Wall clock time and date at job start Mon Mar 30 2020 02:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 C 1.53000 * 109.47074 * 119.99722 * 2 1 3 5 5 C 1.50700 * 109.47072 * 65.00152 * 4 2 1 6 6 C 1.37984 * 120.07366 * 267.48869 * 5 4 2 7 7 C 1.38337 * 120.14157 * 179.97438 * 6 5 4 8 8 C 1.38376 * 120.29250 * 0.03020 * 7 6 5 9 9 C 1.37935 * 120.14953 * 359.97146 * 8 7 6 10 10 C 1.39550 * 120.07213 * 87.21845 * 5 4 2 11 11 C 1.47845 * 120.14547 * 359.97438 * 10 5 4 12 12 O 1.21554 * 120.00379 * 306.13243 * 11 10 5 13 13 N 1.34779 * 119.99827 * 126.12667 * 11 10 5 14 14 C 1.46501 * 120.00020 * 4.96649 * 13 11 10 15 15 C 1.46501 * 119.99810 * 184.96198 * 13 11 10 16 16 C 1.50697 * 109.46965 * 90.00252 * 15 13 11 17 17 H 1.07999 * 120.00506 * 359.97438 * 16 15 13 18 18 C 1.37880 * 120.00038 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00080 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46759 * 120.00345 * 20 18 16 23 23 H 1.48500 * 109.46742 * 239.99793 * 20 18 16 24 24 H 1.08998 * 109.46562 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47136 * 299.99875 * 1 2 3 26 26 H 1.08994 * 109.46885 * 60.00242 * 1 2 3 27 27 H 1.08993 * 109.47136 * 240.00125 * 2 1 3 28 28 H 1.08994 * 109.47010 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46865 * 300.00021 * 3 2 1 30 30 H 1.09002 * 109.47332 * 59.99293 * 3 2 1 31 31 H 1.08996 * 109.47212 * 185.00449 * 4 2 1 32 32 H 1.09003 * 109.47044 * 304.99895 * 4 2 1 33 33 H 1.07995 * 119.92632 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.85053 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.92550 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.07141 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46896 * 84.86782 * 14 13 11 38 38 H 1.09005 * 109.46785 * 204.86464 * 14 13 11 39 39 H 1.08997 * 109.46951 * 324.86382 * 14 13 11 40 40 H 1.09002 * 109.46954 * 210.00550 * 15 13 11 41 41 H 1.09000 * 109.47250 * 330.00114 * 15 13 11 42 42 H 0.97001 * 120.00514 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1890 6 6 0.4625 -2.5914 1.7715 7 6 0.0949 -3.9239 1.7165 8 6 0.9058 -4.8459 1.0784 9 6 2.0869 -4.4411 0.4921 10 6 2.4609 -3.0970 0.5389 11 6 3.7222 -2.6549 -0.0931 12 8 3.7116 -1.7463 -0.9005 13 7 4.8839 -3.2592 0.2262 14 6 4.8837 -4.4236 1.1152 15 6 6.1467 -2.7517 -0.3160 16 6 6.7173 -1.7195 0.6221 17 1 6.1917 -1.4664 1.5310 18 6 7.9105 -1.0980 0.3200 19 7 8.5504 -1.4057 -0.7870 20 14 8.6181 0.1809 1.4832 21 1 7.7132 0.3442 2.6492 22 1 9.9550 -0.2632 1.9531 23 1 8.7492 1.4780 0.7721 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1263 -0.6442 1.2952 32 1 1.6054 -0.2616 2.1370 33 1 -0.1749 -1.8767 2.2707 34 1 -0.8286 -4.2461 2.1744 35 1 0.6133 -5.8849 1.0394 36 1 2.7186 -5.1617 -0.0060 37 1 4.6931 -5.3252 0.5330 38 1 5.8536 -4.5062 1.6059 39 1 4.1045 -4.3057 1.8682 40 1 6.8529 -3.5750 -0.4234 41 1 5.9673 -2.2974 -1.2904 42 1 9.3896 -0.9683 -0.9997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790490777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:22 Heat of formation + Delta-G solvation = -45.689727 kcal Electronic energy + Delta-G solvation = -21958.065363 eV Core-core repulsion = 18901.610339 eV Total energy + Delta-G solvation = -3056.455024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42367 -39.32233 -37.23784 -36.44687 -34.76914 -32.42315 -32.19173 -29.67658 -28.00210 -27.71887 -27.23574 -25.50356 -23.68728 -22.57605 -21.11804 -20.04509 -18.72666 -18.18188 -17.35484 -16.90351 -16.76086 -16.24332 -15.77369 -15.35337 -15.27861 -15.12664 -14.53767 -14.37594 -14.18456 -13.74700 -13.50901 -13.42057 -13.37549 -13.11211 -13.04202 -12.91594 -12.79205 -12.55856 -12.40540 -12.26506 -12.19896 -11.79169 -11.72095 -11.54323 -11.44318 -10.68229 -10.56141 -9.76896 -9.59775 -9.43428 -8.25692 -6.40731 0.16527 0.47616 1.32902 1.35130 1.47118 1.85498 2.30415 2.43177 2.87537 3.03574 3.65201 3.81940 3.91232 4.07605 4.13156 4.24679 4.33774 4.37422 4.48656 4.58971 4.61886 4.74442 4.77091 4.82786 4.85057 4.87775 4.94938 5.00379 5.01997 5.07028 5.16469 5.19143 5.33585 5.44776 5.48862 5.51512 5.56470 5.58330 5.70946 5.82476 6.02447 6.07004 6.65795 6.73006 7.24190 7.43090 8.81677 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.006230 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.926294 B = 4493.362733 C = 5524.535816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.074 4.074 5 C -0.049 4.049 6 C -0.119 4.119 7 C -0.094 4.094 8 C -0.123 4.123 9 C -0.096 4.096 10 C -0.141 4.141 11 C 0.542 3.458 12 O -0.578 6.578 13 N -0.606 5.606 14 C 0.083 3.917 15 C 0.260 3.740 16 C -0.541 4.541 17 H 0.049 0.951 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.280 1.280 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.025 0.975 41 H 0.000 1.000 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 -5.595 7.958 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.111 4.111 5 C -0.050 4.050 6 C -0.137 4.137 7 C -0.112 4.112 8 C -0.141 4.141 9 C -0.115 4.115 10 C -0.144 4.144 11 C 0.331 3.669 12 O -0.459 6.459 13 N -0.336 5.336 14 C -0.059 4.059 15 C 0.139 3.861 16 C -0.580 4.580 17 H 0.068 0.932 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.191 1.191 23 H -0.206 1.206 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.148 0.852 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.788 -5.114 7.441 20.845 hybrid contribution 1.409 0.777 -0.110 1.613 sum -17.379 -4.337 7.330 19.354 Atomic orbital electron populations 1.21815 0.93011 1.02071 1.02349 1.21058 0.97118 0.95632 0.97315 1.21756 0.99519 0.96103 1.02329 1.20621 0.99326 0.91816 0.99363 1.19967 0.94563 0.94505 0.95951 1.21238 0.94960 0.97484 1.00032 1.21696 1.00213 0.92231 0.97065 1.21414 0.93320 1.01553 0.97798 1.21435 0.98198 0.92987 0.98835 1.19861 0.95249 0.95995 1.03328 1.19006 0.84500 0.81678 0.81748 1.90681 1.87200 1.31667 1.36392 1.48112 1.06798 1.31011 1.47718 1.21936 1.03373 0.86914 0.93709 1.18784 0.80025 0.93709 0.93568 1.21669 1.06316 1.23094 1.06871 0.93223 1.25840 0.97053 0.98944 0.97104 1.70054 1.17112 1.44020 1.25498 0.85394 0.78510 0.78433 0.78671 1.19252 1.19148 1.20556 0.92388 0.90947 0.92616 0.93002 0.95773 0.92089 0.91003 0.95232 0.89047 0.83226 0.82028 0.82348 0.85175 0.90805 0.91302 0.90378 0.95737 0.98209 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.81 71.98 0.63 -2.55 16 2 C -0.09 -3.02 2.65 -10.79 -0.03 -3.04 16 3 C -0.14 -4.38 9.19 71.98 0.66 -3.72 16 4 C -0.07 -2.45 4.14 29.85 0.12 -2.32 16 5 C -0.05 -1.49 4.67 -19.61 -0.09 -1.58 16 6 C -0.12 -2.52 8.15 22.23 0.18 -2.34 16 7 C -0.09 -1.57 10.04 22.33 0.22 -1.34 16 8 C -0.12 -2.26 10.03 22.23 0.22 -2.04 16 9 C -0.10 -2.51 7.92 22.53 0.18 -2.33 16 10 C -0.14 -4.88 4.73 -20.09 -0.10 -4.98 16 11 C 0.54 24.79 6.13 86.79 0.53 25.32 16 12 O -0.58 -31.48 13.61 -3.88 -0.05 -31.53 16 13 N -0.61 -27.83 2.86 -854.56 -2.44 -30.27 16 14 C 0.08 2.79 9.15 127.77 1.17 3.96 16 15 C 0.26 14.69 5.18 85.63 0.44 15.13 16 16 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.01 0.57 5.46 84.66 0.46 1.03 16 19 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 20 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H 0.06 1.32 6.39 -2.39 -0.02 1.31 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 2.14 6.17 -2.39 -0.01 2.13 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.03 1.25 7.02 -2.39 -0.02 1.23 16 32 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.13 3.17 6.77 -2.91 -0.02 3.15 16 37 H 0.07 2.02 7.28 -2.39 -0.02 2.00 16 38 H 0.07 2.37 8.03 -2.38 -0.02 2.35 16 39 H 0.08 2.32 6.41 -2.39 -0.02 2.30 16 40 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 41 H 0.00 -0.01 7.36 -2.39 -0.02 -0.03 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.30 338.83 5.66 -70.64 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.99 Total: 12.93 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.86 Total: -12.81 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.16 Total: -87.16 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.05 Total: -31.53 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.30 5.66 -70.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790490777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.945 kcal (2) G-P(sol) polarization free energy of solvation -76.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds