Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47619 * 2 1 4 4 C 1.38165 * 120.02844 * 264.97962 * 3 2 1 5 5 C 1.38249 * 120.05533 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.11206 * 359.97438 * 5 4 3 7 7 C 1.38120 * 120.05620 * 359.77158 * 6 5 4 8 8 C 1.50697 * 120.03005 * 180.27718 * 7 6 5 9 9 N 1.46899 * 109.47207 * 260.22531 * 8 7 6 10 10 C 1.46900 * 111.00236 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47427 * 185.35782 * 10 9 8 12 12 C 1.50698 * 115.55133 * 65.04213 * 11 10 9 13 13 H 1.07994 * 120.00163 * 265.44471 * 12 11 10 14 14 C 1.37881 * 119.99863 * 85.45308 * 12 11 10 15 15 N 1.31516 * 119.99776 * 353.59247 * 14 12 11 16 16 Si 1.86793 * 120.00106 * 173.59512 * 14 12 11 17 17 H 1.48498 * 109.47420 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47166 * 120.00092 * 16 14 12 19 19 H 1.48507 * 109.46920 * 239.99732 * 16 14 12 20 20 C 1.53006 * 117.49332 * 279.37714 * 11 10 9 21 21 C 1.52995 * 117.50010 * 210.72141 * 11 10 9 22 22 C 1.38710 * 120.02654 * 84.99823 * 3 2 1 23 23 O 1.35899 * 120.06043 * 359.97438 * 22 3 2 24 24 H 1.09004 * 109.46466 * 60.00034 * 1 2 3 25 25 H 1.08995 * 109.47535 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47137 * 300.00593 * 1 2 3 27 27 H 1.09004 * 109.47137 * 239.99406 * 2 1 3 28 28 H 1.09003 * 109.46588 * 120.00497 * 2 1 3 29 29 H 1.08002 * 119.97158 * 0.04189 * 4 3 2 30 30 H 1.07998 * 119.94391 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.97373 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47442 * 20.22741 * 8 7 6 33 33 H 1.09004 * 109.47169 * 140.22537 * 8 7 6 34 34 H 1.00894 * 111.00078 * 303.95557 * 9 8 7 35 35 H 1.09005 * 109.47144 * 305.35459 * 10 9 8 36 36 H 1.08996 * 109.47446 * 65.34991 * 10 9 8 37 37 H 0.97000 * 120.00363 * 179.97438 * 15 14 12 38 38 H 1.09003 * 117.49907 * 359.97438 * 20 11 10 39 39 H 1.09006 * 117.49364 * 145.01877 * 20 11 10 40 40 H 1.08994 * 117.50241 * 214.97746 * 21 11 10 41 41 H 1.09005 * 117.49707 * 359.97090 * 21 11 10 42 42 H 0.96705 * 113.99645 * 89.99517 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3617 2.0376 -1.1916 5 6 2.8232 3.3408 -1.1922 6 6 2.9560 4.0303 -0.0009 7 6 2.6232 3.4198 1.1925 8 6 2.7623 4.1738 2.4899 9 7 4.0110 3.7781 3.1548 10 6 4.1803 4.4943 4.4262 11 6 5.5486 4.1584 5.0225 12 6 6.7381 4.6278 4.2252 13 1 7.2154 3.9599 3.5234 14 6 7.2172 5.9099 4.3917 15 7 6.5634 6.7629 5.1498 16 14 8.7948 6.4354 3.5407 17 1 9.3342 5.2986 2.7521 18 1 8.5117 7.5771 2.6343 19 1 9.7931 6.8482 4.5597 20 6 5.6835 2.8362 5.7806 21 6 5.6747 4.1610 6.5473 22 6 2.1652 2.1100 1.1964 23 8 1.8419 1.5055 2.3698 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.2581 1.5015 -2.1234 30 1 3.0796 3.8215 -2.1247 31 1 3.3163 5.0484 -0.0040 32 1 2.7820 5.2447 2.2875 33 1 1.9166 3.9420 3.1373 34 1 4.0451 2.7796 3.2954 35 1 4.1145 5.5680 4.2500 36 1 3.3969 4.1916 5.1209 37 1 6.9006 7.6648 5.2673 38 1 4.7972 2.2059 5.8548 39 1 6.6328 2.3061 5.7028 40 1 6.6180 4.5019 6.9738 41 1 4.7828 4.4025 7.1256 42 1 2.5779 1.0367 2.7865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848907253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = -23.880682 kcal Electronic energy + Delta-G solvation = -21156.847287 eV Core-core repulsion = 18101.337974 eV Total energy + Delta-G solvation = -3055.509313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06584 -38.79478 -37.50988 -36.37948 -34.58804 -33.87788 -31.54322 -29.85920 -27.97931 -27.06148 -24.82086 -24.68908 -22.89914 -22.50499 -21.48786 -20.82686 -19.13526 -18.11041 -17.16044 -16.88440 -16.61871 -16.31799 -15.89669 -15.53600 -15.15392 -15.03148 -14.71471 -14.55316 -14.26493 -13.84693 -13.47801 -13.21468 -13.04149 -12.95908 -12.87370 -12.66763 -12.63660 -12.48418 -12.32360 -12.16422 -12.00190 -11.73192 -11.36349 -11.12280 -10.73519 -10.37560 -9.95248 -9.60956 -9.41949 -9.06657 -8.03228 -6.09210 0.34913 0.41406 1.41134 1.44137 1.54542 2.48159 2.67096 3.26712 3.35336 3.40232 3.69192 3.82172 3.88772 4.04179 4.30433 4.35085 4.43396 4.52392 4.52992 4.58763 4.61678 4.68358 4.71663 4.75729 4.84718 4.98226 4.99543 5.06253 5.10039 5.10896 5.20058 5.28729 5.41253 5.54496 5.61139 5.64750 5.68462 5.74660 5.88269 5.97962 6.29248 6.49484 6.68652 6.83775 6.94378 7.56056 9.06052 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.004497 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.283951 B = 6225.228853 C = 6968.994691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.115 4.115 4 C -0.108 4.108 5 C -0.127 4.127 6 C -0.109 4.109 7 C -0.112 4.112 8 C 0.108 3.892 9 N -0.666 5.666 10 C 0.123 3.877 11 C 0.025 3.975 12 C -0.477 4.477 13 H 0.047 0.953 14 C 0.021 3.979 15 N -0.913 5.913 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.283 1.283 20 C -0.185 4.185 21 C -0.167 4.167 22 C 0.101 3.899 23 O -0.502 6.502 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.335 0.665 35 H 0.041 0.959 36 H 0.007 0.993 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 -11.977 -11.324 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.116 4.116 4 C -0.126 4.126 5 C -0.145 4.145 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.020 4.020 9 N -0.296 5.296 10 C -0.006 4.006 11 C 0.024 3.976 12 C -0.515 4.515 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.552 5.552 16 Si 0.771 3.229 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.209 1.209 20 C -0.223 4.223 21 C -0.205 4.205 22 C 0.056 3.944 23 O -0.313 6.313 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.903 -11.112 -11.708 19.479 hybrid contribution 0.791 0.402 0.763 1.170 sum -10.112 -10.710 -10.945 18.351 Atomic orbital electron populations 1.21676 0.94446 1.02207 1.01415 1.20421 0.96385 0.90944 1.03430 1.20437 1.00867 0.97830 0.92422 1.21249 0.98609 0.94904 0.97872 1.21400 0.99797 0.95134 0.98177 1.21118 0.98964 1.00626 0.92072 1.20178 1.00436 0.95171 0.95513 1.20653 0.90789 0.98483 0.92120 1.60270 1.34498 1.10290 1.24570 1.21209 0.94363 0.96998 0.88073 1.18916 0.93381 0.95342 0.89977 1.20549 1.11818 0.97251 1.21907 0.93489 1.25575 0.99415 0.96713 0.96045 1.70120 1.39526 1.05086 1.40454 0.85728 0.80782 0.78036 0.78392 1.19427 1.21174 1.20940 1.22983 1.01227 0.90723 1.07327 1.22432 0.99787 1.01245 0.97014 1.18239 0.99330 0.90772 0.86010 1.84742 1.40186 1.71461 1.34953 0.92648 0.91027 0.94071 0.89507 0.90957 0.83156 0.83628 0.86084 0.91954 0.94896 0.84764 0.94067 0.97548 0.93565 0.89114 0.90503 0.92444 0.91155 0.74418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.90 71.98 0.71 -1.61 16 2 C -0.07 -1.28 5.79 29.85 0.17 -1.11 16 3 C -0.12 -2.59 5.15 -19.77 -0.10 -2.69 16 4 C -0.11 -2.22 9.68 22.25 0.22 -2.00 16 5 C -0.13 -2.87 10.04 22.28 0.22 -2.65 16 6 C -0.11 -3.09 9.66 22.25 0.22 -2.87 16 7 C -0.11 -3.42 5.41 -19.77 -0.11 -3.53 16 8 C 0.11 3.74 5.47 85.56 0.47 4.21 16 9 N -0.67 -25.97 6.37 -517.93 -3.30 -29.27 16 10 C 0.12 5.51 5.51 86.30 0.48 5.99 16 11 C 0.02 1.19 1.55 -52.93 -0.08 1.11 16 12 C -0.48 -26.21 8.74 25.60 0.22 -25.99 16 13 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 14 C 0.02 1.19 5.39 84.66 0.46 1.64 16 15 N -0.91 -52.93 12.92 21.45 0.28 -52.66 16 16 Si 0.94 44.56 29.54 68.60 2.03 46.58 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 C -0.19 -7.68 9.96 30.62 0.30 -7.38 16 21 C -0.17 -7.82 9.41 30.62 0.29 -7.54 16 22 C 0.10 2.73 6.65 22.51 0.15 2.88 16 23 O -0.50 -12.52 11.83 -92.41 -1.09 -13.61 16 24 H 0.05 0.87 8.14 -2.38 -0.02 0.86 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.17 8.05 -2.39 -0.02 1.15 16 28 H 0.07 1.22 7.69 -2.39 -0.02 1.21 16 29 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.12 3.44 8.04 -2.91 -0.02 3.42 16 32 H 0.06 2.28 8.01 -2.38 -0.02 2.26 16 33 H 0.03 1.13 7.86 -2.38 -0.02 1.11 16 34 H 0.33 11.76 8.48 -89.70 -0.76 11.00 16 35 H 0.04 2.12 8.13 -2.38 -0.02 2.11 16 36 H 0.01 0.27 8.09 -2.39 -0.02 0.26 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 40 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 42 H 0.40 7.40 8.82 -74.05 -0.65 6.75 16 Total: -1.00 -63.61 352.66 1.12 -62.49 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.41 Total: 28.00 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.61 Total: -41.53 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.02 Total: -81.93 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.09 Total: -13.61 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.61 1.12 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848907253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.609 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds