.9303 0.6574 37 1 5.4828 9.5237 0.6577 38 1 5.4098 9.3186 3.1273 39 1 7.0880 8.7252 3.1279 40 1 7.0420 11.2722 5.7878 41 1 4.9393 5.3185 2.1468 42 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612061068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = -51.687606 kcal Electronic energy + Delta-G solvation = -19735.608480 eV Core-core repulsion = 16678.893368 eV Total energy + Delta-G solvation = -3056.715111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06219 -38.49081 -35.97559 -34.91284 -33.00292 -32.48856 -31.08172 -29.84488 -28.62689 -25.36770 -24.30318 -22.70477 -22.12861 -21.34364 -20.95792 -20.00098 -17.71439 -16.50026 -16.07806 -15.56263 -15.37978 -14.91786 -14.74000 -14.50591 -14.40025 -14.34921 -13.66557 -13.28753 -13.24033 -13.14764 -12.81264 -12.53309 -12.29751 -11.87779 -11.66393 -11.47721 -11.23987 -11.10925 -11.04471 -11.00201 -10.85036 -10.64529 -10.34248 -9.85418 -9.49342 -9.22530 -9.07350 -8.84676 -8.52524 -8.34114 -6.09885 -4.12661 0.84129 1.29600 3.04132 3.29410 3.35407 3.39454 3.65953 3.91837 4.36884 4.41762 4.52486 4.70248 4.72151 4.84787 4.86855 4.98282 5.11166 5.27164 5.27351 5.32866 5.34564 5.36250 5.46759 5.58132 5.63877 5.77428 5.80350 5.88408 5.92538 6.01010 6.22037 6.26627 6.34142 6.42795 6.43043 6.72732 6.79681 6.90153 7.50728 7.60503 7.88264 7.99219 8.27036 8.61870 8.93209 9.52119 11.01757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.002543 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.450708 B =11009.538992 C =11536.989842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.083 4.083 5 C -0.065 4.065 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.131 4.131 9 C 0.547 3.453 10 O -0.549 6.549 11 N -0.716 5.716 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.083 4.083 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.397 0.603 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -22.436 -7.952 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.065 4.065 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.134 4.134 9 C 0.333 3.667 10 O -0.428 6.428 11 N -0.366 5.366 12 C -0.001 4.001 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.102 4.102 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.231 0.769 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.398 -21.954 -8.490 25.345 hybrid contribution 0.275 0.807 0.626 1.057 sum -9.122 -21.147 -7.864 24.337 Atomic orbital electron populations 1.21779 0.95848 1.01543 1.01964 1.21549 0.95939 0.96757 1.02013 1.21617 0.94143 0.96824 1.02714 1.20672 0.95790 0.92474 1.03073 1.20067 0.97153 0.96069 0.93206 1.20987 1.01149 0.94769 0.97695 1.21273 0.94875 0.93889 0.97885 1.20136 1.04107 0.94810 0.94353 1.18312 0.78198 0.85762 0.84383 1.90733 1.52937 1.67803 1.31342 1.46281 1.66144 1.16459 1.07708 1.21767 0.98166 0.78605 1.01583 1.19332 0.97730 0.96729 0.88755 1.21046 1.44649 0.97574 0.92720 0.92207 1.25005 0.95421 0.98419 0.95508 1.69955 1.48811 1.37226 0.97317 0.86498 0.78888 0.84483 0.77601 1.20555 1.21169 1.19722 1.21393 0.96692 0.94747 0.97377 1.20964 1.00904 0.94731 0.97753 0.92719 0.92836 0.92675 0.92033 0.91984 0.91644 0.91704 0.90873 0.90816 0.85659 0.84742 0.76853 0.92369 0.92383 0.95912 0.95895 0.92841 0.85311 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.77 5.20 -26.73 -0.14 -0.91 16 4 C -0.08 -0.58 5.34 -27.88 -0.15 -0.73 16 5 C -0.06 -0.62 5.14 -104.53 -0.54 -1.16 16 6 C -0.13 -1.33 9.68 -39.64 -0.38 -1.72 16 7 C -0.06 -0.79 9.60 -39.19 -0.38 -1.17 16 8 C -0.13 -1.91 5.87 -104.97 -0.62 -2.53 16 9 C 0.55 10.00 7.77 -12.33 -0.10 9.91 16 10 O -0.55 -11.87 16.35 5.32 0.09 -11.78 16 11 N -0.72 -13.09 5.51 -61.25 -0.34 -13.43 16 12 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 13 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.08 -1.01 9.54 -39.18 -0.37 -1.38 16 23 C -0.13 -1.28 9.68 -39.64 -0.38 -1.66 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.78 7.65 -52.49 -0.40 1.38 16 35 H 0.40 6.27 6.51 -40.82 -0.27 6.00 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 41 H 0.13 1.40 6.41 -52.49 -0.34 1.06 16 42 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -31.72 353.39 -9.51 -41.23 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.88 Total: 0.91 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.42 Total: -13.28 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.40 Total: -38.85 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.72 -9.51 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.458 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds