Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.52992 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47406 * 59.99550 * 3 2 1 6 6 C 1.34780 * 119.99550 * 59.99614 * 5 3 2 7 7 O 1.21274 * 120.00259 * 0.02562 * 6 5 3 8 8 C 1.50697 * 119.99723 * 179.97438 * 6 5 3 9 9 C 1.53006 * 109.47107 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47041 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99952 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99576 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99635 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00324 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46938 * 90.00167 * 14 12 10 16 16 H 1.48503 * 109.47519 * 210.00136 * 14 12 10 17 17 H 1.48498 * 109.47311 * 330.00498 * 14 12 10 18 18 C 1.50706 * 109.46826 * 299.99881 * 3 2 1 19 19 C 1.38237 * 119.99744 * 150.00542 * 18 3 2 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 3 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00223 * 330.01753 * 18 3 2 24 24 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47611 * 300.00107 * 1 2 3 26 26 H 1.09001 * 109.47186 * 60.00133 * 1 2 3 27 27 H 1.08996 * 109.47173 * 239.99736 * 2 1 3 28 28 H 1.09001 * 109.46660 * 119.99862 * 2 1 3 29 29 H 1.09000 * 109.47055 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47313 * 299.99349 * 4 3 2 31 31 H 1.09000 * 109.47547 * 59.99968 * 4 3 2 32 32 H 0.96996 * 120.00154 * 240.00318 * 5 3 2 33 33 H 1.09009 * 109.47428 * 300.00432 * 8 6 5 34 34 H 1.09001 * 109.47068 * 60.00404 * 8 6 5 35 35 H 1.09000 * 109.46902 * 299.99867 * 9 8 6 36 36 H 1.08998 * 109.46904 * 59.99898 * 9 8 6 37 37 H 0.96998 * 119.99567 * 179.97438 * 13 12 10 38 38 H 1.08005 * 120.00088 * 359.97438 * 19 18 3 39 39 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 42 42 H 1.07998 * 119.99975 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 1.5516 2.1332 1.1961 6 6 1.8771 1.6727 2.4202 7 8 2.5746 0.6869 2.5316 8 6 1.3752 2.3835 3.6506 9 6 1.8855 1.6625 4.9000 10 6 1.3831 2.3729 6.1304 11 1 0.7623 3.2511 6.0312 12 6 1.7160 1.9018 7.3826 13 7 1.2779 2.5221 8.4564 14 14 2.7891 0.3825 7.5541 15 1 4.2171 0.7877 7.5995 16 1 2.4376 -0.3331 8.8069 17 1 2.5660 -0.5149 6.3922 18 6 1.5376 2.1529 -1.2305 19 6 1.3072 3.5155 -1.1964 20 6 0.8459 4.1670 -2.3249 21 6 0.6160 3.4561 -3.4879 22 6 0.8417 2.0927 -3.5207 23 6 1.3069 1.4419 -2.3933 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9332 2.4702 0.0002 30 1 3.9329 0.9289 0.8909 31 1 3.9337 0.9285 -0.8891 32 1 0.9939 2.9218 1.1070 33 1 1.7389 3.4111 3.6505 34 1 0.2852 2.3839 3.6507 35 1 1.5220 0.6349 4.9003 36 1 2.9755 1.6624 4.8996 37 1 1.5118 2.1904 9.3374 38 1 1.4869 4.0709 -0.2877 39 1 0.6656 5.2314 -2.2981 40 1 0.2560 3.9652 -4.3698 41 1 0.6579 1.5365 -4.4281 42 1 1.4863 0.3772 -2.4199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812983833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -25.118731 kcal Electronic energy + Delta-G solvation = -21411.669545 eV Core-core repulsion = 18356.106546 eV Total energy + Delta-G solvation = -3055.562999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65871 -38.88111 -36.20260 -33.46313 -32.66786 -31.37082 -30.88499 -30.58173 -29.31082 -26.10969 -24.07618 -23.30348 -22.40193 -21.44188 -19.88934 -19.23727 -17.84568 -16.89336 -15.96273 -15.76572 -15.20862 -15.13818 -14.53662 -14.18676 -14.13535 -14.04259 -13.49922 -13.28082 -13.25403 -12.66697 -12.57962 -12.53528 -12.20211 -12.08354 -11.68414 -11.40162 -11.30762 -11.15046 -10.97750 -10.81234 -10.65564 -10.12906 -10.00682 -9.75731 -9.17903 -9.15483 -9.07180 -8.98859 -8.69944 -8.49451 -6.01941 -4.00521 1.11490 1.17462 3.15321 3.38562 3.40776 3.45303 3.55988 3.62138 4.38004 4.51845 4.62743 4.76313 4.87276 4.91886 5.10334 5.19950 5.31555 5.33669 5.35443 5.43083 5.63814 5.68730 5.72652 5.77684 5.80758 5.92296 6.02054 6.09593 6.11511 6.18152 6.25769 6.28722 6.31760 6.36062 6.45217 6.71131 6.76192 6.80226 7.38209 7.45587 7.78815 7.85587 8.51814 8.70725 9.01448 9.61212 11.10988 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.003876 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.302269 B = 7221.492563 C = 7579.896022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.217 3.783 4 C -0.158 4.158 5 N -0.733 5.733 6 C 0.514 3.486 7 O -0.535 6.535 8 C -0.124 4.124 9 C 0.003 3.997 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 C -0.074 4.074 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.397 0.603 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 0.316 -25.532 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.131 3.869 4 C -0.216 4.216 5 N -0.388 5.388 6 C 0.303 3.697 7 O -0.411 6.411 8 C -0.163 4.163 9 C -0.035 4.035 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.075 4.075 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.127 4.127 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.557 -0.412 -25.233 25.242 hybrid contribution 0.211 -0.215 0.102 0.318 sum -0.346 -0.628 -25.130 25.140 Atomic orbital electron populations 1.21773 0.95577 1.01352 1.01989 1.21997 0.96433 0.95311 1.03636 1.19082 0.94009 0.91695 0.82092 1.22205 0.93436 1.02422 1.03570 1.46397 1.54862 1.32353 1.05146 1.21429 0.79288 0.84468 0.84494 1.90578 1.37469 1.26347 1.86726 1.21681 1.01854 1.00447 0.92365 1.19350 0.96600 0.96168 0.91360 1.21126 1.32415 1.13495 0.89205 0.91002 1.24977 0.95644 0.96862 0.95799 1.69919 1.45920 1.40586 0.97897 0.86787 0.81038 0.83967 0.77698 1.20277 1.21494 1.18513 1.19908 0.98779 0.93837 0.94956 1.21017 0.99817 0.93984 0.98788 1.21137 0.99282 0.99947 0.93021 1.21156 1.00588 0.94470 0.98102 1.21138 0.99663 0.94724 0.98205 1.21074 0.99178 1.00133 0.92350 0.93013 0.92490 0.92806 0.91570 0.88978 0.92621 0.89577 0.92212 0.76766 0.89773 0.89750 0.95839 0.96289 0.92747 0.85828 0.85982 0.86237 0.86090 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.43 37.16 0.35 -1.42 16 2 C -0.14 -1.70 4.27 -26.73 -0.11 -1.81 16 3 C 0.22 2.66 0.59 -132.97 -0.08 2.58 16 4 C -0.16 -2.03 8.38 37.15 0.31 -1.72 16 5 N -0.73 -9.79 4.09 -48.69 -0.20 -9.99 16 6 C 0.51 9.04 7.25 -10.99 -0.08 8.96 16 7 O -0.54 -11.07 12.19 5.56 0.07 -11.01 16 8 C -0.12 -2.37 5.64 -27.88 -0.16 -2.53 16 9 C 0.00 0.08 3.33 -27.88 -0.09 -0.02 16 10 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -28.14 13.96 55.43 0.77 -27.36 16 14 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 18 C -0.07 -0.78 4.07 -104.62 -0.43 -1.21 16 19 C -0.12 -1.15 8.96 -39.58 -0.35 -1.50 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.13 -1.02 10.05 -39.58 -0.40 -1.41 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.11 -1.03 7.77 -39.58 -0.31 -1.34 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.76 7.60 -51.93 -0.39 0.36 16 26 H 0.05 0.58 6.17 -51.93 -0.32 0.26 16 27 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16 28 H 0.09 1.44 6.17 -51.93 -0.32 1.12 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.34 6.16 -51.93 -0.32 1.02 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 4.44 6.67 -40.82 -0.27 4.17 16 33 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.02 0.61 7.15 -51.93 -0.37 0.23 16 36 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.12 1.11 6.71 -52.48 -0.35 0.76 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.13 1.07 6.16 -52.49 -0.32 0.75 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.85 331.45 -7.98 -40.83 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.37 Total: 2.20 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.57 Total: -17.64 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.57 Total: -37.35 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.85 -7.98 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812983833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.708 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds