Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47204 * 120.00230 * 2 1 3 5 5 C 1.50694 * 109.47120 * 64.99604 * 4 2 1 6 6 C 1.37980 * 120.07576 * 258.01417 * 5 4 2 7 7 C 1.38330 * 120.14825 * 180.02562 * 6 5 4 8 8 C 1.38384 * 120.29506 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.14230 * 0.02562 * 8 7 6 10 10 C 1.39559 * 120.07533 * 77.74342 * 5 4 2 11 11 C 1.47849 * 120.14314 * 359.97438 * 10 5 4 12 12 O 1.21554 * 119.99904 * 5.23050 * 11 10 5 13 13 N 1.34777 * 120.00047 * 185.23591 * 11 10 5 14 14 C 1.46501 * 119.99662 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46572 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46805 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00084 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00213 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99604 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47328 * 60.00312 * 20 18 16 22 22 H 1.48503 * 109.47279 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47191 * 299.99989 * 20 18 16 24 24 H 1.09001 * 109.47304 * 59.99984 * 1 2 3 25 25 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46968 * 300.00230 * 1 2 3 27 27 H 1.09000 * 109.47127 * 240.00039 * 2 1 3 28 28 H 1.09005 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47249 * 299.99727 * 3 2 1 30 30 H 1.08996 * 109.47391 * 60.00282 * 3 2 1 31 31 H 1.09004 * 109.47149 * 185.00012 * 4 2 1 32 32 H 1.09000 * 109.47076 * 304.99295 * 4 2 1 33 33 H 1.08001 * 119.92651 * 0.02956 * 6 5 4 34 34 H 1.08002 * 119.85708 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.93316 * 179.97438 * 8 7 6 36 36 H 1.07996 * 120.07901 * 179.97438 * 9 8 7 37 37 H 0.96994 * 119.99687 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.47261 * 300.00072 * 14 13 11 39 39 H 1.09000 * 109.46902 * 60.00444 * 14 13 11 40 40 H 1.09002 * 109.47083 * 299.99801 * 15 14 13 41 41 H 1.09000 * 109.47288 * 60.00505 * 15 14 13 42 42 H 0.97000 * 119.99694 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 6 0.5712 -2.6280 1.9319 7 6 0.2042 -3.9606 1.8780 8 6 0.9068 -4.8465 1.0801 9 6 1.9792 -4.4052 0.3332 10 6 2.3500 -3.0600 0.3770 11 6 3.4936 -2.5785 -0.4269 12 8 3.8783 -1.4314 -0.3102 13 7 4.1094 -3.4114 -1.2891 14 6 5.2422 -2.9340 -2.0861 15 6 5.7532 -4.0685 -2.9765 16 6 6.9189 -3.5777 -3.7959 17 1 7.2613 -2.5586 -3.6916 18 6 7.5490 -4.4298 -4.6778 19 7 7.1324 -5.6707 -4.8044 20 14 8.9943 -3.8216 -5.6929 21 1 10.0825 -3.3746 -4.7866 22 1 9.4904 -4.9225 -6.5573 23 1 8.5589 -2.6839 -6.5423 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1263 -0.6444 1.2951 32 1 1.6055 -0.2618 2.1370 33 1 0.0188 -1.9419 2.5568 34 1 -0.6339 -4.3115 2.4618 35 1 0.6155 -5.8858 1.0428 36 1 2.5271 -5.0975 -0.2888 37 1 3.8021 -4.3266 -1.3825 38 1 4.9218 -2.0995 -2.7095 39 1 6.0411 -2.6053 -1.4214 40 1 6.0736 -4.9034 -2.3533 41 1 4.9542 -4.3968 -3.6412 42 1 7.5759 -6.2703 -5.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790878597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -39.776260 kcal Electronic energy + Delta-G solvation = -21023.735951 eV Core-core repulsion = 17967.537354 eV Total energy + Delta-G solvation = -3056.198597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34041 -38.13437 -36.23698 -34.77062 -32.91608 -31.46090 -31.37691 -29.36475 -27.06642 -26.53950 -24.93155 -23.44158 -21.83942 -20.91739 -20.31096 -19.69107 -17.57182 -16.44740 -15.81069 -15.65726 -15.05538 -14.94023 -14.76082 -14.43033 -14.25276 -14.11228 -13.55673 -13.10053 -13.02004 -12.60131 -12.36078 -12.30082 -12.13725 -11.86214 -11.60651 -11.34873 -11.18373 -11.03075 -10.80648 -10.69158 -10.62535 -10.47997 -10.26176 -9.70331 -9.40962 -9.10678 -9.02044 -8.74727 -8.50584 -8.31926 -6.09818 -4.12781 0.90151 1.30087 3.10630 3.30952 3.34802 3.37612 3.67885 3.92137 4.41463 4.69184 4.77108 4.83230 4.99876 5.06500 5.12612 5.26831 5.27264 5.33261 5.44391 5.62704 5.68191 5.83576 5.83948 5.85927 5.93082 6.04611 6.13192 6.23829 6.27605 6.34280 6.35782 6.36818 6.42222 6.51346 6.69512 6.73466 6.85674 6.94759 7.50709 7.60588 7.88113 8.01003 8.27123 8.64832 8.92900 9.52085 11.01787 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003893 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.501974 B = 7190.634698 C = 8213.389273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.018 4.018 6 C -0.131 4.131 7 C -0.098 4.098 8 C -0.136 4.136 9 C -0.084 4.084 10 C -0.131 4.131 11 C 0.546 3.454 12 O -0.536 6.536 13 N -0.717 5.717 14 C 0.123 3.877 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.396 0.604 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.395 4.872 13.183 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.019 4.019 6 C -0.149 4.149 7 C -0.117 4.117 8 C -0.154 4.154 9 C -0.103 4.103 10 C -0.134 4.134 11 C 0.333 3.667 12 O -0.415 6.415 13 N -0.367 5.367 14 C 0.001 3.999 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.230 0.770 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.042 5.527 13.129 20.717 hybrid contribution 0.575 -0.458 -0.675 0.998 sum -14.468 5.069 12.454 19.751 Atomic orbital electron populations 1.21940 0.96204 1.01441 1.01098 1.20939 0.94298 0.96101 0.98557 1.21754 1.01754 0.95572 1.00713 1.20930 1.04133 0.89434 0.97538 1.20035 0.92994 0.95977 0.92934 1.21031 0.97392 0.95849 1.00640 1.21289 0.99058 0.93451 0.97860 1.21062 0.96362 0.99980 0.97956 1.21394 0.96403 0.94605 0.97886 1.19996 0.98303 0.94146 1.00984 1.18276 0.82604 0.85686 0.80146 1.90687 1.66170 1.17881 1.66798 1.46310 1.34289 1.14863 1.41265 1.21733 0.85769 0.99362 0.93059 1.19326 0.96492 0.92731 0.93974 1.21007 1.14701 0.97921 1.22452 0.92292 1.24987 0.97457 0.94828 0.96945 1.69943 1.41347 1.05128 1.36898 0.86574 0.82545 0.78333 0.80095 1.20099 1.21236 1.20103 0.93120 0.92854 0.93148 0.90540 0.92068 0.93191 0.93416 0.87673 0.92314 0.85778 0.85940 0.85640 0.85431 0.76984 0.92443 0.92440 0.95971 0.95961 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.94 37.16 0.33 -1.30 16 2 C -0.08 -1.04 2.33 -90.62 -0.21 -1.26 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 4 C -0.08 -1.08 4.10 -27.88 -0.11 -1.19 16 5 C -0.02 -0.24 4.39 -104.23 -0.46 -0.70 16 6 C -0.13 -1.38 8.91 -39.64 -0.35 -1.74 16 7 C -0.10 -0.94 10.04 -39.49 -0.40 -1.34 16 8 C -0.14 -1.38 10.03 -39.64 -0.40 -1.78 16 9 C -0.08 -1.02 9.53 -39.18 -0.37 -1.40 16 10 C -0.13 -1.88 5.84 -104.96 -0.61 -2.49 16 11 C 0.55 9.43 7.27 -12.33 -0.09 9.34 16 12 O -0.54 -10.34 11.87 5.32 0.06 -10.27 16 13 N -0.72 -12.72 5.51 -61.25 -0.34 -13.06 16 14 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.59 6.85 -51.93 -0.36 0.24 16 26 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.08 1.21 6.50 -51.93 -0.34 0.87 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.61 5.95 -51.93 -0.31 1.30 16 32 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 33 H 0.12 1.05 8.02 -52.49 -0.42 0.63 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.40 6.45 -52.49 -0.34 1.06 16 37 H 0.40 6.19 6.54 -40.82 -0.27 5.92 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -30.27 341.10 -8.96 -39.23 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.63 Total: 3.63 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.91 Total: -15.65 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.40 Total: -38.40 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.27 -8.96 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790878597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.550 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds