Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47135 * 175.00268 * 3 2 1 5 5 C 1.52999 * 109.47353 * 184.99907 * 4 3 2 6 6 N 1.46507 * 109.47338 * 295.00031 * 3 2 1 7 7 C 1.34773 * 120.00266 * 155.00338 * 6 3 2 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 3 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 3 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.08000 * 119.99352 * 334.30755 * 16 15 10 18 18 C 1.39945 * 120.00528 * 154.30834 * 16 15 10 19 19 N 1.30822 * 119.99665 * 334.60546 * 18 16 15 20 20 Si 1.86794 * 119.99881 * 154.60272 * 18 16 15 21 21 H 1.48507 * 109.46983 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47393 * 300.00016 * 20 18 16 23 23 H 1.48494 * 109.47084 * 60.00684 * 20 18 16 24 24 H 1.09001 * 109.47494 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47261 * 299.99865 * 1 2 3 26 26 H 1.09004 * 109.47510 * 59.99860 * 1 2 3 27 27 H 1.09000 * 109.47261 * 240.00135 * 2 1 3 28 28 H 1.08992 * 109.47109 * 120.00290 * 2 1 3 29 29 H 1.08994 * 109.47139 * 55.00140 * 3 2 1 30 30 H 1.08998 * 109.46921 * 304.99777 * 4 3 2 31 31 H 1.09000 * 109.47402 * 64.99625 * 4 3 2 32 32 H 1.08996 * 109.47550 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47195 * 300.00547 * 5 4 3 34 34 H 1.09006 * 109.46898 * 59.99922 * 5 4 3 35 35 H 0.97000 * 119.99705 * 335.00033 * 6 3 2 36 36 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 37 37 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 38 38 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 40 40 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 41 41 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 42 42 H 0.97006 * 120.00309 * 354.17797 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8850 0.2510 6 7 1.6523 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2996 8 8 1.7319 4.1028 -0.3062 9 6 1.1263 4.1121 -2.5871 10 6 1.0557 5.6023 -2.3735 11 6 -0.1454 6.1998 -2.0654 12 6 -0.2145 7.5711 -1.8749 13 6 0.9238 8.3551 -1.9853 14 6 2.1363 7.7784 -2.2863 15 6 2.2183 6.3871 -2.4818 16 6 3.4590 5.7833 -2.7908 17 1 3.6303 4.7455 -2.5457 18 6 4.4649 6.5304 -3.4141 19 7 4.1506 7.5686 -4.1454 20 14 6.2562 6.0452 -3.2019 21 1 7.1178 6.9900 -3.9571 22 1 6.6145 6.0925 -1.7615 23 1 6.4604 4.6678 -3.7179 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 1.6053 1.9815 0.8418 30 1 3.8570 0.8800 1.0112 31 1 4.0029 0.9835 -0.7597 32 1 5.1507 2.8863 0.3410 33 1 3.7721 3.4493 -0.6345 34 1 3.6264 3.3457 1.1365 35 1 1.4870 1.5661 -2.0463 36 1 0.1500 3.7439 -2.9023 37 1 1.8645 3.8898 -3.3576 38 1 -1.0382 5.5987 -1.9764 39 1 -1.1619 8.0322 -1.6384 40 1 0.8585 9.4225 -1.8344 41 1 3.0217 8.3909 -2.3714 42 1 3.2191 7.7712 -4.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776735539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -49.987162 kcal Electronic energy + Delta-G solvation = -21925.179249 eV Core-core repulsion = 18868.537874 eV Total energy + Delta-G solvation = -3056.641375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58956 -37.72102 -36.11543 -33.80191 -32.29890 -31.95892 -31.29653 -29.15984 -27.07887 -25.91019 -24.76908 -21.89350 -21.27769 -20.88265 -20.24010 -19.46703 -17.67971 -16.41353 -16.08102 -15.30794 -14.84404 -14.29845 -14.20943 -13.96719 -13.77164 -13.67182 -13.18958 -12.94679 -12.64812 -12.30436 -12.18927 -11.98527 -11.69451 -11.52908 -11.21155 -11.17086 -11.01230 -10.98280 -10.79528 -10.57796 -10.48191 -10.42388 -10.34512 -9.59738 -9.32401 -9.06507 -8.90693 -8.54477 -7.50042 -7.45224 -7.07226 -4.36673 2.80912 2.90024 3.18024 3.31859 3.39488 3.40736 3.73151 4.05670 4.63936 4.68424 4.99309 5.02929 5.38655 5.42559 5.52073 5.54673 5.67399 5.76725 5.83439 5.86713 5.96234 6.03333 6.09047 6.16217 6.22502 6.24736 6.33181 6.38680 6.41383 6.52211 6.74079 6.90265 6.96623 7.05463 7.26703 7.47881 7.73438 7.88207 7.91737 7.99972 8.04710 8.26515 8.40295 8.84331 8.95070 8.98225 10.11991 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.006914 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.109939 B = 4048.918786 C = 5419.489233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.144 3.856 4 C -0.132 4.132 5 C -0.149 4.149 6 N -0.738 5.738 7 C 0.515 3.485 8 O -0.516 6.516 9 C -0.072 4.072 10 C -0.182 4.182 11 C -0.070 4.070 12 C -0.253 4.253 13 C -0.087 4.087 14 C -0.216 4.216 15 C 0.117 3.883 16 C -0.515 4.515 17 H 0.073 0.927 18 C 0.041 3.959 19 N -0.800 5.800 20 Si 1.057 2.943 21 H -0.274 1.274 22 H -0.274 1.274 23 H -0.277 1.277 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.393 0.607 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -13.252 3.261 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.039 3.961 4 C -0.170 4.170 5 C -0.207 4.207 6 N -0.393 5.393 7 C 0.302 3.698 8 O -0.389 6.389 9 C -0.111 4.111 10 C -0.184 4.184 11 C -0.088 4.088 12 C -0.272 4.272 13 C -0.105 4.105 14 C -0.235 4.235 15 C 0.114 3.886 16 C -0.543 4.543 17 H 0.091 0.909 18 C -0.181 4.181 19 N -0.423 5.423 20 Si 0.881 3.119 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.202 1.202 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.866 -12.238 3.585 12.782 hybrid contribution -1.680 -0.701 0.086 1.822 sum -2.545 -12.940 3.671 13.689 Atomic orbital electron populations 1.21756 0.95500 1.01213 1.02390 1.21807 0.96390 0.96015 1.02562 1.20971 0.94326 0.92332 0.88445 1.21958 0.95409 0.98460 1.01209 1.21850 0.99214 0.95582 1.04015 1.46191 1.72847 1.07493 1.12724 1.21075 0.76142 0.81137 0.91437 1.90686 1.47803 1.63763 1.36674 1.20257 1.01381 0.94604 0.94901 1.19007 0.93377 0.92058 1.13912 1.20350 0.95667 0.94303 0.98492 1.20249 0.96998 0.93852 1.16147 1.20593 0.93577 0.97205 0.99163 1.21133 0.96453 0.95651 1.10308 1.17380 0.91712 0.91248 0.88252 1.20427 0.97975 0.99837 1.36077 0.90933 1.26886 1.06734 0.92707 0.91744 1.70447 1.25026 1.22966 1.23898 0.83758 0.73577 0.76771 0.77811 1.19913 1.19991 1.20218 0.92928 0.92708 0.92420 0.91630 0.90899 0.89821 0.92026 0.92268 0.94065 0.91036 0.92474 0.77384 0.90878 0.88853 0.89713 0.89556 0.89480 0.87822 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.80 37.15 0.36 -1.05 16 2 C -0.13 -1.24 5.47 -26.74 -0.15 -1.38 16 3 C 0.14 1.88 2.26 -67.93 -0.15 1.73 16 4 C -0.13 -1.76 5.61 -26.73 -0.15 -1.91 16 5 C -0.15 -2.58 8.52 37.16 0.32 -2.26 16 6 N -0.74 -10.54 4.48 -53.81 -0.24 -10.78 16 7 C 0.51 9.79 6.03 -10.99 -0.07 9.72 16 8 O -0.52 -11.93 13.17 5.56 0.07 -11.86 16 9 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 10 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 11 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 12 C -0.25 -5.90 10.05 -39.29 -0.39 -6.30 16 13 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 14 C -0.22 -5.73 7.95 -38.87 -0.31 -6.04 16 15 C 0.12 3.10 5.30 -106.82 -0.57 2.53 16 16 C -0.52 -13.49 8.08 -37.74 -0.30 -13.80 16 17 H 0.07 1.86 6.40 -52.49 -0.34 1.53 16 18 C 0.04 1.04 4.94 -17.34 -0.09 0.96 16 19 N -0.80 -21.31 12.31 55.55 0.68 -20.62 16 20 Si 1.06 22.14 30.00 -169.99 -5.10 17.04 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.47 5.32 -51.93 -0.28 1.20 16 34 H 0.06 1.05 7.85 -51.93 -0.41 0.64 16 35 H 0.39 4.50 8.60 -40.82 -0.35 4.15 16 36 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.09 1.82 7.06 -51.93 -0.37 1.45 16 38 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.10 2.83 6.49 -52.49 -0.34 2.49 16 42 H 0.30 8.16 6.68 -40.82 -0.27 7.89 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -29.82 337.54 -8.97 -38.79 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.59 Total: 11.01 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -2.89 Total: -28.67 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.44 Total: -31.40 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.82 -8.97 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.194 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds