Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35943 * 117.00030 * 2 1 4 4 C 1.38817 * 119.96366 * 0.02562 * 3 2 1 5 5 C 1.37914 * 119.86723 * 179.91586 * 4 3 2 6 6 C 1.39254 * 120.09328 * 0.02562 * 5 4 3 7 7 C 1.38789 * 120.08262 * 0.10338 * 6 5 4 8 8 C 1.38407 * 119.60631 * 359.82214 * 7 6 5 9 9 C 1.50604 * 121.49100 * 179.70862 * 7 6 5 10 10 C 1.52860 * 110.47936 * 20.57963 * 9 7 6 11 11 H 1.09002 * 109.56961 * 68.57981 * 10 9 7 12 12 C 1.52998 * 109.57630 * 188.95817 * 10 9 7 13 13 C 1.53001 * 109.47308 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47122 * 300.00292 * 12 10 9 15 15 C 1.53426 * 108.84822 * 308.76907 * 10 9 7 16 16 N 1.39656 * 119.08732 * 180.32745 * 6 5 4 17 17 C 1.36837 * 120.52506 * 13.41687 * 16 6 5 18 18 H 1.08001 * 120.00137 * 27.59898 * 17 16 6 19 19 C 1.38767 * 119.99916 * 207.60550 * 17 16 6 20 20 N 1.31616 * 119.99592 * 12.12494 * 19 17 16 21 21 Si 1.86794 * 119.99799 * 192.12941 * 19 17 16 22 22 H 1.48500 * 109.47563 * 59.99922 * 21 19 17 23 23 H 1.48505 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47319 * 299.99405 * 21 19 17 25 25 H 1.09005 * 109.47223 * 299.99852 * 1 2 3 26 26 H 1.08999 * 109.46966 * 60.00046 * 1 2 3 27 27 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.06699 * 0.18014 * 4 3 2 29 29 H 1.08003 * 119.95013 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.86117 * 180.12472 * 8 7 6 31 31 H 1.08994 * 109.30499 * 140.89155 * 9 7 6 32 32 H 1.09002 * 109.30102 * 260.48063 * 9 7 6 33 33 H 1.09001 * 109.47028 * 60.00113 * 12 10 9 34 34 H 1.09001 * 109.47221 * 59.99940 * 13 12 10 35 35 H 1.08998 * 109.46943 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.46825 * 300.00102 * 13 12 10 37 37 H 1.09005 * 109.47091 * 59.99928 * 14 12 10 38 38 H 1.08998 * 109.47337 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.47022 * 299.99824 * 14 12 10 40 40 H 1.08998 * 109.79520 * 182.77857 * 15 10 9 41 41 H 1.09001 * 109.79581 * 303.56970 * 15 10 9 42 42 H 0.97007 * 119.99617 * 184.98624 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2894 2.3750 0.0005 5 6 1.9176 3.6028 0.0023 6 6 3.3082 3.6756 0.0030 7 6 4.0657 2.5126 -0.0003 8 6 3.4306 1.2829 -0.0004 9 6 5.5712 2.5544 -0.0062 10 6 6.0706 3.9092 0.4956 11 1 5.8482 4.0097 1.5579 12 6 7.5807 4.0132 0.2732 13 6 8.0781 5.3697 0.7767 14 6 8.2876 2.8944 1.0410 15 6 5.3581 5.0206 -0.2862 16 7 3.9224 4.9298 0.0117 17 6 3.1983 6.0563 0.2929 18 1 2.3210 5.9919 0.9195 19 6 3.5912 7.2814 -0.2271 20 7 4.5051 7.3322 -1.1728 21 14 2.8230 8.8582 0.4153 22 1 3.0922 8.9832 1.8703 23 1 3.4100 10.0211 -0.2978 24 1 1.3565 8.8243 0.1843 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2108 2.3191 0.0039 29 1 1.3301 4.5090 0.0023 30 1 4.0160 0.3753 -0.0009 31 1 5.9560 1.7663 0.6410 32 1 5.9320 2.3945 -1.0222 33 1 7.7988 3.9179 -0.7905 34 1 7.8601 5.4646 1.8405 35 1 9.1539 5.4440 0.6179 36 1 7.5746 6.1670 0.2301 37 1 7.9333 1.9278 0.6826 38 1 9.3634 2.9682 0.8822 39 1 8.0695 2.9897 2.1047 40 1 5.7389 5.9933 0.0251 41 1 5.5235 4.8844 -1.3549 42 1 4.8323 8.1902 -1.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817298859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = -18.722703 kcal Electronic energy + Delta-G solvation = -21982.238335 eV Core-core repulsion = 18926.952689 eV Total energy + Delta-G solvation = -3055.285646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.58939 -38.25647 -36.12440 -34.81309 -32.18820 -31.46860 -28.79110 -28.55974 -27.11834 -26.34462 -25.38921 -23.25159 -22.32760 -21.18533 -19.76859 -18.72841 -17.30368 -16.89777 -15.92180 -15.38169 -15.05381 -14.57850 -14.23777 -14.02865 -13.69357 -13.50683 -13.09840 -12.84611 -12.63289 -12.32678 -12.15447 -12.08970 -11.81843 -11.61920 -11.41331 -11.17198 -11.09853 -11.05429 -10.96811 -10.63063 -10.43104 -10.23851 -10.15658 -9.88713 -9.64180 -9.43534 -9.01324 -8.25093 -7.85047 -6.48367 -6.14463 -3.72310 2.31202 2.64299 3.17681 3.19666 3.21458 4.04574 4.09471 4.68056 4.92821 5.07366 5.24405 5.35351 5.39187 5.46784 5.53581 5.66911 5.79647 5.81446 5.85515 5.93190 5.95814 6.02751 6.10766 6.17073 6.21278 6.35332 6.42391 6.48635 6.49832 6.60662 6.65356 6.77928 6.82834 7.01573 7.04799 7.17836 7.34433 7.37261 7.43598 7.55730 7.66569 8.03657 8.34467 8.70465 9.34306 9.73076 10.68943 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.007574 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.169863 B = 3696.174423 C = 5710.772699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.332 6.332 3 C 0.003 3.997 4 C -0.150 4.150 5 C -0.174 4.174 6 C 0.197 3.803 7 C -0.166 4.166 8 C -0.092 4.092 9 C -0.052 4.052 10 C -0.108 4.108 11 H 0.068 0.932 12 C -0.085 4.085 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.154 3.846 16 N -0.454 5.454 17 C -0.296 4.296 18 H 0.088 0.912 19 C 0.026 3.974 20 N -0.877 5.877 21 Si 0.920 3.080 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.274 1.274 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -6.881 2.560 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C -0.043 4.043 4 C -0.169 4.169 5 C -0.198 4.198 6 C 0.082 3.918 7 C -0.173 4.173 8 C -0.111 4.111 9 C -0.089 4.089 10 C -0.127 4.127 11 H 0.086 0.914 12 C -0.104 4.104 13 C -0.206 4.206 14 C -0.203 4.203 15 C 0.030 3.970 16 N -0.143 5.143 17 C -0.425 4.425 18 H 0.106 0.894 19 C -0.177 4.177 20 N -0.514 5.514 21 Si 0.747 3.253 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.199 1.199 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.067 -6.582 2.390 7.301 hybrid contribution -0.727 1.018 0.210 1.268 sum 1.340 -5.564 2.599 6.286 Atomic orbital electron populations 1.22759 0.80509 1.02116 1.00541 1.85911 1.19541 1.28078 1.91212 1.18336 0.91889 0.83230 1.10830 1.20775 0.98164 0.92303 1.05707 1.20430 0.93162 0.96649 1.09569 1.17798 0.91291 0.85970 0.96699 1.18809 0.94451 0.91107 1.12894 1.19747 0.90863 0.96473 1.04017 1.20211 0.91517 0.96968 1.00226 1.21687 0.93738 0.96507 1.00803 0.91395 1.21026 0.94594 0.94923 0.99826 1.21884 0.99891 0.97555 1.01241 1.21876 0.99384 0.98751 1.00283 1.21489 0.80579 0.97741 0.97149 1.42584 1.06102 1.01904 1.63748 1.19442 1.11520 0.84827 1.26702 0.89395 1.25309 0.98056 0.99580 0.94786 1.70059 1.30061 1.26245 1.25042 0.86095 0.79384 0.81025 0.78826 1.20036 1.20885 1.19902 0.93716 0.93676 0.89723 0.87411 0.86226 0.87269 0.92056 0.92291 0.91431 0.93076 0.93540 0.91568 0.92583 0.93382 0.92996 0.88655 0.93575 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.81 101.05 0.99 1.48 16 2 O -0.33 -6.00 10.50 -19.56 -0.21 -6.20 16 3 C 0.00 0.06 6.68 -39.22 -0.26 -0.20 16 4 C -0.15 -3.00 9.03 -39.49 -0.36 -3.35 16 5 C -0.17 -3.92 9.19 -39.32 -0.36 -4.28 16 6 C 0.20 4.62 6.33 -83.71 -0.53 4.09 16 7 C -0.17 -3.51 5.76 -104.40 -0.60 -4.11 16 8 C -0.09 -1.83 9.60 -39.37 -0.38 -2.21 16 9 C -0.05 -0.95 4.47 -28.00 -0.13 -1.08 16 10 C -0.11 -2.01 1.94 -90.47 -0.18 -2.18 16 11 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 12 C -0.08 -1.30 2.49 -90.62 -0.23 -1.53 16 13 C -0.15 -2.24 8.87 37.16 0.33 -1.91 16 14 C -0.15 -1.90 8.85 37.16 0.33 -1.57 16 15 C 0.15 3.48 3.96 -3.60 -0.01 3.47 16 16 N -0.45 -11.26 2.98 -112.52 -0.34 -11.60 16 17 C -0.30 -7.67 8.63 -15.12 -0.13 -7.80 16 18 H 0.09 2.24 6.90 -52.49 -0.36 1.88 16 19 C 0.03 0.66 5.03 -17.45 -0.09 0.58 16 20 N -0.88 -22.97 11.03 55.49 0.61 -22.36 16 21 Si 0.92 19.87 29.57 -169.99 -5.03 14.84 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 25 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.11 1.86 6.30 -52.49 -0.33 1.53 16 29 H 0.12 2.72 6.60 -52.48 -0.35 2.38 16 30 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.06 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.12 6.40 -51.93 -0.33 0.79 16 37 H 0.06 0.70 6.64 -51.93 -0.34 0.36 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 2.27 4.63 -51.93 -0.24 2.03 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -27.50 325.34 -8.12 -35.62 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.47 Total: 5.39 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -1.60 Total: -20.60 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.28 Total: -33.96 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.21 Total: -6.20 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.50 -8.12 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817298859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.898 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds