Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47410 * 2 1 4 4 C 1.53001 * 109.47375 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47010 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.47103 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.07999 * 119.99289 * 334.28466 * 16 15 10 18 18 C 1.39937 * 120.00394 * 154.28925 * 16 15 10 19 19 N 1.30829 * 120.00181 * 334.60180 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 154.60226 * 18 16 15 21 21 H 1.48505 * 109.47160 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47100 * 300.00105 * 20 18 16 23 23 H 1.48502 * 109.47051 * 60.00179 * 20 18 16 24 24 H 1.09003 * 109.46879 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46727 * 299.99884 * 1 2 3 26 26 H 1.08998 * 109.47132 * 60.00123 * 1 2 3 27 27 H 1.09003 * 109.47217 * 239.99987 * 2 1 3 28 28 H 1.09008 * 109.47384 * 120.00373 * 2 1 3 29 29 H 1.09001 * 109.47080 * 60.00332 * 3 2 1 30 30 H 1.08998 * 109.46872 * 300.00036 * 3 2 1 31 31 H 1.08992 * 109.47153 * 59.99702 * 4 3 2 32 32 H 1.09003 * 109.46640 * 300.00124 * 4 3 2 33 33 H 1.09001 * 109.47212 * 60.00084 * 5 4 3 34 34 H 1.08991 * 109.47261 * 299.99917 * 5 4 3 35 35 H 0.97000 * 119.99705 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 37 37 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 38 38 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 40 40 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 41 41 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 42 42 H 0.96998 * 119.99709 * 354.17607 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 7 5.5451 2.8849 -0.0013 7 6 6.2190 4.0521 -0.0013 8 8 5.6126 5.1024 -0.0018 9 6 7.7260 4.0520 -0.0019 10 6 8.2284 5.4729 -0.0024 11 6 8.5500 6.0915 -1.1892 12 6 9.0186 7.3960 -1.1919 13 6 9.1623 8.0947 -0.0029 14 6 8.8409 7.4984 1.1948 15 6 8.3642 6.1742 1.2096 16 6 8.0301 5.5514 2.4343 17 1 7.3111 4.7458 2.4518 18 6 8.6309 5.9790 3.6236 19 7 9.8034 6.5586 3.5926 20 14 7.7589 5.7221 5.2555 21 1 8.5996 6.2586 6.3558 22 1 6.4548 6.4320 5.2370 23 1 7.5295 4.2708 5.4711 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 3.7171 3.3990 0.8887 34 1 3.7164 3.3984 -0.8912 35 1 6.0301 2.0449 -0.0013 36 1 8.0889 3.5384 -0.8921 37 1 8.0896 3.5381 0.8878 38 1 8.4414 5.5569 -2.1212 39 1 9.2733 7.8720 -2.1273 40 1 9.5279 9.1108 -0.0168 41 1 8.9533 8.0445 2.1196 42 1 10.2938 6.6165 2.7578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776725978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -76.588370 kcal Electronic energy + Delta-G solvation = -20644.424730 eV Core-core repulsion = 17586.629840 eV Total energy + Delta-G solvation = -3057.794890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84548 -39.36313 -37.37039 -35.73893 -35.26994 -33.58340 -31.75339 -31.09949 -28.77957 -27.03107 -26.29619 -23.01265 -22.82301 -22.33718 -21.88282 -20.98063 -19.60703 -17.79084 -17.17698 -17.05229 -16.60667 -16.49820 -15.87479 -15.72041 -15.38625 -14.76528 -14.69355 -14.42082 -14.16700 -13.92010 -13.86238 -13.52579 -13.28043 -12.98723 -12.72901 -12.60596 -12.58924 -12.24727 -12.01287 -11.98265 -11.94671 -11.69466 -11.48213 -11.39716 -11.21738 -10.84931 -10.77915 -10.03214 -9.44571 -9.42840 -9.05641 -6.39663 0.91212 0.98738 1.46670 1.62068 1.76378 1.79830 2.31011 2.35963 2.72161 3.58940 3.81970 3.98735 4.05821 4.14171 4.28369 4.31371 4.35790 4.46088 4.51353 4.57480 4.61012 4.70393 4.72280 4.84612 4.93474 4.98899 5.03890 5.07768 5.10825 5.19079 5.30569 5.32881 5.43349 5.49924 5.50380 5.56050 5.80160 5.84237 5.98933 6.05170 6.29586 6.45473 6.67054 6.87012 7.02183 7.42357 8.08520 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.004266 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.245301 B = 6562.708307 C = 7911.654507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.118 4.118 4 C -0.117 4.117 5 C 0.118 3.882 6 N -0.724 5.724 7 C 0.513 3.487 8 O -0.579 6.579 9 C -0.069 4.069 10 C -0.191 4.191 11 C -0.081 4.081 12 C -0.251 4.251 13 C -0.097 4.097 14 C -0.246 4.246 15 C 0.084 3.916 16 C -0.542 4.542 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.820 5.820 20 Si 1.107 2.893 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.252 1.252 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.415 0.585 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 -14.785 -5.406 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.378 5.378 7 C 0.301 3.699 8 O -0.458 6.458 9 C -0.109 4.109 10 C -0.192 4.192 11 C -0.099 4.099 12 C -0.270 4.270 13 C -0.116 4.116 14 C -0.266 4.266 15 C 0.082 3.918 16 C -0.570 4.570 17 H 0.086 0.914 18 C -0.212 4.212 19 N -0.443 5.443 20 Si 0.925 3.075 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.176 1.176 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.186 -13.730 -3.791 18.111 hybrid contribution 0.255 0.035 -1.602 1.622 sum -10.932 -13.695 -5.392 18.334 Atomic orbital electron populations 1.21794 0.95674 1.01996 1.01781 1.21501 0.96066 0.95784 1.02513 1.21536 0.93915 0.97882 1.02255 1.21728 0.96531 0.93398 1.03804 1.21365 0.79557 0.98942 1.00697 1.45930 1.07426 1.08432 1.76014 1.21159 0.90948 0.83386 0.74410 1.90660 1.71258 1.33529 1.50347 1.20279 0.90249 0.95720 1.04651 1.19542 1.10502 0.95916 0.93260 1.20821 0.97552 0.95041 0.96529 1.20726 1.12696 0.96593 0.96992 1.20902 0.98932 0.98687 0.93035 1.21156 1.12362 0.96259 0.96790 1.17800 0.89272 0.91204 0.93566 1.20545 1.24030 1.19223 0.93229 0.91401 1.28234 0.94714 0.90684 1.07549 1.70553 1.10275 1.30965 1.32529 0.83133 0.75099 0.78858 0.70388 1.19315 1.20160 1.17584 0.92060 0.92997 0.92759 0.91341 0.91673 0.92307 0.91855 0.89812 0.90442 0.93906 0.92962 0.74845 0.86723 0.88631 0.86225 0.86262 0.87227 0.89860 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.51 5.93 30.59 0.18 -1.32 16 3 C -0.12 -1.80 5.21 30.59 0.16 -1.64 16 4 C -0.12 -1.90 5.33 30.59 0.16 -1.74 16 5 C 0.12 3.01 5.67 86.38 0.49 3.50 16 6 N -0.72 -20.25 5.56 -463.07 -2.57 -22.82 16 7 C 0.51 20.17 7.46 87.66 0.65 20.83 16 8 O -0.58 -29.12 16.03 -3.04 -0.05 -29.17 16 9 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 10 C -0.19 -9.26 4.43 -19.40 -0.09 -9.35 16 11 C -0.08 -3.67 9.66 22.22 0.21 -3.45 16 12 C -0.25 -11.40 10.05 22.46 0.23 -11.17 16 13 C -0.10 -4.78 10.02 22.22 0.22 -4.56 16 14 C -0.25 -13.68 7.95 22.73 0.18 -13.50 16 15 C 0.08 4.67 5.30 -21.29 -0.11 4.56 16 16 C -0.54 -29.85 8.08 23.46 0.19 -29.66 16 17 H 0.07 3.67 6.73 -2.91 -0.02 3.65 16 18 C 0.00 0.23 4.94 85.25 0.42 0.65 16 19 N -0.82 -45.54 12.31 21.82 0.27 -45.27 16 20 Si 1.11 45.28 30.00 68.60 2.06 47.34 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.41 8.34 8.47 -92.71 -0.79 7.56 16 36 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 37 H 0.10 3.68 7.06 -2.39 -0.02 3.66 16 38 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 40 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 41 H 0.08 4.85 6.49 -2.91 -0.02 4.83 16 42 H 0.28 16.38 6.68 -92.71 -0.62 15.76 16 Total: -1.00 -70.39 347.59 3.83 -66.56 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.36 Total: 33.91 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.77 Total: -50.54 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -2.30 Total: -68.09 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.06 Total: 47.34 kcal Total: -70.39 3.83 -66.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776725978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.028 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds