Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35943 * 117.00030 * 2 1 4 4 C 1.38817 * 119.96366 * 0.02562 * 3 2 1 5 5 C 1.37914 * 119.86723 * 179.91586 * 4 3 2 6 6 C 1.39254 * 120.09328 * 0.02562 * 5 4 3 7 7 C 1.38789 * 120.08262 * 0.10338 * 6 5 4 8 8 C 1.38407 * 119.60631 * 359.82214 * 7 6 5 9 9 C 1.50604 * 121.49100 * 179.70862 * 7 6 5 10 10 C 1.52860 * 110.47936 * 20.57963 * 9 7 6 11 11 H 1.09002 * 109.56961 * 68.57981 * 10 9 7 12 12 C 1.52998 * 109.57630 * 188.95817 * 10 9 7 13 13 C 1.53001 * 109.47308 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47122 * 300.00292 * 12 10 9 15 15 C 1.53426 * 108.84822 * 308.76907 * 10 9 7 16 16 N 1.39656 * 119.08732 * 180.32745 * 6 5 4 17 17 C 1.36837 * 120.52506 * 13.41687 * 16 6 5 18 18 H 1.08001 * 120.00137 * 27.59898 * 17 16 6 19 19 C 1.38767 * 119.99916 * 207.60550 * 17 16 6 20 20 N 1.31616 * 119.99592 * 12.12494 * 19 17 16 21 21 Si 1.86794 * 119.99799 * 192.12941 * 19 17 16 22 22 H 1.48500 * 109.47563 * 59.99922 * 21 19 17 23 23 H 1.48505 * 109.46940 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47319 * 299.99405 * 21 19 17 25 25 H 1.09005 * 109.47223 * 299.99852 * 1 2 3 26 26 H 1.08999 * 109.46966 * 60.00046 * 1 2 3 27 27 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.06699 * 0.18014 * 4 3 2 29 29 H 1.08003 * 119.95013 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.86117 * 180.12472 * 8 7 6 31 31 H 1.08994 * 109.30499 * 140.89155 * 9 7 6 32 32 H 1.09002 * 109.30102 * 260.48063 * 9 7 6 33 33 H 1.09001 * 109.47028 * 60.00113 * 12 10 9 34 34 H 1.09001 * 109.47221 * 59.99940 * 13 12 10 35 35 H 1.08998 * 109.46943 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.46825 * 300.00102 * 13 12 10 37 37 H 1.09005 * 109.47091 * 59.99928 * 14 12 10 38 38 H 1.08998 * 109.47337 * 179.97438 * 14 12 10 39 39 H 1.09001 * 109.47022 * 299.99824 * 14 12 10 40 40 H 1.08998 * 109.79520 * 182.77857 * 15 10 9 41 41 H 1.09001 * 109.79581 * 303.56970 * 15 10 9 42 42 H 0.97007 * 119.99617 * 184.98624 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2894 2.3750 0.0005 5 6 1.9176 3.6028 0.0023 6 6 3.3082 3.6756 0.0030 7 6 4.0657 2.5126 -0.0003 8 6 3.4306 1.2829 -0.0004 9 6 5.5712 2.5544 -0.0062 10 6 6.0706 3.9092 0.4956 11 1 5.8482 4.0097 1.5579 12 6 7.5807 4.0132 0.2732 13 6 8.0781 5.3697 0.7767 14 6 8.2876 2.8944 1.0410 15 6 5.3581 5.0206 -0.2862 16 7 3.9224 4.9298 0.0117 17 6 3.1983 6.0563 0.2929 18 1 2.3210 5.9919 0.9195 19 6 3.5912 7.2814 -0.2271 20 7 4.5051 7.3322 -1.1728 21 14 2.8230 8.8582 0.4153 22 1 3.0922 8.9832 1.8703 23 1 3.4100 10.0211 -0.2978 24 1 1.3565 8.8243 0.1843 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2108 2.3191 0.0039 29 1 1.3301 4.5090 0.0023 30 1 4.0160 0.3753 -0.0009 31 1 5.9560 1.7663 0.6410 32 1 5.9320 2.3945 -1.0222 33 1 7.7988 3.9179 -0.7905 34 1 7.8601 5.4646 1.8405 35 1 9.1539 5.4440 0.6179 36 1 7.5746 6.1670 0.2301 37 1 7.9333 1.9278 0.6826 38 1 9.3634 2.9682 0.8822 39 1 8.0695 2.9897 2.1047 40 1 5.7389 5.9933 0.0251 41 1 5.5235 4.8844 -1.3549 42 1 4.8323 8.1902 -1.4855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817298859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -32.058102 kcal Electronic energy + Delta-G solvation = -21982.816601 eV Core-core repulsion = 18926.952689 eV Total energy + Delta-G solvation = -3055.863912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19868 -39.73507 -37.55135 -36.51501 -33.80161 -33.18401 -30.31831 -30.10087 -28.42282 -27.73269 -26.98312 -24.86707 -23.86295 -22.89411 -21.15633 -20.23443 -19.11931 -18.41041 -17.62412 -16.96153 -16.37236 -16.26282 -15.69989 -15.39384 -15.18994 -15.09247 -14.58207 -14.39752 -14.23531 -13.88574 -13.64612 -13.41604 -13.15873 -13.10289 -12.91442 -12.81037 -12.53907 -12.44308 -12.33494 -12.27371 -12.05291 -11.66165 -11.57530 -11.38595 -11.14701 -11.03381 -10.79352 -9.99850 -9.47527 -8.34514 -7.94054 -5.66526 0.65223 0.96884 1.40468 1.45533 1.50045 2.29412 2.71392 2.91529 3.25465 3.27210 3.87253 4.01425 4.05939 4.19899 4.23296 4.42609 4.46690 4.50185 4.53732 4.61948 4.67883 4.72382 4.78437 4.86852 4.87946 4.99339 5.05475 5.09908 5.15723 5.17175 5.24441 5.33262 5.35446 5.40646 5.47659 5.49651 5.60531 5.66760 5.74811 5.88014 6.01096 6.21377 6.79307 6.85531 7.52139 7.87994 8.79382 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.007574 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.169863 B = 3696.174423 C = 5710.772699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.016 3.984 4 C -0.151 4.151 5 C -0.194 4.194 6 C 0.166 3.834 7 C -0.168 4.168 8 C -0.099 4.099 9 C -0.050 4.050 10 C -0.096 4.096 11 H 0.054 0.946 12 C -0.081 4.081 13 C -0.145 4.145 14 C -0.139 4.139 15 C 0.166 3.834 16 N -0.482 5.482 17 C -0.314 4.314 18 H 0.080 0.920 19 C -0.017 4.017 20 N -0.907 5.907 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.271 1.271 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.016 0.984 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -9.128 3.270 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.256 6.256 3 C -0.030 4.030 4 C -0.170 4.170 5 C -0.219 4.219 6 C 0.055 3.945 7 C -0.174 4.174 8 C -0.119 4.119 9 C -0.086 4.086 10 C -0.116 4.116 11 H 0.072 0.928 12 C -0.100 4.100 13 C -0.202 4.202 14 C -0.196 4.196 15 C 0.042 3.958 16 N -0.175 5.175 17 C -0.443 4.443 18 H 0.098 0.902 19 C -0.217 4.217 20 N -0.546 5.546 21 Si 0.806 3.194 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.196 1.196 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.153 0.847 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.172 -8.884 3.108 9.659 hybrid contribution -0.922 1.471 -0.031 1.736 sum 1.250 -7.413 3.077 8.123 Atomic orbital electron populations 1.23130 0.77901 1.04726 1.01203 1.85918 1.22198 1.26692 1.90765 1.18544 0.92241 0.83964 1.08295 1.20991 0.99658 0.91396 1.04978 1.20504 0.93118 0.97297 1.10934 1.18250 0.92143 0.86500 0.97623 1.19228 0.96083 0.90758 1.11308 1.20078 0.91430 0.96900 1.03445 1.20273 0.89736 0.97361 1.01273 1.21578 0.95670 0.95318 0.99016 0.92796 1.21013 0.92355 0.96204 1.00414 1.21841 1.01152 0.96553 1.00664 1.21823 1.00336 0.97681 0.99796 1.21273 0.80382 0.98368 0.95757 1.42703 1.06787 1.02062 1.65931 1.19600 1.11779 0.85991 1.26892 0.90197 1.26047 0.98623 1.02076 0.94990 1.70179 1.31508 1.26579 1.26335 0.85150 0.78475 0.77443 0.78312 1.19525 1.20614 1.19638 0.92915 0.93065 0.86315 0.84748 0.87716 0.84633 0.89116 0.91558 0.91427 0.93144 0.90995 0.94434 0.91749 0.91295 0.92881 0.90705 0.96585 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 113.37 1.11 1.70 16 2 O -0.34 -11.17 10.50 -92.91 -0.98 -12.15 16 3 C 0.02 0.60 6.68 22.50 0.15 0.75 16 4 C -0.15 -5.87 9.03 22.33 0.20 -5.67 16 5 C -0.19 -8.94 9.19 22.44 0.21 -8.73 16 6 C 0.17 8.00 6.33 38.27 0.24 8.24 16 7 C -0.17 -6.97 5.76 -19.72 -0.11 -7.09 16 8 C -0.10 -3.76 9.60 22.40 0.22 -3.55 16 9 C -0.05 -1.74 4.47 29.77 0.13 -1.61 16 10 C -0.10 -3.61 1.94 -10.70 -0.02 -3.63 16 11 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.08 -2.41 2.49 -10.79 -0.03 -2.44 16 13 C -0.14 -4.34 8.87 71.98 0.64 -3.70 16 14 C -0.14 -3.21 8.85 71.98 0.64 -2.58 16 15 C 0.17 7.88 3.96 86.44 0.34 8.22 16 16 N -0.48 -25.07 2.98 -509.91 -1.52 -26.59 16 17 C -0.31 -17.09 8.63 84.04 0.73 -16.36 16 18 H 0.08 4.31 6.90 -2.91 -0.02 4.29 16 19 C -0.02 -0.92 5.03 84.85 0.43 -0.49 16 20 N -0.91 -49.98 11.03 21.64 0.24 -49.74 16 21 Si 0.98 42.19 29.57 68.60 2.03 44.22 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H 0.05 1.16 7.66 -2.38 -0.02 1.14 16 26 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 27 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.13 4.38 6.30 -2.91 -0.02 4.36 16 29 H 0.10 5.01 6.60 -2.91 -0.02 4.99 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.09 2.67 6.90 -2.39 -0.02 2.65 16 32 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.32 6.40 -2.39 -0.02 1.31 16 37 H 0.06 1.38 6.64 -2.38 -0.02 1.37 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 3.81 4.63 -2.39 -0.01 3.80 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.27 13.94 8.32 -92.70 -0.77 13.17 16 Total: -1.00 -61.78 325.34 5.64 -56.14 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.00 Total: 25.04 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 4.87 Total: -36.93 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.28 Total: -76.33 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.98 Total: -12.15 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -61.78 5.64 -56.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817298859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.085 kcal (2) G-P(sol) polarization free energy of solvation -61.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds