Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99303 * 2 1 4 4 N 1.46903 * 109.46839 * 124.36195 * 3 2 1 5 5 C 1.46905 * 110.99960 * 199.65888 * 4 3 2 6 6 C 1.50705 * 109.46788 * 66.04735 * 5 4 3 7 7 H 1.07997 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47092 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46901 * 120.00358 * 10 8 6 13 13 H 1.48503 * 109.47252 * 239.99918 * 10 8 6 14 14 C 1.46901 * 111.00026 * 75.71200 * 4 3 2 15 15 C 1.53004 * 109.46773 * 200.10895 * 14 4 3 16 16 O 1.42893 * 109.47361 * 64.99855 * 15 14 4 17 17 C 1.35905 * 116.99896 * 179.60728 * 16 15 14 18 18 C 1.38727 * 120.05497 * 359.72471 * 17 16 15 19 19 C 1.38149 * 119.94613 * 179.76673 * 18 17 16 20 20 C 1.38263 * 120.04986 * 0.51270 * 19 18 17 21 21 C 1.50708 * 119.94510 * 179.76543 * 20 19 18 22 22 C 1.38268 * 120.11690 * 359.74136 * 20 19 18 23 23 C 1.38149 * 120.05020 * 0.02562 * 22 20 19 24 24 H 1.07996 * 120.00459 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99299 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00459 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47852 * 4.36219 * 3 2 1 28 28 H 1.09007 * 109.47340 * 244.35865 * 3 2 1 29 29 H 1.08994 * 109.47394 * 186.04552 * 5 4 3 30 30 H 1.08997 * 109.47310 * 306.04774 * 5 4 3 31 31 H 0.96999 * 119.99532 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47593 * 80.10515 * 14 4 3 33 33 H 1.09005 * 109.46824 * 320.09764 * 14 4 3 34 34 H 1.09002 * 109.46859 * 304.99523 * 15 14 4 35 35 H 1.09006 * 109.46774 * 185.00702 * 15 14 4 36 36 H 1.08009 * 120.02962 * 359.97438 * 18 17 16 37 37 H 1.08000 * 119.97619 * 180.25315 * 19 18 17 38 38 H 1.09000 * 109.47207 * 269.98065 * 21 20 19 39 39 H 1.09003 * 109.46768 * 29.97545 * 21 20 19 40 40 H 1.08996 * 109.47392 * 149.97281 * 21 20 19 41 41 H 1.08002 * 119.97676 * 179.97438 * 22 20 19 42 42 H 1.07998 * 120.02142 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9852 1.3384 1.1433 5 6 3.3840 2.7168 1.4582 6 6 2.1837 3.4887 1.9427 7 1 1.2210 3.0039 2.0097 8 6 2.3147 4.8137 2.3006 9 7 3.4870 5.4042 2.2185 10 14 0.8269 5.7706 2.9005 11 1 -0.3647 4.8844 2.9001 12 1 1.0774 6.2619 4.2794 13 1 0.5853 6.9262 1.9996 14 6 4.1613 0.4937 0.8961 15 6 4.8280 0.1452 2.2284 16 8 3.9417 -0.6597 3.0084 17 6 4.3875 -1.0655 4.2265 18 6 5.6541 -0.7012 4.6595 19 6 6.1032 -1.1109 5.9001 20 6 5.2953 -1.8921 6.7054 21 6 5.7896 -2.3421 8.0562 22 6 4.0345 -2.2610 6.2740 23 6 3.5791 -1.8498 5.0363 24 1 -0.5401 0.9352 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3577 2.1321 0.0782 28 1 2.6302 1.3976 -0.9265 29 1 4.1471 2.7056 2.2363 30 1 3.7848 3.1925 0.5631 31 1 3.5791 6.3365 2.4700 32 1 4.8690 1.0317 0.2654 33 1 3.8512 -0.4230 0.3943 34 1 5.0580 1.0625 2.7705 35 1 5.7493 -0.4063 2.0403 36 1 6.2875 -0.0950 4.0286 37 1 7.0876 -0.8242 6.2393 38 1 6.3028 -3.2984 7.9552 39 1 6.4802 -1.5997 8.4562 40 1 4.9434 -2.4536 8.7341 41 1 3.4055 -2.8716 6.9048 42 1 2.5944 -2.1385 4.6996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794743565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -11.551558 kcal Electronic energy + Delta-G solvation = -20887.396242 eV Core-core repulsion = 17832.421560 eV Total energy + Delta-G solvation = -3054.974682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03191 -39.15978 -38.09905 -34.98479 -34.21277 -32.85548 -31.94512 -30.83733 -28.90388 -27.06808 -26.11450 -24.80160 -23.34090 -22.32709 -21.57581 -20.43615 -19.14945 -18.55916 -17.26351 -16.94820 -16.63602 -16.21942 -16.16056 -15.54903 -15.45162 -15.19501 -14.66142 -14.40850 -14.36161 -14.14298 -14.00492 -13.60908 -13.34484 -13.16205 -12.91077 -12.73801 -12.70689 -12.45519 -12.34994 -12.29072 -11.98869 -11.77923 -11.58193 -11.39731 -11.21198 -10.62684 -10.22142 -9.91569 -8.96802 -8.89437 -8.22426 -6.30848 0.43128 0.53128 1.37420 1.38783 1.48667 1.52276 2.35821 2.39516 2.84966 3.10360 3.34161 3.86342 3.98460 4.01574 4.09073 4.12893 4.22240 4.32511 4.43052 4.47490 4.48815 4.49425 4.61209 4.76263 4.80878 4.87700 4.92088 4.93358 5.04272 5.13376 5.21504 5.23024 5.23621 5.42758 5.48774 5.64264 5.72046 5.78356 5.96164 6.02466 6.05608 6.34439 6.55378 6.66329 6.85021 7.38383 8.88787 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.004813 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.015393 B = 5815.898960 C = 6816.870703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.085 3.915 4 N -0.536 5.536 5 C 0.208 3.792 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.275 1.275 14 C 0.053 3.947 15 C 0.075 3.925 16 O -0.313 6.313 17 C 0.106 3.894 18 C -0.222 4.222 19 C -0.088 4.088 20 C -0.138 4.138 21 C -0.104 4.104 22 C -0.083 4.083 23 C -0.168 4.168 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.007 0.993 30 H -0.034 1.034 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.152 0.848 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 -16.312 4.729 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.159 4.159 3 C -0.042 4.042 4 N -0.260 5.260 5 C 0.082 3.918 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.201 1.201 14 C -0.075 4.075 15 C -0.001 4.001 16 O -0.227 6.227 17 C 0.060 3.940 18 C -0.241 4.241 19 C -0.106 4.106 20 C -0.138 4.138 21 C -0.160 4.160 22 C -0.101 4.101 23 C -0.187 4.187 24 H 0.105 0.895 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.025 0.975 30 H -0.017 1.017 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.170 0.830 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.102 -16.362 5.056 17.404 hybrid contribution 0.182 1.562 -0.628 1.693 sum 3.284 -14.800 4.427 15.793 Atomic orbital electron populations 1.23891 0.95630 1.02170 1.01030 1.22857 0.96246 0.97432 0.99373 1.21137 0.95563 0.96535 0.90982 1.62019 1.14750 1.11273 1.37954 1.19422 0.95364 0.83812 0.93220 1.21456 0.95798 0.95414 1.43096 0.92442 1.25829 0.98944 0.98692 0.95877 1.70074 1.24931 1.12551 1.49806 0.85426 0.79436 0.78385 0.77976 1.19011 1.20500 1.20080 1.22209 0.92709 0.98190 0.94425 1.22831 0.92311 0.93300 0.91636 1.86134 1.44326 1.65708 1.26531 1.19462 0.93431 0.95010 0.86088 1.21445 0.96333 1.06352 0.99952 1.21123 1.00298 0.96499 0.92685 1.20198 0.94844 1.00246 0.98560 1.20736 1.01895 1.01861 0.91524 1.21147 0.95860 0.98664 0.94424 1.20657 1.00635 1.02012 0.95366 0.89470 0.86396 0.86683 0.91794 0.94640 0.97542 1.01678 0.92707 0.92707 0.88749 0.94095 0.89673 0.85512 0.83996 0.90281 0.91118 0.90696 0.83004 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.63 14.32 67.77 0.97 -4.66 16 2 C -0.14 -4.61 9.32 25.64 0.24 -4.37 16 3 C 0.09 3.38 5.24 85.55 0.45 3.83 16 4 N -0.54 -23.64 4.29 -905.34 -3.89 -27.53 16 5 C 0.21 11.18 4.55 85.56 0.39 11.57 16 6 C -0.52 -30.12 8.23 25.60 0.21 -29.91 16 7 H 0.06 3.34 7.31 -2.91 -0.02 3.32 16 8 C 0.00 0.26 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 10 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.05 1.87 5.19 86.30 0.45 2.32 16 15 C 0.07 2.58 4.93 71.98 0.36 2.93 16 16 O -0.31 -11.73 10.08 -92.48 -0.93 -12.66 16 17 C 0.11 3.57 6.69 22.50 0.15 3.72 16 18 C -0.22 -6.71 9.04 22.37 0.20 -6.51 16 19 C -0.09 -2.22 9.69 22.25 0.22 -2.00 16 20 C -0.14 -3.14 5.88 -19.85 -0.12 -3.26 16 21 C -0.10 -1.57 10.01 71.24 0.71 -0.86 16 22 C -0.08 -1.99 9.69 22.26 0.22 -1.78 16 23 C -0.17 -5.00 9.99 22.37 0.22 -4.78 16 24 H 0.09 2.72 7.84 -2.91 -0.02 2.69 16 25 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.12 3.38 7.29 -2.91 -0.02 3.36 16 27 H 0.06 2.86 6.22 -2.39 -0.01 2.85 16 28 H 0.04 1.32 8.00 -2.38 -0.02 1.31 16 29 H 0.01 0.38 6.59 -2.39 -0.02 0.36 16 30 H -0.03 -1.98 8.12 -2.39 -0.02 -2.00 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 33 H 0.09 2.89 6.81 -2.38 -0.02 2.88 16 34 H 0.04 1.63 6.24 -2.39 -0.01 1.61 16 35 H 0.09 2.34 7.63 -2.38 -0.02 2.32 16 36 H 0.13 3.66 6.30 -2.91 -0.02 3.64 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 40 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.93 347.95 3.60 -64.33 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.98 Total: 17.83 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 5.13 Total: -33.02 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.60 Total: -83.79 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.93 Total: -12.66 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.93 3.60 -64.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794743565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.780 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds