Wall clock time and date at job start Mon Mar 30 2020 01:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99303 * 2 1 4 4 N 1.46903 * 109.46839 * 124.36195 * 3 2 1 5 5 C 1.46905 * 110.99960 * 199.65888 * 4 3 2 6 6 C 1.50705 * 109.46788 * 66.04735 * 5 4 3 7 7 H 1.07997 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47092 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46901 * 120.00358 * 10 8 6 13 13 H 1.48503 * 109.47252 * 239.99918 * 10 8 6 14 14 C 1.46901 * 111.00026 * 75.71200 * 4 3 2 15 15 C 1.53004 * 109.46773 * 200.10895 * 14 4 3 16 16 O 1.42893 * 109.47361 * 64.99855 * 15 14 4 17 17 C 1.35905 * 116.99896 * 179.60728 * 16 15 14 18 18 C 1.38727 * 120.05497 * 359.72471 * 17 16 15 19 19 C 1.38149 * 119.94613 * 179.76673 * 18 17 16 20 20 C 1.38263 * 120.04986 * 0.51270 * 19 18 17 21 21 C 1.50708 * 119.94510 * 179.76543 * 20 19 18 22 22 C 1.38268 * 120.11690 * 359.74136 * 20 19 18 23 23 C 1.38149 * 120.05020 * 0.02562 * 22 20 19 24 24 H 1.07996 * 120.00459 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99299 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00459 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47852 * 4.36219 * 3 2 1 28 28 H 1.09007 * 109.47340 * 244.35865 * 3 2 1 29 29 H 1.08994 * 109.47394 * 186.04552 * 5 4 3 30 30 H 1.08997 * 109.47310 * 306.04774 * 5 4 3 31 31 H 0.96999 * 119.99532 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47593 * 80.10515 * 14 4 3 33 33 H 1.09005 * 109.46824 * 320.09764 * 14 4 3 34 34 H 1.09002 * 109.46859 * 304.99523 * 15 14 4 35 35 H 1.09006 * 109.46774 * 185.00702 * 15 14 4 36 36 H 1.08009 * 120.02962 * 359.97438 * 18 17 16 37 37 H 1.08000 * 119.97619 * 180.25315 * 19 18 17 38 38 H 1.09000 * 109.47207 * 269.98065 * 21 20 19 39 39 H 1.09003 * 109.46768 * 29.97545 * 21 20 19 40 40 H 1.08996 * 109.47392 * 149.97281 * 21 20 19 41 41 H 1.08002 * 119.97676 * 179.97438 * 22 20 19 42 42 H 1.07998 * 120.02142 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9852 1.3384 1.1433 5 6 3.3840 2.7168 1.4582 6 6 2.1837 3.4887 1.9427 7 1 1.2210 3.0039 2.0097 8 6 2.3147 4.8137 2.3006 9 7 3.4870 5.4042 2.2185 10 14 0.8269 5.7706 2.9005 11 1 -0.3647 4.8844 2.9001 12 1 1.0774 6.2619 4.2794 13 1 0.5853 6.9262 1.9996 14 6 4.1613 0.4937 0.8961 15 6 4.8280 0.1452 2.2284 16 8 3.9417 -0.6597 3.0084 17 6 4.3875 -1.0655 4.2265 18 6 5.6541 -0.7012 4.6595 19 6 6.1032 -1.1109 5.9001 20 6 5.2953 -1.8921 6.7054 21 6 5.7896 -2.3421 8.0562 22 6 4.0345 -2.2610 6.2740 23 6 3.5791 -1.8498 5.0363 24 1 -0.5401 0.9352 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3577 2.1321 0.0782 28 1 2.6302 1.3976 -0.9265 29 1 4.1471 2.7056 2.2363 30 1 3.7848 3.1925 0.5631 31 1 3.5791 6.3365 2.4700 32 1 4.8690 1.0317 0.2654 33 1 3.8512 -0.4230 0.3943 34 1 5.0580 1.0625 2.7705 35 1 5.7493 -0.4063 2.0403 36 1 6.2875 -0.0950 4.0286 37 1 7.0876 -0.8242 6.2393 38 1 6.3028 -3.2984 7.9552 39 1 6.4802 -1.5997 8.4562 40 1 4.9434 -2.4536 8.7341 41 1 3.4055 -2.8716 6.9048 42 1 2.5944 -2.1385 4.6996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794743565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:23 Heat of formation + Delta-G solvation = 5.898585 kcal Electronic energy + Delta-G solvation = -20886.639547 eV Core-core repulsion = 17832.421560 eV Total energy + Delta-G solvation = -3054.217987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85996 -37.79834 -36.67702 -33.20150 -32.54469 -31.74432 -30.87317 -29.32836 -27.03528 -26.08198 -24.49148 -23.26634 -22.00517 -21.08724 -20.12679 -19.03927 -17.90922 -16.49504 -15.85714 -15.57681 -15.19552 -14.87506 -14.68980 -14.25264 -13.96832 -13.73443 -13.51628 -13.32274 -13.27838 -12.65639 -12.28349 -12.14695 -11.94109 -11.91476 -11.50516 -11.36637 -11.31402 -10.93305 -10.76571 -10.66391 -10.51188 -10.33424 -10.15231 -9.76891 -9.20348 -8.85087 -8.84254 -8.44850 -7.77356 -7.23780 -6.04038 -4.04399 1.50586 1.62057 2.80579 3.31036 3.38709 3.44274 3.60418 3.92970 4.42973 4.87940 4.93483 4.96635 5.10623 5.27800 5.31854 5.40202 5.44198 5.50321 5.56323 5.58652 5.66567 5.73445 5.79966 5.85145 5.90000 5.99452 6.13970 6.20157 6.22130 6.33363 6.45987 6.57252 6.59110 6.72992 6.98930 7.10361 7.20778 7.28587 7.35045 7.77554 7.84196 8.06022 8.18289 8.52815 9.03862 9.59972 11.07034 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004813 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.015393 B = 5815.898960 C = 6816.870703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C 0.084 3.916 4 N -0.525 5.525 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.065 0.935 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.054 3.946 15 C 0.069 3.931 16 O -0.291 6.291 17 C 0.140 3.860 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.082 4.082 23 C -0.153 4.153 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.031 0.969 30 H -0.009 1.009 31 H 0.260 0.740 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.123 0.877 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -14.715 3.516 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.145 4.145 3 C -0.044 4.044 4 N -0.249 5.249 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.075 4.075 15 C -0.007 4.007 16 O -0.204 6.204 17 C 0.094 3.906 18 C -0.228 4.228 19 C -0.098 4.098 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.100 4.100 23 C -0.172 4.172 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.616 -14.743 3.847 15.660 hybrid contribution 0.000 1.138 -0.298 1.176 sum 3.616 -13.605 3.549 14.518 Atomic orbital electron populations 1.23673 0.95981 1.01105 1.03327 1.22955 0.95846 0.98397 0.97339 1.21178 0.96151 0.95692 0.91351 1.62094 1.12914 1.13549 1.36391 1.19811 0.96874 0.81519 0.95239 1.21192 0.95432 0.94704 1.42929 0.91702 1.24973 0.96023 0.97703 0.95855 1.69963 1.22912 1.12077 1.49006 0.86471 0.83003 0.79769 0.78404 1.19582 1.21013 1.21114 1.22093 0.93822 0.98079 0.93519 1.22918 0.91251 0.93997 0.92516 1.86201 1.43430 1.65261 1.25464 1.19136 0.92171 0.93258 0.86052 1.21291 0.96637 1.05983 0.98887 1.20772 0.99077 0.96650 0.93323 1.19727 0.95290 1.01666 0.97400 1.20667 1.01103 1.00955 0.93448 1.20775 0.95239 0.98950 0.95067 1.20421 1.00515 1.01748 0.94489 0.88691 0.89359 0.88410 0.88978 0.95434 0.95148 0.99136 0.93011 0.93370 0.91099 0.91235 0.92830 0.85561 0.86265 0.91876 0.91983 0.91945 0.85873 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 14.32 29.01 0.42 -2.77 16 2 C -0.13 -2.14 9.32 -36.03 -0.34 -2.48 16 3 C 0.08 1.64 5.24 -4.98 -0.03 1.61 16 4 N -0.53 -11.27 4.29 -237.51 -1.02 -12.29 16 5 C 0.19 4.88 4.55 -4.97 -0.02 4.86 16 6 C -0.50 -14.15 8.23 -34.44 -0.28 -14.44 16 7 H 0.06 1.84 7.31 -52.49 -0.38 1.45 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.05 0.94 5.19 -3.82 -0.02 0.92 16 15 C 0.07 1.16 4.93 37.16 0.18 1.34 16 16 O -0.29 -5.33 10.08 -19.44 -0.20 -5.53 16 17 C 0.14 2.34 6.69 -39.22 -0.26 2.08 16 18 C -0.21 -3.14 9.04 -39.43 -0.36 -3.50 16 19 C -0.08 -1.06 9.69 -39.61 -0.38 -1.44 16 20 C -0.14 -1.75 5.88 -104.60 -0.62 -2.37 16 21 C -0.10 -0.97 10.01 36.01 0.36 -0.61 16 22 C -0.08 -1.06 9.69 -39.60 -0.38 -1.44 16 23 C -0.15 -2.30 9.99 -39.43 -0.39 -2.69 16 24 H 0.09 1.52 7.84 -52.49 -0.41 1.10 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.10 1.53 7.29 -52.49 -0.38 1.15 16 27 H 0.09 1.99 6.22 -51.93 -0.32 1.67 16 28 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 29 H 0.03 0.83 6.59 -51.93 -0.34 0.49 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 0.81 7.99 -51.93 -0.42 0.40 16 33 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 34 H 0.07 1.30 6.24 -51.93 -0.32 0.98 16 35 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 36 H 0.13 1.77 6.30 -52.48 -0.33 1.44 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -30.76 347.95 -9.07 -39.83 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.59 Total: 1.27 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.22 Total: -19.45 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.28 Total: -38.17 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.20 Total: -5.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.76 -9.07 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794743565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.725 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds