Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 120.02611 * 2 1 4 4 C 1.38243 * 120.05887 * 179.77003 * 3 2 1 5 5 C 1.38288 * 120.10724 * 0.51419 * 4 3 2 6 6 C 1.38126 * 120.05386 * 359.48327 * 5 4 3 7 7 C 1.50707 * 120.02571 * 180.23567 * 6 5 4 8 8 N 1.46904 * 109.47066 * 260.00489 * 7 6 5 9 9 C 1.46840 * 110.99988 * 45.78760 * 8 7 6 10 10 C 1.53037 * 109.52369 * 185.83937 * 9 8 7 11 11 C 1.53119 * 109.27750 * 300.82630 * 10 9 8 12 12 C 1.53121 * 109.16464 * 57.65096 * 11 10 9 13 13 H 1.09000 * 109.53263 * 62.30944 * 12 11 10 14 14 C 1.50701 * 109.50627 * 182.40506 * 12 11 10 15 15 H 1.07992 * 119.99842 * 119.80158 * 14 12 11 16 16 C 1.37879 * 119.99599 * 299.80715 * 14 12 11 17 17 N 1.31510 * 120.00303 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99677 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47395 * 59.99380 * 18 16 14 20 20 H 1.48492 * 109.47398 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47090 * 299.99763 * 18 16 14 22 22 C 1.46846 * 110.99875 * 170.00248 * 8 7 6 23 23 C 1.38706 * 120.03216 * 180.02562 * 2 1 3 24 24 O 1.35908 * 120.05344 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.46830 * 269.97493 * 1 2 3 26 26 H 1.08996 * 109.47522 * 29.97164 * 1 2 3 27 27 H 1.09002 * 109.46847 * 149.98052 * 1 2 3 28 28 H 1.08007 * 119.97101 * 0.02562 * 3 2 1 29 29 H 1.07993 * 119.94940 * 180.25047 * 4 3 2 30 30 H 1.08002 * 119.97454 * 179.76977 * 5 4 3 31 31 H 1.08998 * 109.47032 * 20.00008 * 7 6 5 32 32 H 1.08994 * 109.46956 * 140.00456 * 7 6 5 33 33 H 1.08996 * 109.46578 * 305.85729 * 9 8 7 34 34 H 1.08999 * 109.46288 * 65.82351 * 9 8 7 35 35 H 1.08998 * 109.50999 * 180.88285 * 10 9 8 36 36 H 1.08999 * 109.50473 * 60.76413 * 10 9 8 37 37 H 1.09001 * 109.52128 * 297.74214 * 11 10 9 38 38 H 1.09005 * 109.52369 * 177.55544 * 11 10 9 39 39 H 0.97003 * 119.99532 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.45950 * 294.17676 * 22 8 7 41 41 H 1.08996 * 109.46412 * 54.14011 * 22 8 7 42 42 H 0.96694 * 114.00358 * 269.97922 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1970 0.0048 5 6 4.2752 0.0011 -0.0011 6 6 3.5887 -1.1974 -0.0011 7 6 4.3461 -2.5003 -0.0022 8 7 4.3833 -3.0439 -1.3664 9 6 4.7321 -2.0008 -2.3392 10 6 4.6195 -2.5654 -3.7571 11 6 5.5650 -3.7612 -3.9017 12 6 5.2113 -4.8121 -2.8457 13 1 4.1958 -5.1705 -3.0140 14 6 6.1749 -5.9668 -2.9425 15 1 6.7939 -6.2259 -2.0964 16 6 6.2662 -6.6922 -4.1115 17 7 5.5121 -6.3768 -5.1417 18 14 7.4601 -8.1239 -4.2313 19 1 7.1188 -9.1404 -3.2039 20 1 7.3665 -8.7348 -5.5815 21 1 8.8437 -7.6350 -4.0034 22 6 5.3069 -4.1822 -1.4543 23 6 2.2012 -1.2008 -0.0005 24 8 1.5235 -2.3789 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1316 0.0004 29 1 4.1194 2.1331 0.0089 30 1 5.3552 0.0043 -0.0011 31 1 5.3638 -2.3292 0.3486 32 1 3.8486 -3.2103 0.6584 33 1 4.0496 -1.1581 -2.2286 34 1 5.7541 -1.6658 -2.1618 35 1 4.8935 -1.7956 -4.4784 36 1 3.5945 -2.8879 -3.9401 37 1 6.5938 -3.4315 -3.7572 38 1 5.4562 -4.1934 -4.8964 39 1 5.5762 -6.8875 -5.9640 40 1 6.3261 -3.8371 -1.2810 41 1 5.0418 -4.9240 -0.7009 42 1 1.3279 -2.7202 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -27.048148 kcal Electronic energy + Delta-G solvation = -21681.513162 eV Core-core repulsion = 18625.866498 eV Total energy + Delta-G solvation = -3055.646664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16380 -37.93362 -36.49964 -34.26149 -32.63735 -31.57315 -30.12595 -29.45615 -26.86099 -25.81997 -24.85689 -22.40700 -21.73853 -21.38167 -20.22026 -18.52416 -18.12041 -16.38925 -16.01818 -15.77422 -15.10620 -14.96583 -14.41671 -14.02815 -13.69714 -13.51886 -13.25960 -13.07404 -12.85564 -12.46218 -12.38977 -12.16260 -11.76915 -11.74820 -11.69056 -11.43015 -11.07465 -10.89080 -10.66596 -10.58694 -10.23764 -10.03826 -9.76673 -9.39214 -8.98399 -8.66345 -8.61019 -8.46751 -8.23921 -7.51239 -5.91878 -3.98159 1.28641 1.29796 3.35337 3.40021 3.42231 3.59828 4.31825 4.46135 4.70333 4.77827 4.81281 4.96737 5.21166 5.37844 5.40115 5.51027 5.52229 5.60012 5.73412 5.80840 5.85857 5.95861 6.03547 6.14356 6.18475 6.34839 6.41758 6.43780 6.47682 6.58919 6.61734 6.82323 6.83144 6.85183 7.05001 7.30537 7.47445 7.75800 7.80254 7.83244 7.90806 8.15949 8.24476 8.54243 9.05864 9.65658 11.14077 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033635 B = 0.004070 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.261357 B = 6878.075270 C = 6978.288751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C -0.113 4.113 4 C -0.128 4.128 5 C -0.107 4.107 6 C -0.095 4.095 7 C 0.099 3.901 8 N -0.523 5.523 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.109 4.109 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.068 3.932 23 C 0.126 3.874 24 O -0.478 6.478 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.260 0.740 40 H 0.017 0.983 41 H 0.058 0.942 42 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 14.406 11.534 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.131 4.131 4 C -0.146 4.146 5 C -0.126 4.126 6 C -0.096 4.096 7 C -0.028 4.028 8 N -0.248 5.248 9 C -0.064 4.064 10 C -0.155 4.155 11 C -0.147 4.147 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.059 4.059 23 C 0.081 3.919 24 O -0.287 6.287 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.244 14.206 10.613 19.156 hybrid contribution 1.558 -0.479 0.562 1.724 sum -5.686 13.728 11.176 18.592 Atomic orbital electron populations 1.20663 0.90872 1.03211 1.01935 1.20229 0.96621 0.92652 1.02249 1.20872 0.94135 0.96979 1.01117 1.21054 0.94208 0.97850 1.01525 1.20989 0.99826 0.91631 1.00138 1.20248 0.93376 0.95615 1.00325 1.20913 0.96857 0.92160 0.92910 1.62124 1.52489 1.08277 1.01873 1.22052 0.97175 0.93609 0.93545 1.21668 1.01491 0.98610 0.93705 1.21644 0.95195 0.93688 1.04218 1.18644 0.97629 0.92298 0.87692 0.94711 1.21117 1.22070 1.13693 0.98509 0.92952 1.24930 0.95779 0.97244 0.95846 1.69891 1.39361 1.40117 1.03301 0.86698 0.81596 0.82840 0.77055 1.20326 1.21336 1.20429 1.22327 0.91297 0.90679 1.01570 1.18075 0.89057 0.85006 0.99796 1.84931 1.75883 1.35599 1.32298 0.91645 0.91752 0.90702 0.86086 0.86093 0.86083 0.94918 0.90487 0.92171 0.96383 0.93772 0.92147 0.95300 0.89207 0.93042 0.96460 0.92327 0.76321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.79 36.01 0.35 -0.71 16 2 C -0.12 -1.40 5.89 -104.47 -0.62 -2.02 16 3 C -0.11 -1.23 9.70 -39.61 -0.38 -1.61 16 4 C -0.13 -1.42 10.04 -39.56 -0.40 -1.82 16 5 C -0.11 -1.36 8.64 -39.60 -0.34 -1.70 16 6 C -0.09 -1.35 3.69 -104.47 -0.39 -1.74 16 7 C 0.10 1.58 5.07 -4.97 -0.03 1.55 16 8 N -0.52 -10.24 4.80 -236.12 -1.13 -11.37 16 9 C 0.06 1.23 4.80 -3.84 -0.02 1.21 16 10 C -0.12 -2.47 6.09 -26.65 -0.16 -2.63 16 11 C -0.11 -2.70 5.03 -26.61 -0.13 -2.83 16 12 C 0.06 1.45 2.26 -91.69 -0.21 1.25 16 13 H 0.03 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.52 -14.41 8.56 -34.44 -0.29 -14.71 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.86 11.36 55.43 0.63 -25.23 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.07 1.50 4.65 -3.84 -0.02 1.48 16 23 C 0.13 1.74 6.65 -39.22 -0.26 1.48 16 24 O -0.48 -6.52 11.79 -19.45 -0.23 -6.75 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 28 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 31 H 0.03 0.50 7.94 -51.93 -0.41 0.09 16 32 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 33 H 0.06 1.10 6.03 -51.93 -0.31 0.79 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.27 8.12 -51.93 -0.42 0.84 16 42 H 0.38 3.36 9.06 45.56 0.41 3.77 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -30.93 332.97 -9.76 -40.70 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.04 Total: 2.23 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.99 Total: -21.12 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.50 Total: -36.60 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.23 Total: -6.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.93 -9.76 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.650 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds