Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 C 1.53004 * 109.47204 * 120.00230 * 2 1 3 5 5 C 1.50694 * 109.47120 * 64.99604 * 4 2 1 6 6 C 1.37980 * 120.07576 * 258.01417 * 5 4 2 7 7 C 1.38330 * 120.14825 * 180.02562 * 6 5 4 8 8 C 1.38384 * 120.29506 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.14230 * 0.02562 * 8 7 6 10 10 C 1.39559 * 120.07533 * 77.74342 * 5 4 2 11 11 C 1.47849 * 120.14314 * 359.97438 * 10 5 4 12 12 O 1.21554 * 119.99904 * 5.23050 * 11 10 5 13 13 N 1.34777 * 120.00047 * 185.23591 * 11 10 5 14 14 C 1.46501 * 119.99662 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46572 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46805 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00084 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99660 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00213 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99604 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47328 * 60.00312 * 20 18 16 22 22 H 1.48503 * 109.47279 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47191 * 299.99989 * 20 18 16 24 24 H 1.09001 * 109.47304 * 59.99984 * 1 2 3 25 25 H 1.08995 * 109.47478 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46968 * 300.00230 * 1 2 3 27 27 H 1.09000 * 109.47127 * 240.00039 * 2 1 3 28 28 H 1.09005 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47249 * 299.99727 * 3 2 1 30 30 H 1.08996 * 109.47391 * 60.00282 * 3 2 1 31 31 H 1.09004 * 109.47149 * 185.00012 * 4 2 1 32 32 H 1.09000 * 109.47076 * 304.99295 * 4 2 1 33 33 H 1.08001 * 119.92651 * 0.02956 * 6 5 4 34 34 H 1.08002 * 119.85708 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.93316 * 179.97438 * 8 7 6 36 36 H 1.07996 * 120.07901 * 179.97438 * 9 8 7 37 37 H 0.96994 * 119.99687 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.47261 * 300.00072 * 14 13 11 39 39 H 1.09000 * 109.46902 * 60.00444 * 14 13 11 40 40 H 1.09002 * 109.47083 * 299.99801 * 15 14 13 41 41 H 1.09000 * 109.47288 * 60.00505 * 15 14 13 42 42 H 0.97000 * 119.99694 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1889 6 6 0.5712 -2.6280 1.9319 7 6 0.2042 -3.9606 1.8780 8 6 0.9068 -4.8465 1.0801 9 6 1.9792 -4.4052 0.3332 10 6 2.3500 -3.0600 0.3770 11 6 3.4936 -2.5785 -0.4269 12 8 3.8783 -1.4314 -0.3102 13 7 4.1094 -3.4114 -1.2891 14 6 5.2422 -2.9340 -2.0861 15 6 5.7532 -4.0685 -2.9765 16 6 6.9189 -3.5777 -3.7959 17 1 7.2613 -2.5586 -3.6916 18 6 7.5490 -4.4298 -4.6778 19 7 7.1324 -5.6707 -4.8044 20 14 8.9943 -3.8216 -5.6929 21 1 10.0825 -3.3746 -4.7866 22 1 9.4904 -4.9225 -6.5573 23 1 8.5589 -2.6839 -6.5423 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1263 -0.6444 1.2951 32 1 1.6055 -0.2618 2.1370 33 1 0.0188 -1.9419 2.5568 34 1 -0.6339 -4.3115 2.4618 35 1 0.6155 -5.8858 1.0428 36 1 2.5271 -5.0975 -0.2888 37 1 3.8021 -4.3266 -1.3825 38 1 4.9218 -2.0995 -2.7095 39 1 6.0411 -2.6053 -1.4214 40 1 6.0736 -4.9034 -2.3533 41 1 4.9542 -4.3968 -3.6412 42 1 7.5759 -6.2703 -5.4247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790878597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -56.401461 kcal Electronic energy + Delta-G solvation = -21024.456874 eV Core-core repulsion = 17967.537354 eV Total energy + Delta-G solvation = -3056.919519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47784 -39.32538 -37.28642 -36.39877 -34.83940 -32.63025 -32.34530 -31.03028 -27.97677 -27.62411 -26.68386 -24.61995 -23.18239 -22.33150 -21.60590 -20.73425 -18.81700 -18.43891 -16.96725 -16.76707 -16.49551 -16.42031 -16.15041 -15.71758 -15.36355 -15.27220 -14.64940 -14.47276 -14.36120 -14.22312 -13.45661 -13.33299 -13.23947 -13.01999 -12.93035 -12.77357 -12.59920 -12.53263 -12.26381 -12.17632 -11.79338 -11.67556 -11.56395 -11.46555 -11.42140 -10.61397 -10.51134 -10.10607 -9.82493 -9.58885 -8.25327 -6.36195 -0.06643 0.44325 1.40809 1.43241 1.51238 1.94191 2.24176 2.44769 2.91240 3.09340 3.75728 3.80228 3.89631 4.07261 4.17127 4.22492 4.36260 4.46050 4.46816 4.48213 4.56820 4.76896 4.80122 4.82025 4.85311 4.92250 5.00118 5.04731 5.08250 5.15971 5.26578 5.34904 5.42605 5.44941 5.47799 5.53757 5.55051 5.57032 5.73758 5.77114 6.01562 6.14208 6.61640 6.76523 7.26757 7.33198 8.86460 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003893 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.501974 B = 7190.634698 C = 8213.389273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.080 4.080 5 C -0.031 4.031 6 C -0.129 4.129 7 C -0.086 4.086 8 C -0.134 4.134 9 C -0.093 4.093 10 C -0.158 4.158 11 C 0.543 3.457 12 O -0.562 6.562 13 N -0.718 5.718 14 C 0.144 3.856 15 C 0.023 3.977 16 C -0.548 4.548 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.405 0.595 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 4.817 14.546 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.117 4.117 5 C -0.032 4.032 6 C -0.147 4.147 7 C -0.104 4.104 8 C -0.152 4.152 9 C -0.112 4.112 10 C -0.161 4.161 11 C 0.332 3.668 12 O -0.443 6.443 13 N -0.369 5.369 14 C 0.021 3.979 15 C -0.014 4.014 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.190 4.190 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.193 1.193 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.942 5.465 14.507 22.964 hybrid contribution 1.080 -0.471 -1.033 1.566 sum -15.863 4.994 13.474 21.404 Atomic orbital electron populations 1.21860 0.94095 1.01676 1.02233 1.20887 0.95992 0.95976 0.97042 1.21729 1.00265 0.95533 1.01989 1.20835 1.02251 0.90195 0.98385 1.20154 0.93977 0.95598 0.93447 1.21333 0.96376 0.96992 0.99983 1.21755 0.99152 0.92710 0.96736 1.21428 0.95207 1.01602 0.96962 1.21545 0.97391 0.93700 0.98577 1.19831 0.98278 0.95658 1.02362 1.18859 0.83064 0.85152 0.79736 1.90678 1.67097 1.19009 1.67550 1.46129 1.33703 1.15623 1.41423 1.21203 0.86642 0.97589 0.92496 1.19128 0.95429 0.93172 0.93688 1.21426 1.15798 0.98186 1.23272 0.92312 1.25867 1.00237 0.94923 0.98018 1.70050 1.42680 1.06229 1.37612 0.85499 0.79021 0.78037 0.78503 1.19315 1.20471 1.19345 0.92962 0.93020 0.90997 0.94374 0.94394 0.92784 0.91195 0.90898 0.89872 0.83108 0.82249 0.82885 0.85139 0.75834 0.93581 0.93488 0.97401 0.97462 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.94 71.98 0.64 -2.19 16 2 C -0.08 -2.09 2.33 -10.79 -0.03 -2.12 16 3 C -0.14 -3.34 9.19 71.98 0.66 -2.68 16 4 C -0.08 -2.04 4.10 29.85 0.12 -1.92 16 5 C -0.03 -0.77 4.39 -19.61 -0.09 -0.85 16 6 C -0.13 -2.30 8.91 22.23 0.20 -2.10 16 7 C -0.09 -1.27 10.04 22.33 0.22 -1.05 16 8 C -0.13 -2.32 10.03 22.23 0.22 -2.10 16 9 C -0.09 -2.19 9.53 22.53 0.21 -1.97 16 10 C -0.16 -4.57 5.84 -20.09 -0.12 -4.69 16 11 C 0.54 19.72 7.27 86.79 0.63 20.36 16 12 O -0.56 -23.14 11.87 -3.89 -0.05 -23.19 16 13 N -0.72 -26.79 5.51 -465.96 -2.57 -29.35 16 14 C 0.14 6.44 5.61 86.38 0.48 6.93 16 15 C 0.02 1.20 5.09 29.85 0.15 1.35 16 16 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.05 6.85 -2.39 -0.02 1.03 16 26 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.04 1.28 6.50 -2.39 -0.02 1.26 16 28 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.07 2.35 5.95 -2.38 -0.01 2.34 16 32 H 0.08 1.66 7.98 -2.39 -0.02 1.64 16 33 H 0.15 1.86 8.02 -2.91 -0.02 1.84 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.13 2.84 6.45 -2.91 -0.02 2.82 16 37 H 0.41 13.30 6.54 -92.71 -0.61 12.69 16 38 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.42 341.10 4.11 -63.30 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.39 Total: 20.71 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.02 Total: -22.98 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.28 Total: -83.84 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.42 4.11 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790878597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.900 kcal (2) G-P(sol) polarization free energy of solvation -67.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds