Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31759 * 1 3 3 O 1.35635 * 120.00002 * 2 1 4 4 C 1.35971 * 118.00135 * 185.04770 * 3 2 1 5 5 C 1.38730 * 119.98346 * 354.54630 * 4 3 2 6 6 C 1.38091 * 120.01479 * 180.02562 * 5 4 3 7 7 C 1.38873 * 119.98563 * 359.97438 * 6 5 4 8 8 N 1.39917 * 120.01717 * 179.97438 * 7 6 5 9 9 C 1.46504 * 120.00239 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47108 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47569 * 299.99811 * 10 9 8 12 12 C 1.52998 * 109.47253 * 60.00446 * 10 9 8 13 13 C 1.53004 * 109.47061 * 179.97438 * 10 9 8 14 14 C 1.50692 * 109.47310 * 180.02562 * 13 10 9 15 15 H 1.07999 * 120.00063 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00180 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00206 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47345 * 60.00201 * 18 16 14 20 20 H 1.48504 * 109.47279 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47434 * 300.00305 * 18 16 14 22 22 C 1.38874 * 119.96609 * 0.27377 * 7 6 5 23 23 C 1.38086 * 119.98267 * 359.47268 * 22 7 6 24 24 H 1.07997 * 119.99994 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99526 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.99947 * 180.02562 * 2 1 3 27 27 H 1.08000 * 119.99081 * 0.02562 * 5 4 3 28 28 H 1.08005 * 120.00557 * 179.97438 * 6 5 4 29 29 H 0.97003 * 119.99818 * 0.02562 * 8 7 6 30 30 H 1.08999 * 109.46943 * 300.00208 * 9 8 7 31 31 H 1.08998 * 109.46919 * 59.99968 * 9 8 7 32 32 H 1.09000 * 109.46975 * 59.99960 * 11 10 9 33 33 H 1.09001 * 109.47409 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.47108 * 300.00454 * 11 10 9 35 35 H 1.08999 * 109.47360 * 59.99472 * 12 10 9 36 36 H 1.09001 * 109.47518 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.46839 * 299.99120 * 12 10 9 38 38 H 1.09007 * 109.46838 * 299.99901 * 13 10 9 39 39 H 1.08998 * 109.46921 * 59.99972 * 13 10 9 40 40 H 0.97000 * 119.99953 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00748 * 179.72144 * 22 7 6 42 42 H 1.07996 * 119.99369 * 180.23538 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3176 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3506 1.1295 -0.1056 5 6 4.0065 -0.0929 -0.0951 6 6 5.3825 -0.1394 -0.2018 7 6 6.1097 1.0378 -0.3202 8 7 7.5040 0.9915 -0.4278 9 6 8.2708 2.2336 -0.5521 10 6 9.7615 1.9046 -0.6535 11 6 10.2052 1.1552 0.6044 12 6 10.0079 1.0281 -1.8830 13 6 10.5623 3.2018 -0.7839 14 6 12.0306 2.8778 -0.8844 15 1 12.3597 1.8496 -0.8574 16 6 12.9538 3.8941 -1.0107 17 7 12.5530 5.1463 -1.0430 18 14 14.7738 3.4926 -1.1345 19 1 15.0128 2.6406 -2.3272 20 1 15.5511 4.7516 -1.2613 21 1 15.2048 2.7662 0.0869 22 6 5.4528 2.2614 -0.3254 23 6 4.0764 2.3061 -0.2239 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8576 -0.9353 -0.0004 27 1 3.4409 -1.0083 -0.0035 28 1 5.8931 -1.0911 -0.1932 29 1 7.9628 0.1369 -0.4201 30 1 7.9551 2.7673 -1.4485 31 1 8.0949 2.8583 0.3236 32 1 9.6346 0.2310 0.6969 33 1 11.2671 0.9204 0.5320 34 1 10.0296 1.7797 1.4803 35 1 9.6919 1.5620 -2.7792 36 1 11.0700 0.7940 -1.9555 37 1 9.4375 0.1039 -1.7905 38 1 10.2462 3.7354 -1.6804 39 1 10.3868 3.8267 0.0917 40 1 13.2025 5.8613 -1.1315 41 1 6.0180 3.1775 -0.4129 42 1 3.5651 3.2573 -0.2318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839154008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = 4.157354 kcal Electronic energy + Delta-G solvation = -20480.670679 eV Core-core repulsion = 17426.377187 eV Total energy + Delta-G solvation = -3054.293492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54009 -38.75397 -37.14849 -34.05242 -32.40023 -31.85289 -30.95242 -28.41808 -26.95518 -26.52650 -25.77617 -23.59233 -22.69298 -22.09936 -20.25407 -18.85749 -18.21813 -16.95486 -16.40327 -16.04253 -15.41919 -14.79804 -14.70389 -14.47879 -14.37584 -13.80702 -13.63142 -13.22866 -13.06371 -12.95804 -12.86116 -12.21708 -12.07697 -12.06560 -11.84031 -11.23097 -11.03088 -10.89253 -10.74056 -10.66485 -10.39031 -10.28610 -10.11455 -9.80010 -9.23376 -9.03251 -8.97431 -8.89995 -8.39055 -6.98647 -6.03525 -4.04670 1.33374 1.47075 2.22574 3.09977 3.29754 3.35196 3.36526 3.71592 3.87852 4.42536 4.44614 4.80075 4.92996 5.28737 5.32059 5.34065 5.40680 5.54175 5.56969 5.70373 5.72387 5.79011 5.96762 6.09901 6.14923 6.14973 6.21824 6.24743 6.35572 6.38036 6.40849 6.60956 6.61835 6.71826 7.01184 7.04459 7.07760 7.48316 7.58525 7.63718 7.71422 7.94884 7.95777 8.37421 8.99689 9.58574 11.07895 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.053632 B = 0.002830 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.955883 B = 9891.248985 C =10214.897061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.026 3.974 3 O -0.256 6.256 4 C 0.037 3.963 5 C -0.147 4.147 6 C -0.169 4.169 7 C 0.205 3.795 8 N -0.738 5.738 9 C 0.131 3.869 10 C -0.070 4.070 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.036 3.964 14 C -0.512 4.512 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.165 4.165 23 C -0.086 4.086 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.398 0.602 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.133 0.867 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 -10.559 1.742 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.035 4.035 3 O -0.167 6.167 4 C -0.008 4.008 5 C -0.166 4.166 6 C -0.192 4.192 7 C 0.099 3.901 8 N -0.367 5.367 9 C 0.007 3.993 10 C -0.071 4.071 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.187 4.187 23 C -0.105 4.105 24 H 0.122 0.878 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.234 0.766 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.151 0.849 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.334 -9.983 1.723 20.077 hybrid contribution 1.278 -0.630 -0.066 1.426 sum -16.056 -10.613 1.657 19.318 Atomic orbital electron populations 1.23455 0.93367 1.03142 1.09390 1.22547 0.93347 0.88237 0.99358 1.84317 1.17526 1.30665 1.84188 1.18683 0.80770 0.94513 1.06790 1.20861 0.94825 0.96548 1.04408 1.20345 0.93124 0.96903 1.08824 1.17919 0.84543 0.93478 0.94122 1.45051 1.02095 1.09417 1.80105 1.21608 0.91938 0.85404 1.00309 1.20851 0.91608 0.99531 0.95074 1.21743 1.01650 0.97817 0.97132 1.21745 1.01939 0.97292 0.97369 1.19092 0.94043 0.89732 0.97262 1.21139 0.91322 0.92688 1.49849 0.92355 1.25012 0.98814 0.95126 0.95547 1.69947 1.34214 0.98783 1.50496 0.86704 0.85442 0.77551 0.78560 1.20323 1.21376 1.20327 1.20557 0.93270 0.97029 1.07883 1.20170 0.92857 0.96260 1.01209 0.87777 0.85913 0.85681 0.85655 0.85984 0.76585 0.92580 0.92574 0.95197 0.91571 0.93439 0.93446 0.91566 0.95197 0.96414 0.96415 0.92969 0.84921 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -2.16 14.63 28.85 0.42 -1.74 16 2 C 0.03 0.26 10.00 28.85 0.29 0.55 16 3 O -0.26 -3.22 10.01 -3.02 -0.03 -3.25 16 4 C 0.04 0.47 6.66 -39.21 -0.26 0.21 16 5 C -0.15 -1.69 9.19 -39.45 -0.36 -2.05 16 6 C -0.17 -2.03 9.89 -39.40 -0.39 -2.42 16 7 C 0.20 2.76 6.66 -83.70 -0.56 2.21 16 8 N -0.74 -10.23 5.14 -58.59 -0.30 -10.53 16 9 C 0.13 2.10 3.80 -4.04 -0.02 2.09 16 10 C -0.07 -1.29 0.54 -154.51 -0.08 -1.37 16 11 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 12 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 13 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 14 C -0.51 -13.40 7.65 -34.44 -0.26 -13.66 16 15 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.16 -2.21 9.31 -39.40 -0.37 -2.57 16 23 C -0.09 -1.10 9.98 -39.45 -0.39 -1.49 16 24 H 0.10 0.91 8.06 -52.49 -0.42 0.48 16 25 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 26 H 0.13 0.96 5.57 -52.49 -0.29 0.67 16 27 H 0.13 1.12 5.71 -52.49 -0.30 0.82 16 28 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.40 5.15 6.18 -40.82 -0.25 4.90 16 30 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 31 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 32 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 37 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.13 1.74 6.73 -52.49 -0.35 1.39 16 42 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -28.64 339.03 -7.34 -35.98 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.24 Total: 3.84 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.59 Total: -21.87 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.44 Total: -35.82 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.03 Total: -3.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.64 -7.34 -35.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839154008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.140 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds