Wall clock time and date at job start Mon Mar 30 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35945 * 117.00206 * 2 1 4 4 C 1.38815 * 119.96369 * 359.97438 * 3 2 1 5 5 C 1.37913 * 119.87064 * 180.10867 * 4 3 2 6 6 C 1.39263 * 120.08696 * 359.93064 * 5 4 3 7 7 C 1.38787 * 120.08345 * 359.69151 * 6 5 4 8 8 C 1.38404 * 119.60747 * 0.66490 * 7 6 5 9 9 C 1.50606 * 121.48459 * 180.19836 * 7 6 5 10 10 C 1.52855 * 110.53165 * 339.73939 * 9 7 6 11 11 H 1.09003 * 109.68546 * 291.24377 * 10 9 7 12 12 C 1.53000 * 109.57330 * 170.91722 * 10 9 7 13 13 C 1.52998 * 109.47225 * 60.65279 * 12 10 9 14 14 C 1.53009 * 109.47083 * 180.64983 * 12 10 9 15 15 C 1.53423 * 108.83591 * 51.11359 * 10 9 7 16 16 N 1.39662 * 119.08386 * 179.78779 * 6 5 4 17 17 C 1.36836 * 120.52226 * 346.49510 * 16 6 5 18 18 H 1.07999 * 119.99868 * 333.21161 * 17 16 6 19 19 C 1.38760 * 119.99865 * 153.20929 * 17 16 6 20 20 N 1.31620 * 119.99720 * 345.08708 * 19 17 16 21 21 Si 1.86796 * 119.99968 * 165.08995 * 19 17 16 22 22 H 1.48497 * 109.47174 * 60.00037 * 21 19 17 23 23 H 1.48501 * 109.47175 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46861 * 299.99972 * 21 19 17 25 25 H 1.09006 * 109.47198 * 300.00491 * 1 2 3 26 26 H 1.08998 * 109.47106 * 59.99970 * 1 2 3 27 27 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.06518 * 0.12076 * 4 3 2 29 29 H 1.07992 * 119.95460 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.86130 * 179.62877 * 8 7 6 31 31 H 1.08999 * 109.41885 * 219.31866 * 9 7 6 32 32 H 1.08998 * 109.12105 * 99.96899 * 9 7 6 33 33 H 1.08997 * 109.47311 * 300.64746 * 12 10 9 34 34 H 1.09006 * 109.47633 * 59.99610 * 13 12 10 35 35 H 1.08998 * 109.47380 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47017 * 299.99699 * 13 12 10 37 37 H 1.08997 * 109.46853 * 300.00043 * 14 12 10 38 38 H 1.08994 * 109.46797 * 60.00035 * 14 12 10 39 39 H 1.08998 * 109.46972 * 180.02562 * 14 12 10 40 40 H 1.08997 * 109.79528 * 177.22313 * 15 10 9 41 41 H 1.09003 * 109.84308 * 56.40865 * 15 10 9 42 42 H 0.97002 * 119.99350 * 185.22652 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9176 3.6028 -0.0028 6 6 3.3083 3.6755 -0.0031 7 6 4.0657 2.5125 0.0054 8 6 3.4306 1.2828 0.0001 9 6 5.5712 2.5544 0.0098 10 6 6.0713 3.9090 -0.4916 11 1 5.8521 4.0109 -1.5544 12 6 7.5812 4.0129 -0.2673 13 6 8.2902 2.9038 -1.0471 14 6 8.0767 5.3759 -0.7550 15 6 5.3580 5.0203 0.2894 16 7 3.9226 4.9297 -0.0099 17 6 3.1989 6.0564 -0.2914 18 1 2.3151 5.9904 -0.9087 19 6 3.6005 7.2838 0.2162 20 7 4.4840 7.3357 1.1904 21 14 2.8872 8.8623 -0.4830 22 1 1.4136 8.8632 -0.3000 23 1 3.4752 10.0275 0.2253 24 1 3.2063 8.9510 -1.9306 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2109 2.3191 0.0010 29 1 1.3302 4.5090 -0.0036 30 1 4.0161 0.3752 0.0006 31 1 5.9575 1.7660 -0.6363 32 1 5.9299 2.3914 1.0260 33 1 7.7990 3.9062 0.7954 34 1 8.0725 3.0104 -2.1098 35 1 9.3658 2.9775 -0.8870 36 1 7.9373 1.9327 -0.6996 37 1 7.8590 5.4826 -1.8177 38 1 7.5716 6.1661 -0.1995 39 1 9.1524 5.4497 -0.5957 40 1 5.7391 5.9930 -0.0215 41 1 5.5213 4.8847 1.3586 42 1 4.7083 8.1875 1.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817298860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:05 Heat of formation + Delta-G solvation = -18.316848 kcal Electronic energy + Delta-G solvation = -21980.649238 eV Core-core repulsion = 18925.381191 eV Total energy + Delta-G solvation = -3055.268047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.58306 -38.25191 -36.12215 -34.80785 -32.18924 -31.47148 -28.78758 -28.56012 -27.11636 -26.34242 -25.38444 -23.25072 -22.34123 -21.17885 -19.76639 -18.73117 -17.28651 -16.89191 -15.92416 -15.38491 -15.04738 -14.58058 -14.23825 -14.03406 -13.70116 -13.49796 -13.09680 -12.84229 -12.63907 -12.32523 -12.15535 -12.08718 -11.81809 -11.61764 -11.41019 -11.16494 -11.11528 -11.05004 -10.96768 -10.63017 -10.43404 -10.23975 -10.15652 -9.88840 -9.63820 -9.44159 -9.02187 -8.25044 -7.84339 -6.43430 -6.21013 -3.69283 2.32060 2.64725 3.16730 3.18808 3.20852 4.04673 4.08547 4.67846 4.92677 5.05969 5.24228 5.35034 5.38853 5.47317 5.54032 5.67429 5.80049 5.81899 5.85252 5.93058 5.95687 6.02844 6.10508 6.17047 6.21247 6.35769 6.42344 6.48639 6.49696 6.60502 6.65187 6.77972 6.82814 7.02013 7.05109 7.17316 7.33515 7.38118 7.44728 7.56322 7.67520 8.03984 8.35260 8.69680 9.34299 9.72833 10.68211 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.007537 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.628683 B = 3714.334688 C = 5704.085504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.332 6.332 3 C 0.002 3.998 4 C -0.149 4.149 5 C -0.175 4.175 6 C 0.196 3.804 7 C -0.167 4.167 8 C -0.091 4.091 9 C -0.052 4.052 10 C -0.108 4.108 11 H 0.068 0.932 12 C -0.085 4.085 13 C -0.146 4.146 14 C -0.149 4.149 15 C 0.154 3.846 16 N -0.453 5.453 17 C -0.300 4.300 18 H 0.089 0.911 19 C 0.028 3.972 20 N -0.877 5.877 21 Si 0.921 3.079 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 -6.809 -2.480 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C -0.044 4.044 4 C -0.169 4.169 5 C -0.199 4.199 6 C 0.081 3.919 7 C -0.173 4.173 8 C -0.111 4.111 9 C -0.089 4.089 10 C -0.127 4.127 11 H 0.086 0.914 12 C -0.104 4.104 13 C -0.203 4.203 14 C -0.206 4.206 15 C 0.031 3.969 16 N -0.142 5.142 17 C -0.428 4.428 18 H 0.107 0.893 19 C -0.176 4.176 20 N -0.514 5.514 21 Si 0.748 3.252 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.121 -6.498 -2.400 7.244 hybrid contribution -0.765 1.017 -0.175 1.285 sum 1.356 -5.480 -2.575 6.205 Atomic orbital electron populations 1.22755 0.80526 1.02101 1.00534 1.85909 1.19526 1.28091 1.91228 1.18330 0.91883 0.83222 1.10960 1.20770 0.98147 0.92307 1.05683 1.20421 0.93147 0.96635 1.09656 1.17778 0.91288 0.85921 0.96875 1.18796 0.94420 0.91116 1.12991 1.19742 0.90863 0.96455 1.04006 1.20200 0.91545 0.96921 1.00227 1.21676 0.93734 0.96496 1.00791 0.91375 1.21029 0.94592 0.94944 0.99817 1.21873 0.99381 0.98793 1.00236 1.21889 0.99904 0.97500 1.01307 1.21491 0.80522 0.97740 0.97196 1.42606 1.06116 1.01909 1.63562 1.19419 1.10786 0.84144 1.28442 0.89336 1.25316 0.97355 0.99450 0.95479 1.69998 1.32776 1.26736 1.21914 0.86076 0.79148 0.80917 0.79099 1.19932 1.20877 1.19944 0.93695 0.93717 0.89735 0.87431 0.86237 0.87290 0.92069 0.92313 0.91431 0.92993 0.93375 0.92586 0.93078 0.91546 0.93534 0.88743 0.93539 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 9.81 101.05 0.99 1.49 16 2 O -0.33 -6.01 10.49 -19.57 -0.21 -6.22 16 3 C 0.00 0.04 6.68 -39.22 -0.26 -0.22 16 4 C -0.15 -2.99 9.03 -39.49 -0.36 -3.35 16 5 C -0.17 -3.93 9.19 -39.32 -0.36 -4.29 16 6 C 0.20 4.61 6.33 -83.71 -0.53 4.08 16 7 C -0.17 -3.53 5.76 -104.40 -0.60 -4.13 16 8 C -0.09 -1.83 9.60 -39.37 -0.38 -2.21 16 9 C -0.05 -0.95 4.49 -28.00 -0.13 -1.07 16 10 C -0.11 -2.00 1.94 -90.48 -0.18 -2.18 16 11 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.08 -1.31 2.49 -90.62 -0.23 -1.53 16 13 C -0.15 -1.90 8.86 37.16 0.33 -1.57 16 14 C -0.15 -2.25 8.85 37.16 0.33 -1.92 16 15 C 0.15 3.49 3.96 -3.60 -0.01 3.47 16 16 N -0.45 -11.23 2.98 -112.52 -0.34 -11.57 16 17 C -0.30 -7.75 8.64 -15.13 -0.13 -7.88 16 18 H 0.09 2.25 6.88 -52.49 -0.36 1.89 16 19 C 0.03 0.70 4.97 -17.45 -0.09 0.62 16 20 N -0.88 -22.97 11.15 55.49 0.62 -22.35 16 21 Si 0.92 19.84 29.58 -169.99 -5.03 14.81 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.86 6.30 -52.49 -0.33 1.53 16 29 H 0.12 2.72 6.58 -52.49 -0.35 2.38 16 30 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.06 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.70 6.65 -51.93 -0.35 0.36 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.13 6.38 -51.93 -0.33 0.80 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.26 4.64 -51.93 -0.24 2.02 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -27.48 325.42 -8.12 -35.59 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.47 Total: 5.53 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.60 Total: -20.70 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.28 Total: -33.92 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.21 Total: -6.22 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.48 -8.12 -35.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817298860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds