Wall clock time and date at job start Mon Mar 30 2020 03:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35945 * 117.00206 * 2 1 4 4 C 1.38815 * 119.96369 * 359.97438 * 3 2 1 5 5 C 1.37913 * 119.87064 * 180.10867 * 4 3 2 6 6 C 1.39263 * 120.08696 * 359.93064 * 5 4 3 7 7 C 1.38787 * 120.08345 * 359.69151 * 6 5 4 8 8 C 1.38404 * 119.60747 * 0.66490 * 7 6 5 9 9 C 1.50606 * 121.48459 * 180.19836 * 7 6 5 10 10 C 1.52855 * 110.53165 * 339.73939 * 9 7 6 11 11 H 1.09003 * 109.68546 * 291.24377 * 10 9 7 12 12 C 1.53000 * 109.57330 * 170.91722 * 10 9 7 13 13 C 1.52998 * 109.47225 * 60.65279 * 12 10 9 14 14 C 1.53009 * 109.47083 * 180.64983 * 12 10 9 15 15 C 1.53423 * 108.83591 * 51.11359 * 10 9 7 16 16 N 1.39662 * 119.08386 * 179.78779 * 6 5 4 17 17 C 1.36836 * 120.52226 * 346.49510 * 16 6 5 18 18 H 1.07999 * 119.99868 * 333.21161 * 17 16 6 19 19 C 1.38760 * 119.99865 * 153.20929 * 17 16 6 20 20 N 1.31620 * 119.99720 * 345.08708 * 19 17 16 21 21 Si 1.86796 * 119.99968 * 165.08995 * 19 17 16 22 22 H 1.48497 * 109.47174 * 60.00037 * 21 19 17 23 23 H 1.48501 * 109.47175 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46861 * 299.99972 * 21 19 17 25 25 H 1.09006 * 109.47198 * 300.00491 * 1 2 3 26 26 H 1.08998 * 109.47106 * 59.99970 * 1 2 3 27 27 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.06518 * 0.12076 * 4 3 2 29 29 H 1.07992 * 119.95460 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.86130 * 179.62877 * 8 7 6 31 31 H 1.08999 * 109.41885 * 219.31866 * 9 7 6 32 32 H 1.08998 * 109.12105 * 99.96899 * 9 7 6 33 33 H 1.08997 * 109.47311 * 300.64746 * 12 10 9 34 34 H 1.09006 * 109.47633 * 59.99610 * 13 12 10 35 35 H 1.08998 * 109.47380 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47017 * 299.99699 * 13 12 10 37 37 H 1.08997 * 109.46853 * 300.00043 * 14 12 10 38 38 H 1.08994 * 109.46797 * 60.00035 * 14 12 10 39 39 H 1.08998 * 109.46972 * 180.02562 * 14 12 10 40 40 H 1.08997 * 109.79528 * 177.22313 * 15 10 9 41 41 H 1.09003 * 109.84308 * 56.40865 * 15 10 9 42 42 H 0.97002 * 119.99350 * 185.22652 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9176 3.6028 -0.0028 6 6 3.3083 3.6755 -0.0031 7 6 4.0657 2.5125 0.0054 8 6 3.4306 1.2828 0.0001 9 6 5.5712 2.5544 0.0098 10 6 6.0713 3.9090 -0.4916 11 1 5.8521 4.0109 -1.5544 12 6 7.5812 4.0129 -0.2673 13 6 8.2902 2.9038 -1.0471 14 6 8.0767 5.3759 -0.7550 15 6 5.3580 5.0203 0.2894 16 7 3.9226 4.9297 -0.0099 17 6 3.1989 6.0564 -0.2914 18 1 2.3151 5.9904 -0.9087 19 6 3.6005 7.2838 0.2162 20 7 4.4840 7.3357 1.1904 21 14 2.8872 8.8623 -0.4830 22 1 1.4136 8.8632 -0.3000 23 1 3.4752 10.0275 0.2253 24 1 3.2063 8.9510 -1.9306 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2109 2.3191 0.0010 29 1 1.3302 4.5090 -0.0036 30 1 4.0161 0.3752 0.0006 31 1 5.9575 1.7660 -0.6363 32 1 5.9299 2.3914 1.0260 33 1 7.7990 3.9062 0.7954 34 1 8.0725 3.0104 -2.1098 35 1 9.3658 2.9775 -0.8870 36 1 7.9373 1.9327 -0.6996 37 1 7.8590 5.4826 -1.8177 38 1 7.5716 6.1661 -0.1995 39 1 9.1524 5.4497 -0.5957 40 1 5.7391 5.9930 -0.0215 41 1 5.5213 4.8847 1.3586 42 1 4.7083 8.1875 1.5967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817298860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:04 Heat of formation + Delta-G solvation = -31.647015 kcal Electronic energy + Delta-G solvation = -21981.227278 eV Core-core repulsion = 18925.381191 eV Total energy + Delta-G solvation = -3055.846086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19513 -39.73295 -37.55177 -36.51048 -33.80589 -33.18630 -30.31696 -30.10353 -28.42206 -27.73308 -26.98103 -24.87003 -23.87671 -22.88925 -21.15598 -20.23932 -19.10192 -18.40833 -17.62818 -16.96656 -16.37033 -16.26354 -15.70453 -15.39775 -15.20098 -15.08466 -14.58169 -14.39778 -14.24135 -13.88301 -13.64468 -13.42134 -13.15272 -13.10016 -12.91980 -12.81282 -12.53976 -12.44072 -12.34026 -12.27913 -12.05155 -11.66421 -11.57467 -11.39041 -11.15617 -11.04001 -10.79758 -9.99288 -9.47113 -8.31473 -7.98887 -5.63539 0.65765 0.97033 1.39872 1.45377 1.49665 2.28230 2.71822 2.90368 3.25348 3.26390 3.86912 4.00774 4.05510 4.20298 4.23464 4.41923 4.46936 4.50342 4.53588 4.61535 4.67551 4.72236 4.78565 4.86945 4.87531 4.98879 5.05269 5.09699 5.15575 5.16853 5.23551 5.33205 5.35696 5.41005 5.48511 5.49034 5.59795 5.66092 5.75407 5.88304 6.01687 6.21636 6.79037 6.85508 7.52156 7.87769 8.78823 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.007537 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.628683 B = 3714.334688 C = 5704.085504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.341 6.341 3 C 0.015 3.985 4 C -0.151 4.151 5 C -0.195 4.195 6 C 0.166 3.834 7 C -0.168 4.168 8 C -0.099 4.099 9 C -0.049 4.049 10 C -0.096 4.096 11 H 0.054 0.946 12 C -0.081 4.081 13 C -0.139 4.139 14 C -0.145 4.145 15 C 0.166 3.834 16 N -0.481 5.481 17 C -0.317 4.317 18 H 0.081 0.919 19 C -0.016 4.016 20 N -0.908 5.908 21 Si 0.982 3.018 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -9.065 -3.204 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.256 6.256 3 C -0.031 4.031 4 C -0.170 4.170 5 C -0.219 4.219 6 C 0.054 3.946 7 C -0.174 4.174 8 C -0.118 4.118 9 C -0.086 4.086 10 C -0.116 4.116 11 H 0.072 0.928 12 C -0.100 4.100 13 C -0.196 4.196 14 C -0.202 4.202 15 C 0.042 3.958 16 N -0.174 5.174 17 C -0.446 4.446 18 H 0.098 0.902 19 C -0.216 4.216 20 N -0.546 5.546 21 Si 0.807 3.193 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.196 1.196 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.238 -8.809 -3.132 9.614 hybrid contribution -0.964 1.470 0.069 1.759 sum 1.274 -7.339 -3.064 8.055 Atomic orbital electron populations 1.23127 0.77915 1.04714 1.01196 1.85916 1.22186 1.26704 1.90781 1.18540 0.92239 0.83958 1.08410 1.20987 0.99643 0.91402 1.04957 1.20497 0.93106 0.97284 1.11012 1.18232 0.92138 0.86455 0.97748 1.19217 0.96060 0.90767 1.11399 1.20074 0.91429 0.96886 1.03439 1.20262 0.89756 0.97315 1.01287 1.21569 0.95666 0.95307 0.99013 0.92770 1.21016 0.92355 0.96180 1.00442 1.21820 1.00330 0.97757 0.99716 1.21845 1.01167 0.96530 1.00695 1.21273 0.80336 0.98339 0.95809 1.42723 1.06796 1.02066 1.65769 1.19573 1.11039 0.85306 1.28664 0.90154 1.26043 0.97908 1.01946 0.95671 1.70122 1.34221 1.27064 1.23232 0.85135 0.78456 0.77333 0.78385 1.19539 1.20575 1.19553 0.93081 0.92920 0.86323 0.84769 0.87716 0.84655 0.89121 0.91567 0.91395 0.92891 0.91283 0.91737 0.93167 0.94449 0.90978 0.90841 0.96535 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 113.37 1.11 1.70 16 2 O -0.34 -11.20 10.49 -92.93 -0.98 -12.17 16 3 C 0.01 0.56 6.68 22.50 0.15 0.71 16 4 C -0.15 -5.87 9.03 22.33 0.20 -5.67 16 5 C -0.19 -8.96 9.19 22.44 0.21 -8.76 16 6 C 0.17 7.99 6.33 38.27 0.24 8.23 16 7 C -0.17 -7.01 5.76 -19.72 -0.11 -7.12 16 8 C -0.10 -3.76 9.60 22.40 0.22 -3.54 16 9 C -0.05 -1.73 4.49 29.77 0.13 -1.60 16 10 C -0.10 -3.60 1.94 -10.70 -0.02 -3.62 16 11 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.08 -2.42 2.49 -10.79 -0.03 -2.44 16 13 C -0.14 -3.21 8.86 71.98 0.64 -2.58 16 14 C -0.15 -4.36 8.85 71.99 0.64 -3.73 16 15 C 0.17 7.90 3.96 86.44 0.34 8.24 16 16 N -0.48 -25.02 2.98 -509.92 -1.52 -26.54 16 17 C -0.32 -17.27 8.64 84.04 0.73 -16.54 16 18 H 0.08 4.33 6.88 -2.91 -0.02 4.31 16 19 C -0.02 -0.82 4.97 84.85 0.42 -0.40 16 20 N -0.91 -50.00 11.15 21.64 0.24 -49.76 16 21 Si 0.98 42.13 29.58 68.60 2.03 44.16 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H 0.05 1.15 7.66 -2.38 -0.02 1.13 16 26 H 0.05 1.16 7.66 -2.39 -0.02 1.15 16 27 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.13 4.38 6.30 -2.91 -0.02 4.36 16 29 H 0.10 5.02 6.58 -2.91 -0.02 5.00 16 30 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.09 2.67 6.90 -2.39 -0.02 2.65 16 32 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.39 6.65 -2.38 -0.02 1.37 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.33 6.38 -2.39 -0.02 1.31 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 3.75 4.64 -2.39 -0.01 3.74 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.27 14.02 8.32 -92.71 -0.77 13.25 16 Total: -1.00 -61.77 325.42 5.64 -56.14 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 1.00 Total: 25.29 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.87 Total: -37.11 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.28 Total: -76.30 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.98 Total: -12.17 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -61.77 5.64 -56.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817298860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.489 kcal (2) G-P(sol) polarization free energy of solvation -61.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds