Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47227 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00152 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00453 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99809 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00490 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47219 * 90.00245 * 18 16 14 20 20 H 1.48500 * 109.47393 * 209.99972 * 18 16 14 21 21 H 1.48501 * 109.47162 * 330.00289 * 18 16 14 22 22 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 23 23 C 1.37958 * 119.84937 * 0.02562 * 22 8 7 24 24 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 25 25 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 27 27 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 28 28 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 29 29 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 30 30 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 31 31 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 32 32 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 33 33 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 35 35 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 36 36 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 37 37 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 38 38 H 1.09005 * 109.46987 * 299.99854 * 13 12 11 39 39 H 1.08998 * 109.47290 * 60.00029 * 13 12 11 40 40 H 0.96993 * 120.00086 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.07575 * 180.02562 * 22 8 7 42 42 H 1.08006 * 119.92205 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 6.8720 10.7856 2.6146 15 1 7.0517 11.2952 1.6795 16 6 7.1007 11.4354 3.8089 17 7 6.8814 10.8150 4.9476 18 14 7.7234 13.1965 3.8097 19 1 6.5684 14.1299 3.8089 20 1 8.5473 13.4298 5.0230 21 1 8.5495 13.4301 2.5980 22 6 4.7613 4.8129 1.2092 23 6 4.3019 3.5121 1.2016 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 4.1124 3.0041 -2.1319 34 1 4.9411 5.3199 -2.1420 35 1 5.5508 7.0453 2.0104 36 1 7.1610 8.9303 0.6574 37 1 5.4828 9.5237 0.6577 38 1 5.4098 9.3186 3.1273 39 1 7.0880 8.7252 3.1279 40 1 7.0420 11.2722 5.7878 41 1 4.9393 5.3185 2.1468 42 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612061068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = -69.066927 kcal Electronic energy + Delta-G solvation = -19736.362103 eV Core-core repulsion = 16678.893368 eV Total energy + Delta-G solvation = -3057.468735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25291 -39.65544 -36.70710 -36.55045 -34.90042 -33.39856 -32.09627 -31.43042 -29.57118 -26.95510 -25.43218 -23.66946 -23.23533 -22.64491 -21.87022 -21.20409 -19.02780 -18.50431 -17.18126 -16.56285 -16.52419 -16.37805 -16.28240 -15.70831 -15.51142 -15.04155 -14.81093 -14.64959 -14.35033 -14.26716 -13.72901 -13.61811 -13.40347 -13.24224 -12.95766 -12.60587 -12.55390 -12.27700 -12.25444 -11.99766 -11.84627 -11.71698 -11.61523 -11.47590 -11.34629 -10.97163 -10.62206 -10.16705 -9.96239 -9.65181 -8.25576 -6.36159 -0.16821 0.41019 1.41100 1.41677 1.53232 1.81813 2.18276 2.43329 2.85549 3.09000 3.63097 3.81342 3.85990 4.01108 4.13973 4.21002 4.37015 4.38715 4.42220 4.44629 4.48064 4.63002 4.74907 4.80616 4.86650 4.93877 4.97294 5.05897 5.09239 5.20735 5.21659 5.33786 5.34903 5.39547 5.40458 5.46490 5.54478 5.54824 5.64462 5.75991 5.94535 6.13661 6.54129 6.76459 7.16143 7.33008 8.86334 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034119 B = 0.002543 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.450708 B =11009.538992 C =11536.989842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.080 4.080 5 C -0.053 4.053 6 C -0.125 4.125 7 C -0.072 4.072 8 C -0.158 4.158 9 C 0.546 3.454 10 O -0.590 6.590 11 N -0.712 5.712 12 C 0.139 3.861 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.085 4.085 23 C -0.125 4.125 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.409 0.591 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 -24.160 -7.826 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.053 4.053 6 C -0.143 4.143 7 C -0.091 4.091 8 C -0.161 4.161 9 C 0.336 3.664 10 O -0.472 6.472 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.104 4.104 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.169 0.831 34 H 0.142 0.858 35 H 0.246 0.754 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.887 -23.706 -8.351 27.009 hybrid contribution 0.366 1.211 0.581 1.393 sum -9.521 -22.495 -7.770 25.633 Atomic orbital electron populations 1.21798 0.96025 1.01857 1.01689 1.21530 0.95777 0.96098 1.02598 1.21584 0.93835 0.97427 1.02214 1.20734 0.95817 0.90631 1.04483 1.20456 0.95062 0.97228 0.92592 1.21254 1.00073 0.93594 0.99359 1.21327 0.95692 0.95127 0.96972 1.19893 1.07118 0.92942 0.96147 1.18912 0.77049 0.87114 0.83354 1.90696 1.54803 1.69141 1.32601 1.46082 1.66214 1.15215 1.08749 1.21291 0.97544 0.80445 0.99151 1.19137 0.96358 0.95693 0.90250 1.21451 1.45144 0.99016 0.92993 0.92301 1.25889 0.95433 1.02864 0.95060 1.70055 1.49470 1.39041 0.97931 0.85420 0.78520 0.79082 0.77876 1.19726 1.20413 1.19122 1.21529 0.96549 0.95656 0.96675 1.21299 0.99778 0.93862 0.99291 0.92979 0.92263 0.93010 0.91416 0.91423 0.92199 0.92250 0.89532 0.89443 0.83104 0.85816 0.75386 0.93371 0.93374 0.97206 0.97177 0.92484 0.84537 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.88 16 3 C -0.11 -1.20 5.20 30.59 0.16 -1.04 16 4 C -0.08 -0.83 5.34 29.85 0.16 -0.67 16 5 C -0.05 -0.87 5.14 -19.80 -0.10 -0.97 16 6 C -0.13 -2.35 9.68 22.23 0.22 -2.13 16 7 C -0.07 -1.87 9.60 22.53 0.22 -1.66 16 8 C -0.16 -4.63 5.87 -20.09 -0.12 -4.75 16 9 C 0.55 20.61 7.77 86.79 0.67 21.29 16 10 O -0.59 -26.59 16.35 -3.87 -0.06 -26.65 16 11 N -0.71 -26.74 5.51 -465.97 -2.57 -29.31 16 12 C 0.14 6.26 5.61 86.38 0.48 6.74 16 13 C 0.02 1.19 5.09 29.85 0.15 1.34 16 14 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.36 5.46 84.65 0.46 0.82 16 17 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 18 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.09 -1.98 9.54 22.53 0.21 -1.76 16 23 C -0.12 -2.22 9.68 22.23 0.22 -2.00 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 33 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.12 3.39 7.65 -2.91 -0.02 3.37 16 35 H 0.41 13.14 6.51 -92.71 -0.60 12.54 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.14 2.83 6.41 -2.91 -0.02 2.81 16 42 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -68.76 353.39 3.93 -64.83 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.38 Total: 16.54 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.86 Total: -17.21 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.28 Total: -83.50 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.65 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -68.76 3.93 -64.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612061068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.239 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds