Wall clock time and date at job start Mon Mar 30 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47135 * 175.00268 * 3 2 1 5 5 C 1.52999 * 109.47353 * 184.99907 * 4 3 2 6 6 N 1.46507 * 109.47338 * 295.00031 * 3 2 1 7 7 C 1.34773 * 120.00266 * 155.00338 * 6 3 2 8 8 O 1.21282 * 119.99503 * 359.97438 * 7 6 3 9 9 C 1.50694 * 120.00092 * 180.02562 * 7 6 3 10 10 C 1.50707 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37643 * 120.12639 * 265.30991 * 10 9 7 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 84.99750 * 10 9 7 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.08000 * 119.99352 * 334.30755 * 16 15 10 18 18 C 1.39945 * 120.00528 * 154.30834 * 16 15 10 19 19 N 1.30822 * 119.99665 * 334.60546 * 18 16 15 20 20 Si 1.86794 * 119.99881 * 154.60272 * 18 16 15 21 21 H 1.48507 * 109.46983 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47393 * 300.00016 * 20 18 16 23 23 H 1.48494 * 109.47084 * 60.00684 * 20 18 16 24 24 H 1.09001 * 109.47494 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47261 * 299.99865 * 1 2 3 26 26 H 1.09004 * 109.47510 * 59.99860 * 1 2 3 27 27 H 1.09000 * 109.47261 * 240.00135 * 2 1 3 28 28 H 1.08992 * 109.47109 * 120.00290 * 2 1 3 29 29 H 1.08994 * 109.47139 * 55.00140 * 3 2 1 30 30 H 1.08998 * 109.46921 * 304.99777 * 4 3 2 31 31 H 1.09000 * 109.47402 * 64.99625 * 4 3 2 32 32 H 1.08996 * 109.47550 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47195 * 300.00547 * 5 4 3 34 34 H 1.09006 * 109.46898 * 59.99922 * 5 4 3 35 35 H 0.97000 * 119.99705 * 335.00033 * 6 3 2 36 36 H 1.09001 * 109.46892 * 59.99768 * 9 7 6 37 37 H 1.08991 * 109.47294 * 299.99778 * 9 7 6 38 38 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 40 40 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 41 41 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 42 42 H 0.97006 * 120.00309 * 354.17797 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8850 0.2510 6 7 1.6523 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2996 8 8 1.7319 4.1028 -0.3062 9 6 1.1263 4.1121 -2.5871 10 6 1.0557 5.6023 -2.3735 11 6 -0.1454 6.1998 -2.0654 12 6 -0.2145 7.5711 -1.8749 13 6 0.9238 8.3551 -1.9853 14 6 2.1363 7.7784 -2.2863 15 6 2.2183 6.3871 -2.4818 16 6 3.4590 5.7833 -2.7908 17 1 3.6303 4.7455 -2.5457 18 6 4.4649 6.5304 -3.4141 19 7 4.1506 7.5686 -4.1454 20 14 6.2562 6.0452 -3.2019 21 1 7.1178 6.9900 -3.9571 22 1 6.6145 6.0925 -1.7615 23 1 6.4604 4.6678 -3.7179 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8899 29 1 1.6053 1.9815 0.8418 30 1 3.8570 0.8800 1.0112 31 1 4.0029 0.9835 -0.7597 32 1 5.1507 2.8863 0.3410 33 1 3.7721 3.4493 -0.6345 34 1 3.6264 3.3457 1.1365 35 1 1.4870 1.5661 -2.0463 36 1 0.1500 3.7439 -2.9023 37 1 1.8645 3.8898 -3.3576 38 1 -1.0382 5.5987 -1.9764 39 1 -1.1619 8.0322 -1.6384 40 1 0.8585 9.4225 -1.8344 41 1 3.0217 8.3909 -2.3714 42 1 3.2191 7.7712 -4.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776735539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:35 Heat of formation + Delta-G solvation = -66.381924 kcal Electronic energy + Delta-G solvation = -21925.890179 eV Core-core repulsion = 18868.537874 eV Total energy + Delta-G solvation = -3057.352305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03500 -39.48052 -37.40626 -35.72276 -33.82892 -32.93090 -32.83877 -31.08350 -28.66621 -27.25396 -26.56047 -22.91679 -22.81495 -22.67303 -21.50629 -21.10003 -19.58084 -17.81896 -17.32488 -16.92982 -16.58669 -15.97233 -15.80445 -15.49147 -14.90880 -14.79768 -14.70241 -14.25389 -14.15801 -13.86043 -13.81194 -13.49162 -13.27149 -12.97113 -12.73231 -12.59747 -12.44884 -12.25810 -12.19974 -12.00218 -11.85972 -11.70533 -11.56522 -11.46081 -11.18790 -10.82383 -10.61913 -9.82717 -9.42717 -9.40452 -9.03570 -6.36724 0.93482 0.99979 1.45625 1.61338 1.74590 1.92466 2.30691 2.45335 2.73874 3.61818 3.74642 4.07326 4.13088 4.17480 4.31256 4.37032 4.40957 4.50601 4.54573 4.58537 4.60107 4.73427 4.76620 4.95355 4.98995 5.05008 5.06303 5.09430 5.13174 5.17013 5.29546 5.34266 5.43590 5.48781 5.55898 5.76581 5.82027 5.87685 6.01308 6.07037 6.31681 6.47370 6.77430 6.89713 7.04647 7.55883 8.10162 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.006914 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.109939 B = 4048.918786 C = 5419.489233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.142 3.858 4 C -0.126 4.126 5 C -0.147 4.147 6 N -0.718 5.718 7 C 0.517 3.483 8 O -0.564 6.564 9 C -0.072 4.072 10 C -0.186 4.186 11 C -0.082 4.082 12 C -0.251 4.251 13 C -0.098 4.098 14 C -0.246 4.246 15 C 0.087 3.913 16 C -0.535 4.535 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.821 5.821 20 Si 1.102 2.898 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.251 1.251 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.410 0.590 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 -16.218 3.390 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.038 3.962 4 C -0.164 4.164 5 C -0.204 4.204 6 N -0.372 5.372 7 C 0.305 3.695 8 O -0.442 6.442 9 C -0.111 4.111 10 C -0.187 4.187 11 C -0.100 4.100 12 C -0.270 4.270 13 C -0.116 4.116 14 C -0.265 4.265 15 C 0.085 3.915 16 C -0.564 4.564 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.445 5.445 20 Si 0.920 3.080 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.175 1.175 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.246 0.754 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.516 -15.259 3.687 15.771 hybrid contribution -1.638 0.220 0.107 1.656 sum -3.154 -15.039 3.794 15.828 Atomic orbital electron populations 1.21763 0.95401 1.02235 1.01502 1.21760 0.96350 0.93179 1.04378 1.21099 0.94262 0.94195 0.86660 1.21944 0.95360 0.95947 1.03153 1.21783 0.99681 0.97777 1.01178 1.45977 1.71046 1.06038 1.14120 1.20878 0.75790 0.82478 0.90359 1.90676 1.50263 1.65174 1.38104 1.20280 1.03354 0.92201 0.95313 1.19507 0.92880 0.94405 1.11927 1.20792 0.96603 0.94789 0.97842 1.20688 0.97748 0.94193 1.14407 1.20876 0.93286 0.98587 0.98890 1.21140 0.96757 0.96058 1.12578 1.17760 0.93034 0.91708 0.89043 1.20520 0.98766 0.99957 1.37118 0.91170 1.28148 1.10229 0.92077 0.90646 1.70548 1.23855 1.24341 1.25756 0.83206 0.69240 0.77854 0.77707 1.19479 1.20090 1.17517 0.90950 0.93949 0.93022 0.89693 0.89130 0.92453 0.89356 0.90816 0.93258 0.94644 0.94666 0.75363 0.87350 0.89068 0.86493 0.86517 0.87466 0.90007 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.80 71.98 0.71 -1.67 16 2 C -0.12 -1.82 5.47 30.59 0.17 -1.65 16 3 C 0.14 3.43 2.26 44.99 0.10 3.53 16 4 C -0.13 -3.07 5.61 30.60 0.17 -2.90 16 5 C -0.15 -5.07 8.52 71.98 0.61 -4.46 16 6 N -0.72 -19.19 4.48 -442.54 -1.98 -21.17 16 7 C 0.52 19.42 6.03 87.66 0.53 19.95 16 8 O -0.56 -26.64 13.17 -3.04 -0.04 -26.68 16 9 C -0.07 -2.74 5.18 29.10 0.15 -2.59 16 10 C -0.19 -8.91 4.43 -19.40 -0.09 -8.99 16 11 C -0.08 -3.69 9.66 22.22 0.21 -3.48 16 12 C -0.25 -11.42 10.05 22.46 0.23 -11.20 16 13 C -0.10 -4.82 10.02 22.22 0.22 -4.60 16 14 C -0.25 -13.59 7.95 22.73 0.18 -13.41 16 15 C 0.09 4.77 5.30 -21.29 -0.11 4.66 16 16 C -0.54 -29.02 8.08 23.46 0.19 -28.83 16 17 H 0.07 3.73 6.40 -2.91 -0.02 3.71 16 18 C 0.01 0.27 4.94 85.26 0.42 0.69 16 19 N -0.82 -45.57 12.31 21.83 0.27 -45.30 16 20 Si 1.10 45.30 30.00 68.60 2.06 47.35 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.47 5.32 -2.39 -0.01 1.46 16 34 H 0.03 1.32 7.85 -2.38 -0.02 1.30 16 35 H 0.41 8.20 8.60 -92.71 -0.80 7.40 16 36 H 0.11 3.29 8.05 -2.39 -0.02 3.27 16 37 H 0.09 3.52 7.06 -2.39 -0.02 3.50 16 38 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 41 H 0.08 4.76 6.49 -2.91 -0.02 4.74 16 42 H 0.28 16.35 6.68 -92.70 -0.62 15.74 16 Total: -1.00 -68.49 337.54 4.35 -64.13 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.36 Total: 36.62 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 3.69 Total: -54.96 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -1.71 Total: -66.47 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.04 Total: -26.68 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.06 Total: 47.35 kcal Total: -68.49 4.35 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776735539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.247 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds