Wall clock time and date at job start Mon Mar 30 2020 01:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50704 * 119.99886 * 2 1 4 4 N 1.46895 * 109.46920 * 124.11906 * 3 2 1 5 5 C 1.46893 * 111.00333 * 298.67205 * 4 3 2 6 6 C 1.50705 * 109.46999 * 288.10971 * 5 4 3 7 7 H 1.08005 * 119.99469 * 354.70790 * 6 5 4 8 8 C 1.37877 * 120.00473 * 174.70431 * 6 5 4 9 9 N 1.31513 * 119.99411 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00170 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47448 * 59.99824 * 10 8 6 12 12 H 1.48498 * 109.47041 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47149 * 299.99877 * 10 8 6 14 14 C 1.46908 * 111.00004 * 62.62599 * 4 3 2 15 15 C 1.53002 * 109.47193 * 66.04330 * 14 4 3 16 16 O 1.42897 * 109.47127 * 65.00104 * 15 14 4 17 17 C 1.35901 * 117.00124 * 179.97438 * 16 15 14 18 18 C 1.38758 * 120.05161 * 359.97438 * 17 16 15 19 19 C 1.38123 * 119.94031 * 179.97438 * 18 17 16 20 20 C 1.38291 * 120.05772 * 0.02562 * 19 18 17 21 21 C 1.38241 * 120.11228 * 359.97438 * 20 19 18 22 22 C 1.38172 * 120.05262 * 359.67595 * 21 20 19 23 23 C 1.50699 * 120.02815 * 180.29754 * 22 21 20 24 24 H 1.07992 * 119.99769 * 180.02562 * 1 2 3 25 25 H 1.07992 * 119.99850 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00009 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47244 * 4.11807 * 3 2 1 28 28 H 1.09002 * 109.46830 * 244.11820 * 3 2 1 29 29 H 1.08992 * 109.47420 * 48.10935 * 5 4 3 30 30 H 1.08994 * 109.47434 * 168.11414 * 5 4 3 31 31 H 0.97002 * 119.99641 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.46982 * 306.04393 * 14 4 3 33 33 H 1.08998 * 109.46791 * 186.04029 * 14 4 3 34 34 H 1.08998 * 109.47226 * 304.99958 * 15 14 4 35 35 H 1.08995 * 109.46816 * 184.99714 * 15 14 4 36 36 H 1.07996 * 120.03039 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.96952 * 179.97438 * 19 18 17 38 38 H 1.07992 * 119.94301 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.97292 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47372 * 270.32703 * 23 22 21 41 41 H 1.09004 * 109.47085 * 30.32236 * 23 22 21 42 42 H 1.08992 * 109.47336 * 150.32266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9811 1.3408 1.1466 5 6 2.2437 1.2528 2.4140 6 6 1.5131 2.5476 2.6609 7 1 1.6563 3.3842 1.9931 8 6 0.6618 2.6640 3.7392 9 7 0.4870 1.6450 4.5519 10 14 -0.2444 4.2686 4.0448 11 1 -1.1027 4.5831 2.8745 12 1 -1.0901 4.1362 5.2582 13 1 0.7398 5.3625 4.2449 14 6 3.9880 0.2755 1.0484 15 6 4.8967 0.5419 -0.1535 16 8 5.6379 1.7435 0.0668 17 6 6.4990 2.1256 -0.9127 18 6 6.6283 1.3592 -2.0621 19 6 7.5038 1.7500 -3.0564 20 6 8.2515 2.9037 -2.9068 21 6 8.1246 3.6689 -1.7625 22 6 7.2448 3.2862 -0.7682 23 6 7.1020 4.1244 0.4760 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9352 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3576 2.1323 0.0738 28 1 2.6337 1.3955 -0.9246 29 1 1.5254 0.4348 2.3604 30 1 2.9433 1.0693 3.2294 31 1 -0.1116 1.7270 5.3108 32 1 3.4893 -0.6852 0.9209 33 1 4.5866 0.2563 1.9591 34 1 4.2888 0.6494 -1.0518 35 1 5.5865 -0.2926 -0.2793 36 1 6.0448 0.4580 -2.1793 37 1 7.6050 1.1537 -3.9511 38 1 8.9358 3.2073 -3.6852 39 1 8.7099 4.5693 -1.6479 40 1 7.8181 3.7873 1.2255 41 1 7.2943 5.1697 0.2340 42 1 6.0903 4.0226 0.8685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794735849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:19 Heat of formation + Delta-G solvation = 9.936631 kcal Electronic energy + Delta-G solvation = -21144.870404 eV Core-core repulsion = 18090.827520 eV Total energy + Delta-G solvation = -3054.042884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07242 -37.91562 -36.72269 -32.80734 -32.79185 -32.24028 -30.15939 -29.10463 -26.79181 -26.54164 -25.10765 -23.00838 -21.58450 -21.21763 -20.70182 -18.69768 -17.91335 -16.23981 -16.05909 -15.73920 -15.59401 -14.92847 -14.56752 -14.30863 -14.27817 -13.82394 -13.40020 -13.13317 -13.01201 -12.72007 -12.17448 -12.11704 -11.96853 -11.75179 -11.39705 -11.22328 -11.13216 -10.95807 -10.79471 -10.71697 -10.59433 -10.43155 -10.34452 -9.85808 -9.21334 -8.78076 -8.74195 -8.37341 -7.94479 -7.20841 -5.97622 -3.98044 1.36576 1.53727 2.85062 3.36121 3.40054 3.43450 3.47790 3.82008 4.45524 4.83300 4.86336 4.91099 5.07821 5.22377 5.33447 5.37641 5.39738 5.46334 5.50997 5.56306 5.61733 5.72822 5.78652 5.90456 5.96204 6.02500 6.10350 6.26341 6.38781 6.39732 6.42561 6.52899 6.63094 6.66006 6.90126 7.12802 7.25988 7.32262 7.44228 7.68143 7.85806 8.12617 8.21161 8.57973 9.09591 9.65546 11.12986 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.004461 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.453861 B = 6275.345654 C = 7167.888367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 C 0.087 3.913 4 N -0.520 5.520 5 C 0.191 3.809 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.050 3.950 15 C 0.066 3.934 16 O -0.285 6.285 17 C 0.138 3.862 18 C -0.212 4.212 19 C -0.089 4.089 20 C -0.166 4.166 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.108 4.108 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.005 0.995 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.852 -1.641 -13.396 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.205 4.205 3 C -0.041 4.041 4 N -0.243 5.243 5 C 0.066 3.934 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.079 4.079 15 C -0.010 4.010 16 O -0.197 6.197 17 C 0.092 3.908 18 C -0.231 4.231 19 C -0.107 4.107 20 C -0.184 4.184 21 C -0.104 4.104 22 C -0.118 4.118 23 C -0.164 4.164 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.960 -1.139 -13.011 17.710 hybrid contribution -1.042 -0.341 0.085 1.099 sum 10.919 -1.480 -12.926 16.985 Atomic orbital electron populations 1.23716 0.96053 1.01192 1.00421 1.23573 0.96790 0.99772 1.00376 1.21303 0.94690 0.94428 0.93688 1.62416 1.14766 1.42897 1.04237 1.19771 0.92147 0.97240 0.84256 1.21090 1.24147 0.98238 1.10463 0.92044 1.24951 0.96895 0.96507 0.96137 1.69948 1.37907 1.30366 1.15765 0.86612 0.79667 0.84012 0.77417 1.20359 1.21460 1.20195 1.22127 0.94230 0.94229 0.97267 1.22979 0.93189 0.84807 0.99996 1.86279 1.51367 1.42176 1.39921 1.19006 0.90263 0.93406 0.88144 1.21254 1.04187 1.02288 0.95392 1.20862 0.95454 0.96396 0.98000 1.20942 1.02252 0.96667 0.98558 1.20860 0.97139 0.99407 0.93025 1.19339 0.98576 0.95288 0.98633 1.20637 1.03919 0.97638 0.94246 0.89679 0.88409 0.88693 0.89629 0.92274 0.97680 0.95910 0.93012 0.93373 0.90236 0.92114 0.92673 0.85738 0.86330 0.86403 0.85797 0.91642 0.92106 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 14.32 29.01 0.42 -2.65 16 2 C -0.19 -3.27 7.46 -36.03 -0.27 -3.54 16 3 C 0.09 1.65 5.47 -4.98 -0.03 1.63 16 4 N -0.52 -10.99 4.61 -237.52 -1.09 -12.08 16 5 C 0.19 4.89 4.60 -4.98 -0.02 4.87 16 6 C -0.50 -14.02 8.50 -34.44 -0.29 -14.31 16 7 H 0.06 1.73 7.67 -52.48 -0.40 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.05 0.87 5.17 -3.82 -0.02 0.85 16 15 C 0.07 0.97 4.80 37.16 0.18 1.15 16 16 O -0.29 -4.79 9.13 -19.43 -0.18 -4.96 16 17 C 0.14 2.08 6.66 -39.22 -0.26 1.82 16 18 C -0.21 -2.74 9.04 -39.43 -0.36 -3.10 16 19 C -0.09 -1.00 10.04 -39.60 -0.40 -1.40 16 20 C -0.17 -1.81 10.04 -39.56 -0.40 -2.21 16 21 C -0.09 -1.02 9.70 -39.60 -0.38 -1.40 16 22 C -0.12 -1.65 5.89 -104.47 -0.62 -2.26 16 23 C -0.11 -1.44 9.79 36.01 0.35 -1.09 16 24 H 0.08 1.32 8.06 -52.49 -0.42 0.89 16 25 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 26 H 0.10 1.54 6.75 -52.48 -0.35 1.18 16 27 H 0.09 1.80 7.01 -51.93 -0.36 1.44 16 28 H 0.06 1.00 6.26 -51.93 -0.33 0.68 16 29 H 0.01 0.15 6.77 -51.93 -0.35 -0.21 16 30 H 0.02 0.63 7.81 -51.93 -0.41 0.23 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.05 0.78 6.26 -51.93 -0.33 0.45 16 33 H 0.08 1.43 7.86 -51.93 -0.41 1.03 16 34 H 0.06 0.85 5.81 -51.93 -0.30 0.55 16 35 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 42 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -30.52 343.11 -9.02 -39.54 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.44 Total: 1.71 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.19 Total: -20.17 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.36 Total: -38.06 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.18 Total: -4.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.52 -9.02 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794735849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.477 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds