Wall clock time and date at job start Mon Mar 30 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38165 * 120.02356 * 2 1 4 4 C 1.38246 * 120.05172 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.11597 * 359.76629 * 4 3 2 6 6 C 1.38127 * 120.04903 * 0.50526 * 5 4 3 7 7 C 1.50699 * 120.02641 * 179.74113 * 6 5 4 8 8 N 1.46895 * 109.47625 * 259.73199 * 7 6 5 9 9 C 1.46845 * 110.99968 * 170.00095 * 8 7 6 10 10 C 1.53046 * 109.51230 * 174.15590 * 9 8 7 11 11 C 1.53119 * 109.27661 * 59.18447 * 10 9 8 12 12 C 1.50708 * 109.51893 * 182.37872 * 11 10 9 13 13 H 1.07997 * 119.99576 * 5.42583 * 12 11 10 14 14 C 1.37875 * 119.99825 * 185.43110 * 12 11 10 15 15 N 1.31518 * 120.00040 * 9.55150 * 14 12 11 16 16 Si 1.86796 * 120.00108 * 189.55153 * 14 12 11 17 17 H 1.48500 * 109.47043 * 94.98568 * 16 14 12 18 18 H 1.48492 * 109.47627 * 214.98907 * 16 14 12 19 19 H 1.48504 * 109.47097 * 334.99072 * 16 14 12 20 20 C 1.53115 * 109.16203 * 302.34179 * 11 10 9 21 21 C 1.46846 * 110.99270 * 45.79635 * 8 7 6 22 22 C 1.38706 * 120.03088 * 180.02562 * 2 1 3 23 23 O 1.35912 * 120.05394 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47502 * 269.97796 * 1 2 3 25 25 H 1.08998 * 109.47775 * 29.97591 * 1 2 3 26 26 H 1.09002 * 109.47250 * 149.98124 * 1 2 3 27 27 H 1.07999 * 119.97677 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.94772 * 180.02562 * 4 3 2 29 29 H 1.07995 * 119.97661 * 180.25973 * 5 4 3 30 30 H 1.09008 * 109.46550 * 139.72914 * 7 6 5 31 31 H 1.09004 * 109.46931 * 19.73488 * 7 6 5 32 32 H 1.08998 * 109.46637 * 54.14537 * 9 8 7 33 33 H 1.08997 * 109.46179 * 294.16383 * 9 8 7 34 34 H 1.09006 * 109.49984 * 179.12648 * 10 9 8 35 35 H 1.09003 * 109.50132 * 299.20355 * 10 9 8 36 36 H 1.08998 * 109.52176 * 62.24985 * 11 10 9 37 37 H 0.96998 * 119.99776 * 180.02562 * 15 14 12 38 38 H 1.08993 * 109.50725 * 177.59470 * 20 11 10 39 39 H 1.09003 * 109.50640 * 297.67962 * 20 11 10 40 40 H 1.08999 * 109.47266 * 65.83148 * 21 8 7 41 41 H 1.09001 * 109.45420 * 305.85895 * 21 8 7 42 42 H 0.96701 * 113.99299 * 269.97575 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1969 -0.0005 5 6 4.2752 0.0010 0.0038 6 6 3.5886 -1.1975 -0.0019 7 6 4.3460 -2.5004 -0.0030 8 7 4.3832 -3.0440 -1.3671 9 6 5.3067 -4.1823 -1.4550 10 6 5.2110 -4.8121 -2.8466 11 6 5.5647 -3.7612 -3.9025 12 6 5.4155 -4.3591 -5.2778 13 1 5.0168 -5.3562 -5.3927 14 6 5.7883 -3.6333 -6.3892 15 7 6.4443 -2.5024 -6.2464 16 14 5.3615 -4.2561 -8.0977 17 1 4.0941 -3.6289 -8.5509 18 1 6.4532 -3.9031 -9.0404 19 1 5.1978 -5.7316 -8.0602 20 6 4.6193 -2.5654 -3.7578 21 6 4.7322 -2.0008 -2.3399 22 6 2.2011 -1.2009 -0.0005 23 8 1.5233 -2.3789 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6583 2.1316 0.0004 28 1 4.1194 2.1330 -0.0001 29 1 5.3551 0.0042 0.0076 30 1 3.8483 -3.2104 0.6577 31 1 5.3637 -2.3293 0.3479 32 1 5.0416 -4.9241 -0.7016 33 1 6.3260 -3.8372 -1.2819 34 1 5.9078 -5.6474 -2.9167 35 1 4.1953 -5.1704 -3.0147 36 1 6.5936 -3.4317 -3.7580 37 1 6.7062 -1.9916 -7.0283 38 1 4.8934 -1.7955 -4.4789 39 1 3.5943 -2.8875 -3.9413 40 1 5.7543 -1.6660 -2.1626 41 1 4.0498 -1.1581 -2.2291 42 1 1.3279 -2.7201 0.8829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781927901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:30 Heat of formation + Delta-G solvation = -48.485277 kcal Electronic energy + Delta-G solvation = -21721.092558 eV Core-core repulsion = 18664.516310 eV Total energy + Delta-G solvation = -3056.576248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18668 -39.51687 -37.45413 -35.99623 -34.15725 -32.83482 -31.53305 -30.98434 -28.16062 -27.67482 -26.01887 -23.85868 -23.42339 -22.58798 -21.43984 -20.35632 -19.09283 -18.45725 -17.14246 -16.94899 -16.62977 -16.24584 -16.07834 -15.42834 -15.09474 -14.79120 -14.66541 -14.25559 -14.24016 -14.06761 -13.56810 -13.47410 -13.18494 -12.98259 -12.93608 -12.79296 -12.59841 -12.53273 -12.25929 -12.13485 -12.02149 -11.91014 -11.36355 -11.18592 -10.74911 -10.67728 -10.42150 -9.60492 -9.38617 -9.08968 -8.12903 -6.20973 0.35520 0.38687 1.38934 1.40868 1.50853 2.43254 2.65541 3.16851 3.20829 3.42768 3.75598 3.90733 4.09576 4.21617 4.26300 4.30664 4.41184 4.45773 4.51925 4.58164 4.67542 4.77068 4.82609 4.82912 4.85639 4.93718 4.97661 5.05784 5.10748 5.21572 5.29702 5.32456 5.49459 5.53570 5.53892 5.61696 5.64821 5.93867 5.97833 5.99971 6.26445 6.33432 6.39606 6.90775 7.00080 7.45405 8.95883 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.004573 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.013344 B = 6121.318906 C = 6396.120147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.103 3.897 8 N -0.529 5.529 9 C 0.066 3.934 10 C -0.098 4.098 11 C 0.044 3.956 12 C -0.534 4.534 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.087 4.087 21 C 0.078 3.922 22 C 0.113 3.887 23 O -0.495 6.495 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.148 0.852 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.022 0.978 34 H 0.055 0.945 35 H 0.050 0.950 36 H -0.007 1.007 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.011 0.989 41 H 0.062 0.938 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 6.186 17.694 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.128 4.128 3 C -0.130 4.130 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.118 4.118 7 C -0.024 4.024 8 N -0.254 5.254 9 C -0.062 4.062 10 C -0.136 4.136 11 C 0.026 3.974 12 C -0.572 4.572 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.126 4.126 21 C -0.050 4.050 22 C 0.068 3.932 23 O -0.306 6.306 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.011 0.989 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.244 6.175 16.880 20.212 hybrid contribution 0.981 0.048 -0.657 1.182 sum -8.263 6.223 16.223 19.240 Atomic orbital electron populations 1.20670 0.89282 1.03153 1.03143 1.20542 0.97948 0.92491 1.01826 1.21249 0.94233 0.97867 0.99640 1.21377 0.94689 0.98333 1.00483 1.21156 1.00193 0.92077 1.00249 1.20195 0.93736 0.95412 1.02497 1.20941 0.97775 0.93325 0.90355 1.62035 1.51129 1.08167 1.04040 1.22079 0.92993 0.93125 0.97964 1.21531 1.00301 0.97952 0.93846 1.18652 0.93246 0.92392 0.93145 1.21570 1.41846 1.01179 0.92615 0.93061 1.25739 0.94439 0.95479 1.02794 1.70096 1.38765 1.16425 1.30659 0.85667 0.77879 0.78937 0.79961 1.20329 1.20803 1.19071 1.21345 0.98353 0.99073 0.93828 1.21912 0.96740 0.93651 0.92653 1.18228 0.89041 0.85618 1.00334 1.84872 1.75878 1.35747 1.34150 0.89659 0.90607 0.91978 0.83441 0.83831 0.85851 0.88772 0.94149 0.89098 0.95999 0.92635 0.93161 0.98858 0.93099 0.94259 0.95159 0.97066 0.91951 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.79 71.23 0.70 -1.19 16 2 C -0.13 -2.94 5.89 -19.77 -0.12 -3.05 16 3 C -0.11 -2.33 9.70 22.25 0.22 -2.12 16 4 C -0.13 -2.88 10.04 22.28 0.22 -2.65 16 5 C -0.12 -3.03 8.66 22.26 0.19 -2.84 16 6 C -0.12 -3.25 3.68 -19.77 -0.07 -3.33 16 7 C 0.10 2.93 5.07 85.56 0.43 3.36 16 8 N -0.53 -19.30 4.80 -900.92 -4.32 -23.62 16 9 C 0.07 2.38 5.42 86.33 0.47 2.85 16 10 C -0.10 -4.30 5.32 30.65 0.16 -4.14 16 11 C 0.04 2.35 2.03 -11.46 -0.02 2.33 16 12 C -0.53 -30.98 8.48 25.60 0.22 -30.77 16 13 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 14 C 0.01 0.81 5.23 84.65 0.44 1.25 16 15 N -0.92 -55.67 12.20 21.45 0.26 -55.41 16 16 Si 0.95 45.34 29.55 68.60 2.03 47.36 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.09 -4.47 5.19 30.65 0.16 -4.31 16 21 C 0.08 3.30 4.81 86.33 0.42 3.72 16 22 C 0.11 2.99 6.65 22.50 0.15 3.14 16 23 O -0.49 -12.43 11.79 -92.56 -1.09 -13.52 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 26 H 0.06 1.26 7.53 -2.39 -0.02 1.24 16 27 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.12 3.01 8.03 -2.91 -0.02 2.99 16 30 H 0.09 2.31 7.86 -2.38 -0.02 2.29 16 31 H 0.04 1.10 7.94 -2.38 -0.02 1.08 16 32 H 0.09 2.71 8.12 -2.39 -0.02 2.69 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H -0.01 -0.40 8.09 -2.39 -0.02 -0.42 16 37 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.04 2.22 7.00 -2.39 -0.02 2.21 16 39 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 41 H 0.06 2.58 6.04 -2.39 -0.01 2.56 16 42 H 0.40 5.86 9.06 -74.06 -0.67 5.19 16 Total: -1.00 -68.87 334.43 0.76 -68.11 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.32 Total: 14.83 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.57 Total: -37.75 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.06 Total: -79.03 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.09 Total: -13.52 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.87 0.76 -68.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781927901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.625 kcal (2) G-P(sol) polarization free energy of solvation -68.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds