Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00399 * 2 1 3 5 5 C 1.37981 * 120.06970 * 306.13324 * 4 2 1 6 6 C 1.38339 * 120.14188 * 179.72720 * 5 4 2 7 7 C 1.38378 * 120.29355 * 0.29183 * 6 5 4 8 8 C 1.37936 * 120.14778 * 0.02562 * 7 6 5 9 9 C 1.39552 * 120.07785 * 126.42595 * 4 2 1 10 10 C 1.47849 * 120.14307 * 359.97438 * 9 4 2 11 11 O 1.21555 * 120.00131 * 39.37156 * 10 9 4 12 12 N 1.34779 * 120.00203 * 219.36408 * 10 9 4 13 13 C 1.46498 * 120.00054 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47064 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47201 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47253 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00174 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00043 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00243 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47090 * 90.00215 * 20 18 16 22 22 H 1.48492 * 109.47313 * 210.00666 * 20 18 16 23 23 H 1.48506 * 109.46785 * 330.00377 * 20 18 16 24 24 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 25 25 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46976 * 299.99600 * 1 2 3 27 27 H 1.08999 * 109.46917 * 240.00057 * 2 1 3 28 28 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47220 * 300.00299 * 3 2 1 30 30 H 1.08999 * 109.47011 * 60.00114 * 3 2 1 31 31 H 1.08000 * 119.92731 * 359.97438 * 5 4 2 32 32 H 1.07995 * 119.85124 * 180.28095 * 6 5 4 33 33 H 1.08004 * 119.93054 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.07911 * 179.97438 * 8 7 6 35 35 H 0.97001 * 119.99909 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47497 * 300.00315 * 13 12 10 37 37 H 1.09002 * 109.46758 * 60.00425 * 13 12 10 38 38 H 1.08997 * 109.47136 * 300.00433 * 14 13 12 39 39 H 1.09002 * 109.47070 * 60.00513 * 14 13 12 40 40 H 1.09005 * 109.47179 * 299.99971 * 15 14 13 41 41 H 1.09008 * 109.47177 * 60.00020 * 15 14 13 42 42 H 0.96998 * 120.00485 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.5990 -0.3186 2.4804 6 6 2.0549 -0.9735 3.6105 7 6 2.9521 -2.0207 3.4962 8 6 3.3983 -2.4181 2.2530 9 6 2.9416 -1.7621 1.1085 10 6 3.4147 -2.1835 -0.2274 11 8 3.6539 -1.3492 -1.0784 12 7 3.5810 -3.4926 -0.5015 13 6 4.0493 -3.9100 -1.8253 14 6 4.1509 -5.4359 -1.8726 15 6 4.6406 -5.8719 -3.2549 16 6 4.7401 -7.3749 -3.3016 17 1 4.4797 -7.9606 -2.4324 18 6 5.1626 -8.0023 -4.4544 19 7 5.4792 -7.2891 -5.5131 20 14 5.2853 -9.8654 -4.5126 21 1 3.9927 -10.4324 -4.9738 22 1 6.3635 -10.2613 -5.4537 23 1 5.5973 -10.3835 -3.1563 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.8993 0.4985 2.5765 32 1 1.7091 -0.6658 4.5863 33 1 3.3045 -2.5276 4.3825 34 1 4.0989 -3.2354 2.1651 35 1 3.3898 -4.1583 0.1776 36 1 3.3447 -3.5695 -2.5841 37 1 5.0295 -3.4741 -2.0180 38 1 4.8553 -5.7768 -1.1138 39 1 3.1704 -5.8715 -1.6800 40 1 3.9365 -5.5310 -4.0140 41 1 5.6212 -5.4363 -3.4471 42 1 5.7768 -7.7305 -6.3239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826123059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = -61.505985 kcal Electronic energy + Delta-G solvation = -20529.204152 eV Core-core repulsion = 17472.063283 eV Total energy + Delta-G solvation = -3057.140868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50561 -39.50214 -37.07942 -36.25958 -35.17302 -33.29278 -31.94977 -30.73629 -28.61235 -28.01374 -25.59073 -24.37144 -23.99572 -22.36105 -21.40927 -20.89674 -18.77659 -18.43527 -17.37122 -16.95107 -16.64233 -16.45597 -16.15341 -15.66274 -15.14604 -14.93982 -14.82299 -14.45227 -14.41332 -14.17036 -13.78246 -13.57589 -13.29278 -13.08268 -12.93508 -12.76636 -12.59255 -12.52781 -12.39391 -12.07571 -11.91693 -11.69638 -11.59679 -11.51557 -11.23689 -10.73236 -10.56514 -10.16844 -9.87652 -9.65649 -8.20446 -6.32243 -0.00141 0.42600 1.41220 1.42705 1.53698 1.72355 2.15696 2.42003 2.82212 3.13281 3.64138 3.75006 3.85025 4.12391 4.14617 4.17935 4.27445 4.29537 4.46966 4.50279 4.51221 4.54966 4.76790 4.88222 4.89651 4.90741 4.93829 4.96246 5.10531 5.13918 5.20009 5.23559 5.36380 5.39834 5.43222 5.50528 5.54220 5.67785 5.68320 5.82498 5.99808 6.20740 6.50187 6.85080 7.15519 7.37497 8.91736 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.003091 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.365659 B = 9055.388488 C = 9650.822013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.037 4.037 5 C -0.126 4.126 6 C -0.090 4.090 7 C -0.130 4.130 8 C -0.091 4.091 9 C -0.155 4.155 10 C 0.550 3.450 11 O -0.573 6.573 12 N -0.709 5.709 13 C 0.130 3.870 14 C -0.101 4.101 15 C 0.024 3.976 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.414 0.586 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.067 0.933 40 H -0.008 1.008 41 H -0.007 1.007 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 13.711 21.701 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C -0.186 4.186 4 C -0.038 4.038 5 C -0.144 4.144 6 C -0.108 4.108 7 C -0.148 4.148 8 C -0.110 4.110 9 C -0.158 4.158 10 C 0.339 3.661 11 O -0.454 6.454 12 N -0.360 5.360 13 C 0.006 3.994 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.156 0.844 35 H 0.250 0.750 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.626 14.261 20.908 27.078 hybrid contribution 0.411 -1.213 -0.725 1.472 sum -9.214 13.049 20.183 25.740 Atomic orbital electron populations 1.21838 0.92916 1.01739 1.03006 1.20433 0.96853 0.97070 0.95734 1.21677 1.00191 0.94150 1.02549 1.20045 0.94264 0.93144 0.96302 1.21222 1.01178 1.01171 0.90785 1.21741 0.95121 0.94304 0.99632 1.21449 0.97939 0.98010 0.97370 1.21509 0.98922 0.98702 0.91871 1.19807 1.02973 1.00675 0.92304 1.18866 0.76872 0.82332 0.88067 1.90716 1.52197 1.52500 1.49975 1.45971 1.67097 1.07245 1.15713 1.21267 0.98589 0.95822 0.83693 1.21599 1.01641 0.91760 0.98924 1.18939 0.94712 0.95417 0.92293 1.21677 1.44487 0.93094 0.98706 0.91512 1.26035 0.94899 1.03881 0.95303 1.70112 1.46245 1.37666 1.03538 0.85402 0.77890 0.79015 0.78467 1.19808 1.21011 1.18357 0.91951 0.93483 0.90452 0.91508 0.94477 0.92072 0.90755 0.83393 0.82400 0.82671 0.84381 0.74957 0.93191 0.93020 0.91243 0.91446 0.99003 0.98904 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.94 71.98 0.64 -1.90 16 2 C -0.08 -1.98 2.65 -11.54 -0.03 -2.01 16 3 C -0.13 -2.72 9.06 71.98 0.65 -2.07 16 4 C -0.04 -0.83 4.81 -19.61 -0.09 -0.93 16 5 C -0.13 -2.00 8.76 22.23 0.19 -1.81 16 6 C -0.09 -1.13 10.04 22.33 0.22 -0.91 16 7 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 8 C -0.09 -1.74 9.34 22.53 0.21 -1.53 16 9 C -0.15 -3.91 5.76 -20.09 -0.12 -4.03 16 10 C 0.55 17.69 6.90 86.79 0.60 18.29 16 11 O -0.57 -22.80 14.48 -3.89 -0.06 -22.86 16 12 N -0.71 -21.21 5.48 -465.97 -2.55 -23.76 16 13 C 0.13 4.77 5.67 86.38 0.49 5.26 16 14 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 15 C 0.02 1.27 4.97 29.85 0.15 1.42 16 16 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 19 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 20 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.05 7.07 -2.38 -0.02 1.03 16 27 H 0.07 2.13 5.10 -2.39 -0.01 2.12 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.18 7.78 -2.39 -0.02 1.16 16 31 H 0.15 1.64 7.10 -2.91 -0.02 1.62 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.14 2.24 7.81 -2.91 -0.02 2.21 16 35 H 0.41 9.76 7.86 -92.71 -0.73 9.03 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 41 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -71.75 347.20 3.97 -67.78 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.27 Total: 15.66 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.00 Total: -25.56 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.27 Total: -80.99 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.75 3.97 -67.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826123059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.274 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds