Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35897 * 117.00042 * 2 1 4 4 C 1.38757 * 120.05727 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94476 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05733 * 0.27018 * 5 4 3 7 7 C 1.50696 * 119.94368 * 179.70518 * 6 5 4 8 8 N 1.46898 * 109.47174 * 89.81639 * 7 6 5 9 9 C 1.46902 * 111.00097 * 174.69114 * 8 7 6 10 10 C 1.53003 * 109.47194 * 182.48898 * 9 8 7 11 11 C 1.50703 * 115.54798 * 64.83414 * 10 9 8 12 12 H 1.08000 * 119.99654 * 265.93788 * 11 10 9 13 13 C 1.37878 * 119.99877 * 85.93627 * 11 10 9 14 14 N 1.31517 * 119.99541 * 181.59212 * 13 11 10 15 15 Si 1.86794 * 120.00168 * 1.59341 * 13 11 10 16 16 H 1.48502 * 109.47350 * 84.79723 * 15 13 11 17 17 H 1.48499 * 109.47163 * 204.79901 * 15 13 11 18 18 H 1.48501 * 109.47328 * 324.79836 * 15 13 11 19 19 C 1.52992 * 117.50051 * 279.16545 * 10 9 8 20 20 C 1.52999 * 117.49808 * 210.50145 * 10 9 8 21 21 C 1.38243 * 120.10837 * 359.45373 * 6 5 4 22 22 C 1.38162 * 120.05550 * 0.55112 * 21 6 5 23 23 C 1.50701 * 120.02673 * 179.70002 * 22 21 6 24 24 H 1.08999 * 109.47135 * 60.00280 * 1 2 3 25 25 H 1.09006 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47008 * 299.99733 * 1 2 3 27 27 H 1.08000 * 120.02126 * 0.02562 * 4 3 2 28 28 H 1.08004 * 119.97013 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47119 * 209.82006 * 7 6 5 30 30 H 1.09006 * 109.47152 * 329.81787 * 7 6 5 31 31 H 1.00901 * 111.00404 * 298.64719 * 8 7 6 32 32 H 1.09002 * 109.47266 * 302.49108 * 9 8 7 33 33 H 1.08995 * 109.47063 * 62.49422 * 9 8 7 34 34 H 0.97002 * 119.99825 * 180.02562 * 14 13 11 35 35 H 1.09001 * 117.50114 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.50061 * 145.02154 * 19 10 9 37 37 H 1.09001 * 117.49651 * 214.98146 * 20 10 9 38 38 H 1.08993 * 117.49776 * 359.97438 * 20 10 9 39 39 H 1.08001 * 119.96895 * 180.29542 * 21 6 5 40 40 H 1.09002 * 109.47447 * 270.02107 * 23 22 21 41 41 H 1.09006 * 109.47132 * 30.02319 * 23 22 21 42 42 H 1.09007 * 109.46992 * 150.01884 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0067 7 6 3.9860 5.0185 -0.0140 8 7 4.2098 5.4615 1.3686 9 6 4.9870 6.7076 1.4028 10 6 5.2524 7.1034 2.8568 11 6 6.1204 6.1532 3.6409 12 1 5.6671 5.3791 4.2423 13 6 7.4931 6.2722 3.5905 14 7 8.2513 5.4236 4.2499 15 14 8.2759 7.6386 2.5858 16 1 8.3365 8.8792 3.3998 17 1 9.6503 7.2378 2.1913 18 1 7.4633 7.8852 1.3676 19 6 4.1300 7.8201 3.6099 20 6 5.3749 8.5956 3.1716 21 6 4.0560 2.5171 -0.0004 22 6 3.4311 1.2848 0.0000 23 6 4.2537 0.0221 0.0000 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3203 -0.0005 28 1 1.3340 4.5113 -0.0011 29 1 4.9434 4.9357 -0.5285 30 1 3.3574 5.7437 -0.5307 31 1 3.3352 5.5673 1.8605 32 1 5.9361 6.5582 0.8879 33 1 4.4256 7.4997 0.9074 34 1 9.2170 5.5075 4.2147 35 1 3.2026 8.0101 3.0696 36 1 4.0196 7.6048 4.6727 37 1 6.0830 8.8901 3.9462 38 1 5.2669 9.2953 2.3429 39 1 5.1344 2.5752 0.0000 40 1 4.4521 -0.2823 -1.0276 41 1 5.1978 0.2035 0.5139 42 1 3.7063 -0.7681 0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797468180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = 11.282297 kcal Electronic energy + Delta-G solvation = -20862.318033 eV Core-core repulsion = 17808.333502 eV Total energy + Delta-G solvation = -3053.984531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20633 -37.92013 -37.15049 -34.55988 -32.60376 -31.93175 -30.39392 -27.81395 -26.96988 -26.12098 -25.06165 -23.09474 -21.90776 -21.54851 -20.34341 -18.84336 -17.95273 -16.57645 -16.23852 -15.82957 -15.32677 -14.84436 -14.41042 -14.30260 -14.13883 -13.68230 -13.58429 -13.37487 -13.03130 -12.82296 -12.51751 -12.21677 -12.04806 -11.96464 -11.70395 -11.53542 -11.11293 -10.97198 -10.94028 -10.69120 -10.50622 -10.36517 -10.01877 -9.50188 -8.99004 -8.66587 -8.47571 -8.39991 -7.95452 -7.61238 -5.95886 -3.94942 1.46514 1.53542 3.25221 3.36098 3.44723 3.47678 3.81516 4.52936 4.72422 4.78776 4.86425 4.97545 5.00088 5.06763 5.22612 5.28445 5.31953 5.40371 5.45684 5.58358 5.70392 5.77228 5.79811 5.89575 5.92940 6.06551 6.10075 6.20772 6.23650 6.33305 6.41425 6.47106 6.51957 6.53116 6.76824 6.85047 6.91560 7.11372 7.23131 7.41704 7.76728 7.85660 8.08329 8.67403 9.10091 9.67446 11.16939 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.004094 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.531991 B = 6837.086524 C = 7395.690998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.117 3.883 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.100 4.100 7 C 0.100 3.900 8 N -0.659 5.659 9 C 0.099 3.901 10 C 0.009 3.991 11 C -0.460 4.460 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.264 1.264 19 C -0.184 4.184 20 C -0.205 4.205 21 C -0.056 4.056 22 C -0.117 4.117 23 C -0.104 4.104 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.335 0.665 32 H 0.069 0.931 33 H 0.001 0.999 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 -6.368 -11.274 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.072 3.928 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.101 4.101 7 C -0.029 4.029 8 N -0.290 5.290 9 C -0.030 4.030 10 C 0.008 3.992 11 C -0.498 4.498 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.542 5.542 15 Si 0.709 3.291 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.189 1.189 19 C -0.221 4.221 20 C -0.243 4.243 21 C -0.075 4.075 22 C -0.117 4.117 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.251 -7.014 -11.144 18.681 hybrid contribution -0.481 1.663 -0.726 1.877 sum -13.732 -5.351 -11.870 18.924 Atomic orbital electron populations 1.22999 0.78932 1.03531 1.01200 1.86039 1.20866 1.27143 1.89029 1.18795 0.91812 0.83955 0.98254 1.21077 0.99505 0.92330 1.09589 1.20769 0.94058 0.96772 0.98542 1.19749 0.93048 0.95382 1.01906 1.20825 0.98968 0.91559 0.91539 1.60200 1.23318 1.33753 1.11681 1.21745 0.96478 0.87707 0.97046 1.19434 0.97664 0.90081 0.92030 1.20153 0.89536 1.13806 1.26302 0.90417 1.24932 0.97110 0.95719 0.94988 1.69899 1.04670 1.36727 1.42860 0.86883 0.77960 0.82659 0.81570 1.20635 1.22426 1.18876 1.22789 0.91489 1.07146 1.00667 1.23011 1.01699 0.96695 1.02931 1.20844 1.00228 0.90197 0.96221 1.19257 0.90466 0.96241 1.05782 1.20598 0.99124 0.94448 1.01894 0.92945 0.88562 0.92768 0.85908 0.86319 0.90545 0.95607 0.84715 0.91299 0.98089 0.92857 0.91495 0.89582 0.89362 0.91277 0.84978 0.91754 0.91321 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.90 9.54 -19.42 -0.19 -4.09 16 3 C 0.12 1.60 6.66 -39.22 -0.26 1.34 16 4 C -0.21 -2.60 9.04 -39.43 -0.36 -2.95 16 5 C -0.08 -1.10 9.69 -39.61 -0.38 -1.48 16 6 C -0.10 -1.50 5.44 -104.60 -0.57 -2.07 16 7 C 0.10 1.57 5.80 -4.98 -0.03 1.54 16 8 N -0.66 -12.50 6.35 -115.06 -0.73 -13.23 16 9 C 0.10 2.05 5.19 -3.82 -0.02 2.03 16 10 C 0.01 0.21 1.00 -155.66 -0.16 0.05 16 11 C -0.46 -12.89 9.33 -34.44 -0.32 -13.21 16 12 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 15 Si 0.88 21.95 24.78 -169.99 -4.21 17.74 16 16 H -0.28 -6.86 7.04 56.52 0.40 -6.46 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.26 -6.21 5.95 56.52 0.34 -5.88 16 19 C -0.18 -3.72 9.96 -26.70 -0.27 -3.99 16 20 C -0.21 -4.39 7.61 -26.69 -0.20 -4.60 16 21 C -0.06 -0.86 9.35 -39.61 -0.37 -1.23 16 22 C -0.12 -1.68 5.89 -104.48 -0.62 -2.29 16 23 C -0.10 -1.28 9.79 36.01 0.35 -0.93 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 28 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 30 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.34 6.04 8.81 -39.29 -0.35 5.70 16 32 H 0.07 1.53 6.69 -51.93 -0.35 1.18 16 33 H 0.00 0.02 8.09 -51.93 -0.42 -0.40 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.09 2.00 7.15 -51.93 -0.37 1.63 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -31.33 342.09 -8.35 -39.68 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.85 Total: 6.37 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -2.30 Total: -24.55 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.04 Total: -40.31 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.19 Total: -4.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.21 Total: 17.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.33 -8.35 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797468180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.966 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds