Wall clock time and date at job start Mon Mar 30 2020 01:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38165 * 120.02356 * 2 1 4 4 C 1.38246 * 120.05172 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.11597 * 359.76629 * 4 3 2 6 6 C 1.38127 * 120.04903 * 0.50526 * 5 4 3 7 7 C 1.50699 * 120.02641 * 179.74113 * 6 5 4 8 8 N 1.46895 * 109.47625 * 259.73199 * 7 6 5 9 9 C 1.46845 * 110.99968 * 170.00095 * 8 7 6 10 10 C 1.53046 * 109.51230 * 174.15590 * 9 8 7 11 11 C 1.53119 * 109.27661 * 59.18447 * 10 9 8 12 12 C 1.50708 * 109.51893 * 182.37872 * 11 10 9 13 13 H 1.07997 * 119.99576 * 5.42583 * 12 11 10 14 14 C 1.37875 * 119.99825 * 185.43110 * 12 11 10 15 15 N 1.31518 * 120.00040 * 9.55150 * 14 12 11 16 16 Si 1.86796 * 120.00108 * 189.55153 * 14 12 11 17 17 H 1.48500 * 109.47043 * 94.98568 * 16 14 12 18 18 H 1.48492 * 109.47627 * 214.98907 * 16 14 12 19 19 H 1.48504 * 109.47097 * 334.99072 * 16 14 12 20 20 C 1.53115 * 109.16203 * 302.34179 * 11 10 9 21 21 C 1.46846 * 110.99270 * 45.79635 * 8 7 6 22 22 C 1.38706 * 120.03088 * 180.02562 * 2 1 3 23 23 O 1.35912 * 120.05394 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47502 * 269.97796 * 1 2 3 25 25 H 1.08998 * 109.47775 * 29.97591 * 1 2 3 26 26 H 1.09002 * 109.47250 * 149.98124 * 1 2 3 27 27 H 1.07999 * 119.97677 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94772 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.97661 * 180.25973 * 5 4 3 30 30 H 1.09008 * 109.46550 * 139.72914 * 7 6 5 31 31 H 1.09004 * 109.46931 * 19.73488 * 7 6 5 32 32 H 1.08998 * 109.46637 * 54.14537 * 9 8 7 33 33 H 1.08997 * 109.46179 * 294.16383 * 9 8 7 34 34 H 1.09006 * 109.49984 * 179.12648 * 10 9 8 35 35 H 1.09003 * 109.50132 * 299.20355 * 10 9 8 36 36 H 1.08998 * 109.52176 * 62.24985 * 11 10 9 37 37 H 0.96998 * 119.99776 * 180.02562 * 15 14 12 38 38 H 1.08993 * 109.50725 * 177.59470 * 20 11 10 39 39 H 1.09003 * 109.50640 * 297.67962 * 20 11 10 40 40 H 1.08999 * 109.47266 * 65.83148 * 21 8 7 41 41 H 1.09001 * 109.45420 * 305.85895 * 21 8 7 42 42 H 0.96701 * 113.99299 * 269.97575 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1969 -0.0005 5 6 4.2752 0.0010 0.0038 6 6 3.5886 -1.1975 -0.0019 7 6 4.3460 -2.5004 -0.0030 8 7 4.3832 -3.0440 -1.3671 9 6 5.3067 -4.1823 -1.4550 10 6 5.2110 -4.8121 -2.8466 11 6 5.5647 -3.7612 -3.9025 12 6 5.4155 -4.3591 -5.2778 13 1 5.0168 -5.3562 -5.3927 14 6 5.7883 -3.6333 -6.3892 15 7 6.4443 -2.5024 -6.2464 16 14 5.3615 -4.2561 -8.0977 17 1 4.0941 -3.6289 -8.5509 18 1 6.4532 -3.9031 -9.0404 19 1 5.1978 -5.7316 -8.0602 20 6 4.6193 -2.5654 -3.7578 21 6 4.7322 -2.0008 -2.3399 22 6 2.2011 -1.2009 -0.0005 23 8 1.5233 -2.3789 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6583 2.1316 0.0004 28 1 4.1194 2.1330 -0.0001 29 1 5.3551 0.0042 0.0076 30 1 3.8483 -3.2104 0.6577 31 1 5.3637 -2.3293 0.3479 32 1 5.0416 -4.9241 -0.7016 33 1 6.3260 -3.8372 -1.2819 34 1 5.9078 -5.6474 -2.9167 35 1 4.1953 -5.1704 -3.0147 36 1 6.5936 -3.4317 -3.7580 37 1 6.7062 -1.9916 -7.0283 38 1 4.8934 -1.7955 -4.4789 39 1 3.5943 -2.8875 -3.9413 40 1 5.7543 -1.6660 -2.1626 41 1 4.0498 -1.1581 -2.2291 42 1 1.3279 -2.7201 0.8829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781927901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:31 Heat of formation + Delta-G solvation = -28.174638 kcal Electronic energy + Delta-G solvation = -21720.211822 eV Core-core repulsion = 18664.516310 eV Total energy + Delta-G solvation = -3055.695513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15092 -37.96546 -36.49784 -34.32930 -32.68296 -31.34529 -29.88597 -29.63025 -26.84528 -26.48579 -24.36085 -22.25953 -21.88840 -21.37636 -20.28696 -18.54329 -18.11070 -16.34563 -15.99391 -15.83695 -15.20360 -14.93467 -14.38488 -14.13233 -13.76170 -13.51718 -13.23909 -12.93484 -12.81643 -12.45604 -12.34748 -12.21035 -11.86321 -11.75454 -11.67617 -11.21379 -11.10055 -10.95443 -10.71457 -10.42552 -10.22680 -10.14676 -9.97403 -9.35503 -8.85744 -8.70072 -8.54775 -8.44226 -8.22454 -7.61713 -5.93797 -3.94077 1.32039 1.32843 3.36209 3.43119 3.46472 3.62506 4.31084 4.51598 4.61677 4.77728 4.83184 4.99490 5.25114 5.38435 5.40941 5.51439 5.54593 5.58522 5.71853 5.78635 5.84260 5.95636 6.02350 6.14634 6.18499 6.27618 6.37872 6.47335 6.48694 6.61832 6.67306 6.71128 6.87731 6.90716 7.13927 7.22485 7.46508 7.68215 7.75304 7.81806 7.90493 8.10598 8.13188 8.55465 9.09808 9.68593 11.15549 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.004573 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.013344 B = 6121.318906 C = 6396.120147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.126 4.126 5 C -0.105 4.105 6 C -0.095 4.095 7 C 0.100 3.900 8 N -0.521 5.521 9 C 0.060 3.940 10 C -0.105 4.105 11 C 0.046 3.954 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.098 4.098 21 C 0.059 3.941 22 C 0.125 3.875 23 O -0.479 6.479 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.258 0.742 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 5.971 16.574 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.117 4.117 3 C -0.130 4.130 4 C -0.144 4.144 5 C -0.123 4.123 6 C -0.096 4.096 7 C -0.028 4.028 8 N -0.245 5.245 9 C -0.067 4.067 10 C -0.143 4.143 11 C 0.028 3.972 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.713 3.287 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.069 4.069 22 C 0.080 3.920 23 O -0.287 6.287 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.105 5.975 15.730 18.677 hybrid contribution 0.653 0.095 -0.348 0.746 sum -7.452 6.069 15.382 18.138 Atomic orbital electron populations 1.20657 0.90891 1.03249 1.01848 1.20209 0.96600 0.92654 1.02255 1.20884 0.94159 0.97011 1.00944 1.21071 0.94207 0.97929 1.01235 1.20994 0.99878 0.91635 0.99840 1.20159 0.93308 0.95496 1.00668 1.20895 0.96893 0.92352 0.92636 1.62111 1.51386 1.08712 1.02340 1.22142 0.92796 0.92462 0.99338 1.21664 1.00818 0.98849 0.92942 1.18697 0.94978 0.90960 0.92589 1.21194 1.41710 1.01057 0.90953 0.92749 1.24956 0.94701 0.95261 0.98903 1.69975 1.38060 1.15333 1.29579 0.86690 0.78082 0.79162 0.84742 1.20757 1.21439 1.19923 1.21572 0.99897 1.00317 0.91807 1.22265 0.97118 0.93142 0.94328 1.18044 0.89015 0.84932 1.00037 1.84935 1.75961 1.35705 1.32143 0.91700 0.91708 0.90747 0.86039 0.86000 0.86010 0.90687 0.94888 0.92470 0.95892 0.93127 0.92510 0.95516 0.93201 0.90966 0.93649 0.96258 0.92313 0.76535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.79 36.00 0.35 -0.75 16 2 C -0.12 -1.45 5.89 -104.48 -0.62 -2.07 16 3 C -0.11 -1.30 9.70 -39.61 -0.38 -1.68 16 4 C -0.13 -1.51 10.04 -39.56 -0.40 -1.90 16 5 C -0.10 -1.40 8.66 -39.60 -0.34 -1.75 16 6 C -0.10 -1.38 3.68 -104.47 -0.38 -1.76 16 7 C 0.10 1.50 5.07 -4.98 -0.03 1.48 16 8 N -0.52 -9.74 4.80 -236.11 -1.13 -10.88 16 9 C 0.06 1.13 5.42 -3.83 -0.02 1.11 16 10 C -0.10 -2.29 5.32 -26.65 -0.14 -2.44 16 11 C 0.05 1.20 2.03 -91.65 -0.19 1.01 16 12 C -0.51 -14.50 8.48 -34.44 -0.29 -14.79 16 13 H 0.05 1.53 7.77 -52.49 -0.41 1.12 16 14 C 0.06 1.79 5.23 -17.82 -0.09 1.70 16 15 N -0.89 -26.28 12.20 55.43 0.68 -25.60 16 16 Si 0.89 21.88 29.55 -169.99 -5.02 16.85 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.10 -2.41 5.19 -26.65 -0.14 -2.55 16 21 C 0.06 1.23 4.81 -3.83 -0.02 1.21 16 22 C 0.13 1.74 6.65 -39.22 -0.26 1.48 16 23 O -0.48 -6.36 11.79 -19.46 -0.23 -6.59 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.53 8.03 -52.49 -0.42 1.10 16 30 H 0.07 1.02 7.86 -51.92 -0.41 0.61 16 31 H 0.03 0.48 7.94 -51.93 -0.41 0.07 16 32 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.96 7.00 -51.93 -0.36 1.60 16 39 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.21 6.04 -51.93 -0.31 0.89 16 42 H 0.38 3.12 9.06 45.56 0.41 3.53 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -31.59 334.43 -9.70 -41.29 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.08 Total: 1.59 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.95 Total: -21.70 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.46 Total: -36.48 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.23 Total: -6.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.59 -9.70 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781927901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.113 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds