Wall clock time and date at job start Mon Mar 30 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.96995 * 2 1 4 4 C 1.38243 * 120.10869 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05909 * 359.76371 * 4 3 2 6 6 C 1.50697 * 120.03057 * 180.25179 * 5 4 3 7 7 H 1.09000 * 109.47084 * 213.27834 * 6 5 4 8 8 C 1.53003 * 109.46760 * 93.27686 * 6 5 4 9 9 N 1.46904 * 109.46989 * 333.28077 * 6 5 4 10 10 C 1.46906 * 110.99500 * 206.04310 * 9 6 5 11 11 C 1.52996 * 109.46837 * 185.14295 * 10 9 6 12 12 C 1.50704 * 115.54645 * 275.59031 * 11 10 9 13 13 H 1.08002 * 120.00015 * 114.48250 * 12 11 10 14 14 C 1.37878 * 120.00252 * 294.47490 * 12 11 10 15 15 N 1.31517 * 119.99560 * 353.14523 * 14 12 11 16 16 Si 1.86794 * 120.00155 * 173.13581 * 14 12 11 17 17 H 1.48503 * 109.47014 * 90.00322 * 16 14 12 18 18 H 1.48502 * 109.47378 * 210.00365 * 16 14 12 19 19 H 1.48506 * 109.47371 * 330.00899 * 16 14 12 20 20 C 1.52994 * 117.50056 * 129.88304 * 11 10 9 21 21 C 1.52998 * 60.00270 * 252.50426 * 20 11 10 22 22 C 1.38715 * 119.93741 * 0.53403 * 5 4 3 23 23 O 1.35897 * 120.05151 * 179.71626 * 22 5 4 24 24 C 1.38123 * 119.97423 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47338 * 269.97755 * 1 2 3 26 26 H 1.09002 * 109.46983 * 29.97895 * 1 2 3 27 27 H 1.08996 * 109.46605 * 149.97437 * 1 2 3 28 28 H 1.07997 * 119.94563 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.96880 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47443 * 299.99928 * 8 6 5 31 31 H 1.09005 * 109.46900 * 60.00234 * 8 6 5 32 32 H 1.08997 * 109.47196 * 179.97438 * 8 6 5 33 33 H 1.00893 * 111.00048 * 329.99872 * 9 6 5 34 34 H 1.09003 * 109.47195 * 305.13970 * 10 9 6 35 35 H 1.08992 * 109.47220 * 65.13870 * 10 9 6 36 36 H 0.97000 * 119.99413 * 185.00402 * 15 14 12 37 37 H 1.09000 * 117.50402 * 0.02562 * 20 11 10 38 38 H 1.09004 * 117.49719 * 145.01802 * 20 11 10 39 39 H 1.08996 * 117.50077 * 252.50653 * 21 20 11 40 40 H 1.09005 * 117.51345 * 107.47641 * 21 20 11 41 41 H 0.96700 * 114.00442 * 269.72518 * 23 22 5 42 42 H 1.07995 * 120.02309 * 0.02761 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2753 0.0072 0.0060 6 6 5.7822 0.0116 0.0123 7 1 6.1504 -0.8477 -0.5482 8 6 6.2863 -0.0663 1.4548 9 7 6.2708 1.2488 -0.6110 10 6 7.6111 1.0571 -1.1813 11 6 8.1381 2.3943 -1.7058 12 6 7.6987 2.7646 -3.0990 13 1 7.0605 3.6220 -3.2539 14 6 8.1117 2.0091 -4.1758 15 7 8.9945 1.0492 -4.0056 16 14 7.4171 2.3485 -5.8762 17 1 8.2691 3.3487 -6.5683 18 1 7.3946 1.0888 -6.6624 19 1 6.0354 2.8780 -5.7500 20 6 9.5416 2.8202 -1.2705 21 6 8.3141 3.5297 -0.6954 22 6 3.5846 -1.1958 -0.0002 23 8 4.2658 -2.3717 -0.0007 24 6 2.1971 -1.1965 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5142 28 1 1.6565 2.1325 -0.0004 29 1 4.1175 2.1383 0.0010 30 1 5.9181 0.7930 2.0153 31 1 5.9237 -0.9844 1.9173 32 1 7.3763 -0.0636 1.4594 33 1 5.6242 1.5810 -1.3107 34 1 8.2830 0.6787 -0.4110 35 1 7.5581 0.3408 -2.0010 36 1 9.3394 0.5660 -4.7727 37 1 10.0898 2.1476 -0.6108 38 1 10.1476 3.3683 -1.9919 39 1 8.1126 4.5445 -1.0384 40 1 8.0541 3.3240 0.3431 41 1 4.4630 -2.7117 -0.8842 42 1 1.6571 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:09 Heat of formation + Delta-G solvation = -3.691727 kcal Electronic energy + Delta-G solvation = -21377.929345 eV Core-core repulsion = 18323.295491 eV Total energy + Delta-G solvation = -3054.633854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01373 -37.14040 -36.76828 -35.34926 -32.03413 -31.89670 -29.93333 -29.40986 -26.70896 -25.68076 -24.29504 -22.66775 -21.85607 -20.95970 -19.81441 -19.04881 -17.85441 -16.34230 -16.06108 -15.61239 -15.10846 -14.69070 -14.43382 -13.91974 -13.83997 -13.57354 -13.55172 -13.24286 -12.69032 -12.60521 -12.11197 -11.89641 -11.72335 -11.59125 -11.42604 -11.31591 -11.20173 -10.96978 -10.86526 -10.61346 -10.40572 -10.18442 -10.06913 -9.30204 -8.81035 -8.67187 -8.46739 -8.30906 -8.05896 -7.52883 -6.03433 -4.08202 1.32752 1.43181 3.26295 3.33882 3.37170 3.68649 4.29183 4.38594 4.71992 4.84028 4.98902 5.05138 5.21844 5.31040 5.37304 5.47674 5.59837 5.61915 5.76812 5.78491 5.85761 5.99523 6.12343 6.21626 6.24040 6.27756 6.46159 6.52598 6.60107 6.62324 6.63439 6.66909 6.91202 6.93518 6.97739 7.00730 7.18624 7.53851 7.59568 7.72335 7.89275 7.99600 8.24269 8.50678 8.93641 9.55593 11.04089 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.005127 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.176342 B = 5460.428130 C = 6054.770068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.106 4.106 6 C 0.127 3.873 7 H 0.047 0.953 8 C -0.126 4.126 9 N -0.680 5.680 10 C 0.107 3.893 11 C 0.053 3.947 12 C -0.493 4.493 13 H 0.058 0.942 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.885 3.115 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.178 4.178 21 C -0.192 4.192 22 C 0.109 3.891 23 O -0.497 6.497 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.343 0.657 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.388 0.612 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 -4.282 7.507 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.107 4.107 6 C 0.017 3.983 7 H 0.065 0.935 8 C -0.184 4.184 9 N -0.312 5.312 10 C -0.022 4.022 11 C 0.052 3.948 12 C -0.531 4.531 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.516 5.516 16 Si 0.713 3.287 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.216 4.216 21 C -0.230 4.230 22 C 0.064 3.936 23 O -0.307 6.307 24 C -0.169 4.169 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.244 0.756 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.557 -4.171 8.603 15.782 hybrid contribution -0.288 -0.521 -2.328 2.403 sum -12.844 -4.692 6.274 15.045 Atomic orbital electron populations 1.20765 0.91269 1.02643 1.02149 1.19733 0.95871 0.92761 0.99836 1.21073 0.94304 0.97391 1.02037 1.21111 0.93578 0.98413 0.97154 1.20446 0.96488 0.92599 1.01178 1.20237 0.88339 0.93172 0.96534 0.93540 1.21685 1.00869 1.00916 0.94947 1.60702 1.05382 1.27472 1.37628 1.21466 0.87313 0.98036 0.95342 1.18752 0.93819 0.89861 0.92359 1.20548 1.30910 1.12077 0.89515 0.92341 1.24983 0.94918 0.94751 0.98655 1.69987 1.28730 1.22756 1.30171 0.86698 0.79789 0.77602 0.84604 1.20678 1.21294 1.19794 1.22714 0.92280 1.04023 1.02601 1.22714 1.04779 0.97546 0.97944 1.18286 0.89601 0.84927 1.00802 1.84799 1.76379 1.36143 1.33390 1.21167 0.93233 0.98120 1.04343 0.91320 0.91483 0.91770 0.85970 0.84106 0.92437 0.93051 0.92562 0.83771 0.94176 0.93762 0.93091 0.92191 0.90658 0.91221 0.91102 0.75638 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.97 5.88 -104.64 -0.62 -1.59 16 3 C -0.13 -1.64 9.70 -39.56 -0.38 -2.02 16 4 C -0.08 -1.22 8.85 -39.60 -0.35 -1.58 16 5 C -0.11 -1.63 4.92 -104.47 -0.51 -2.15 16 6 C 0.13 2.14 2.58 -68.86 -0.18 1.97 16 7 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 8 C -0.13 -2.00 9.40 37.16 0.35 -1.65 16 9 N -0.68 -13.01 5.46 -107.95 -0.59 -13.60 16 10 C 0.11 2.40 5.28 -3.82 -0.02 2.38 16 11 C 0.05 1.29 1.49 -155.66 -0.23 1.05 16 12 C -0.49 -13.14 8.82 -34.44 -0.30 -13.44 16 13 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 14 C 0.07 1.88 5.24 -17.82 -0.09 1.78 16 15 N -0.88 -24.54 12.57 55.43 0.70 -23.85 16 16 Si 0.89 20.78 29.55 -169.99 -5.02 15.76 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.18 -4.21 9.88 -26.74 -0.26 -4.47 16 21 C -0.19 -4.26 9.85 -26.73 -0.26 -4.52 16 22 C 0.11 1.55 6.68 -39.22 -0.26 1.29 16 23 O -0.50 -6.60 12.60 -19.42 -0.24 -6.84 16 24 C -0.15 -1.90 9.64 -39.44 -0.38 -2.28 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 2.09 7.05 -52.49 -0.37 1.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.91 7.46 -51.93 -0.39 0.52 16 33 H 0.34 6.81 7.35 -39.30 -0.29 6.52 16 34 H 0.04 0.89 7.17 -51.93 -0.37 0.52 16 35 H 0.04 1.12 7.25 -51.93 -0.38 0.74 16 36 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 37 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 38 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.39 3.71 9.06 45.56 0.41 4.12 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -28.80 347.71 -9.02 -37.82 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.95 Total: 11.32 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.15 Total: -25.84 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.11 Total: -37.45 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.24 Total: -6.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.80 -9.02 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.125 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds