Wall clock time and date at job start Mon Mar 30 2020 01:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.96995 * 2 1 4 4 C 1.38243 * 120.10869 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05909 * 359.76371 * 4 3 2 6 6 C 1.50697 * 120.03057 * 180.25179 * 5 4 3 7 7 H 1.09000 * 109.47084 * 213.27834 * 6 5 4 8 8 C 1.53003 * 109.46760 * 93.27686 * 6 5 4 9 9 N 1.46904 * 109.46989 * 333.28077 * 6 5 4 10 10 C 1.46906 * 110.99500 * 206.04310 * 9 6 5 11 11 C 1.52996 * 109.46837 * 185.14295 * 10 9 6 12 12 C 1.50704 * 115.54645 * 275.59031 * 11 10 9 13 13 H 1.08002 * 120.00015 * 114.48250 * 12 11 10 14 14 C 1.37878 * 120.00252 * 294.47490 * 12 11 10 15 15 N 1.31517 * 119.99560 * 353.14523 * 14 12 11 16 16 Si 1.86794 * 120.00155 * 173.13581 * 14 12 11 17 17 H 1.48503 * 109.47014 * 90.00322 * 16 14 12 18 18 H 1.48502 * 109.47378 * 210.00365 * 16 14 12 19 19 H 1.48506 * 109.47371 * 330.00899 * 16 14 12 20 20 C 1.52994 * 117.50056 * 129.88304 * 11 10 9 21 21 C 1.52998 * 60.00270 * 252.50426 * 20 11 10 22 22 C 1.38715 * 119.93741 * 0.53403 * 5 4 3 23 23 O 1.35897 * 120.05151 * 179.71626 * 22 5 4 24 24 C 1.38123 * 119.97423 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47338 * 269.97755 * 1 2 3 26 26 H 1.09002 * 109.46983 * 29.97895 * 1 2 3 27 27 H 1.08996 * 109.46605 * 149.97437 * 1 2 3 28 28 H 1.07997 * 119.94563 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.96880 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47443 * 299.99928 * 8 6 5 31 31 H 1.09005 * 109.46900 * 60.00234 * 8 6 5 32 32 H 1.08997 * 109.47196 * 179.97438 * 8 6 5 33 33 H 1.00893 * 111.00048 * 329.99872 * 9 6 5 34 34 H 1.09003 * 109.47195 * 305.13970 * 10 9 6 35 35 H 1.08992 * 109.47220 * 65.13870 * 10 9 6 36 36 H 0.97000 * 119.99413 * 185.00402 * 15 14 12 37 37 H 1.09000 * 117.50402 * 0.02562 * 20 11 10 38 38 H 1.09004 * 117.49719 * 145.01802 * 20 11 10 39 39 H 1.08996 * 117.50077 * 252.50653 * 21 20 11 40 40 H 1.09005 * 117.51345 * 107.47641 * 21 20 11 41 41 H 0.96700 * 114.00442 * 269.72518 * 23 22 5 42 42 H 1.07995 * 120.02309 * 0.02761 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2753 0.0072 0.0060 6 6 5.7822 0.0116 0.0123 7 1 6.1504 -0.8477 -0.5482 8 6 6.2863 -0.0663 1.4548 9 7 6.2708 1.2488 -0.6110 10 6 7.6111 1.0571 -1.1813 11 6 8.1381 2.3943 -1.7058 12 6 7.6987 2.7646 -3.0990 13 1 7.0605 3.6220 -3.2539 14 6 8.1117 2.0091 -4.1758 15 7 8.9945 1.0492 -4.0056 16 14 7.4171 2.3485 -5.8762 17 1 8.2691 3.3487 -6.5683 18 1 7.3946 1.0888 -6.6624 19 1 6.0354 2.8780 -5.7500 20 6 9.5416 2.8202 -1.2705 21 6 8.3141 3.5297 -0.6954 22 6 3.5846 -1.1958 -0.0002 23 8 4.2658 -2.3717 -0.0007 24 6 2.1971 -1.1965 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3632 -0.8897 -0.5142 28 1 1.6565 2.1325 -0.0004 29 1 4.1175 2.1383 0.0010 30 1 5.9181 0.7930 2.0153 31 1 5.9237 -0.9844 1.9173 32 1 7.3763 -0.0636 1.4594 33 1 5.6242 1.5810 -1.3107 34 1 8.2830 0.6787 -0.4110 35 1 7.5581 0.3408 -2.0010 36 1 9.3394 0.5660 -4.7727 37 1 10.0898 2.1476 -0.6108 38 1 10.1476 3.3683 -1.9919 39 1 8.1126 4.5445 -1.0384 40 1 8.0541 3.3240 0.3431 41 1 4.4630 -2.7117 -0.8842 42 1 1.6571 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797587335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:09 Heat of formation + Delta-G solvation = -20.518446 kcal Electronic energy + Delta-G solvation = -21378.659007 eV Core-core repulsion = 18323.295491 eV Total energy + Delta-G solvation = -3055.363515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07929 -38.85054 -37.76582 -36.83660 -34.04373 -33.08047 -31.10393 -30.58298 -27.78329 -27.62032 -25.93599 -23.72387 -23.07527 -22.73010 -21.04967 -20.94629 -18.91371 -18.05824 -17.29403 -16.98416 -16.63861 -16.15081 -15.86629 -15.58021 -14.99887 -14.83266 -14.72149 -14.38775 -14.30003 -13.49889 -13.46561 -13.32800 -13.27912 -12.91233 -12.87378 -12.79158 -12.68257 -12.40842 -12.33101 -12.28245 -11.96365 -11.87828 -11.35565 -11.10679 -10.79372 -10.42308 -9.95936 -9.68961 -9.35133 -9.16483 -8.09117 -6.19339 0.30791 0.40876 1.39397 1.42013 1.50863 2.42083 2.68339 3.14237 3.24708 3.32533 3.72975 3.77365 4.03322 4.08631 4.27665 4.34992 4.45828 4.49661 4.54198 4.67514 4.76770 4.78428 4.84408 4.86873 4.92789 4.99415 5.04288 5.07030 5.08390 5.17500 5.27789 5.29551 5.34729 5.43068 5.58741 5.65208 5.65704 5.68434 5.86827 5.98052 6.35375 6.46597 6.60565 6.79724 6.89714 7.47090 8.97875 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.005127 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.176342 B = 5460.428130 C = 6054.770068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.129 4.129 6 C 0.130 3.870 7 H 0.032 0.968 8 C -0.118 4.118 9 N -0.670 5.670 10 C 0.125 3.875 11 C 0.029 3.971 12 C -0.505 4.505 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.907 5.907 16 Si 0.945 3.055 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.185 4.185 21 C -0.167 4.167 22 C 0.100 3.900 23 O -0.507 6.507 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.132 0.868 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.339 0.661 34 H 0.039 0.961 35 H 0.010 0.990 36 H 0.259 0.741 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.402 0.598 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 -4.184 7.864 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.021 3.979 7 H 0.050 0.950 8 C -0.176 4.176 9 N -0.301 5.301 10 C -0.004 4.004 11 C 0.028 3.972 12 C -0.543 4.543 13 H 0.070 0.930 14 C -0.174 4.174 15 N -0.545 5.545 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.223 4.223 21 C -0.204 4.204 22 C 0.055 3.945 23 O -0.319 6.319 24 C -0.173 4.173 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.162 0.838 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.157 0.843 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.260 0.740 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.789 -4.069 8.965 17.766 hybrid contribution 0.364 -0.565 -2.407 2.499 sum -14.426 -4.634 6.557 16.510 Atomic orbital electron populations 1.20839 0.88689 1.03835 1.03326 1.20145 0.97725 0.92072 0.97798 1.21338 0.93573 0.98833 1.01419 1.21123 0.94640 0.97698 0.97968 1.20346 0.95311 0.93695 1.03624 1.20196 0.89924 0.91349 0.96466 0.94979 1.21610 1.00255 1.01420 0.94354 1.60678 1.03904 1.28793 1.36716 1.21125 0.89022 0.96226 0.94068 1.18877 0.94430 0.91472 0.92386 1.20785 1.30706 1.11869 0.90937 0.92990 1.25629 0.95121 0.94645 1.01956 1.70096 1.29824 1.23617 1.30970 0.85761 0.79302 0.77339 0.80533 1.20415 1.21200 1.19137 1.22667 0.92313 1.04564 1.02759 1.22676 1.02658 0.96893 0.98176 1.18431 0.90404 0.84682 1.00942 1.84749 1.76487 1.35850 1.34785 1.21428 0.92596 0.99414 1.03844 0.89998 0.90357 0.90603 0.83825 0.85002 0.92222 0.92207 0.93345 0.84270 0.94272 0.97139 0.93221 0.91356 0.92335 0.90941 0.89454 0.74026 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 2 C -0.08 -1.63 5.88 -19.88 -0.12 -1.75 16 3 C -0.13 -3.11 9.70 22.28 0.22 -2.89 16 4 C -0.10 -2.72 8.85 22.25 0.20 -2.52 16 5 C -0.13 -3.92 4.92 -19.77 -0.10 -4.01 16 6 C 0.13 4.43 2.58 44.17 0.11 4.54 16 7 H 0.03 1.18 7.33 -2.39 -0.02 1.16 16 8 C -0.12 -3.72 9.40 71.98 0.68 -3.05 16 9 N -0.67 -25.89 5.46 -495.44 -2.71 -28.60 16 10 C 0.12 5.72 5.28 86.30 0.46 6.18 16 11 C 0.03 1.43 1.49 -52.93 -0.08 1.35 16 12 C -0.51 -27.17 8.82 25.60 0.23 -26.94 16 13 H 0.05 2.80 7.82 -2.91 -0.02 2.77 16 14 C 0.03 1.44 5.24 84.65 0.44 1.89 16 15 N -0.91 -51.47 12.57 21.45 0.27 -51.20 16 16 Si 0.94 42.85 29.55 68.60 2.03 44.87 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 C -0.18 -8.77 9.88 30.59 0.30 -8.47 16 21 C -0.17 -7.25 9.85 30.59 0.30 -6.95 16 22 C 0.10 2.76 6.68 22.51 0.15 2.91 16 23 O -0.51 -13.10 12.60 -92.39 -1.16 -14.26 16 24 C -0.15 -3.58 9.64 22.36 0.22 -3.37 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 28 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 29 H 0.13 3.88 7.05 -2.91 -0.02 3.86 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.05 1.56 7.46 -2.39 -0.02 1.54 16 33 H 0.34 13.64 7.35 -89.70 -0.66 12.98 16 34 H 0.04 1.77 7.17 -2.39 -0.02 1.75 16 35 H 0.01 0.54 7.25 -2.39 -0.02 0.53 16 36 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 37 H 0.07 3.08 8.06 -2.39 -0.02 3.06 16 38 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 39 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 41 H 0.40 7.52 9.06 -74.06 -0.67 6.84 16 42 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -60.98 347.71 1.83 -59.16 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.32 Total: 33.94 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.72 Total: -43.91 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.44 Total: -79.80 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.16 Total: -14.26 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.98 1.83 -59.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.638 kcal (2) G-P(sol) polarization free energy of solvation -60.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds