Wall clock time and date at job start Mon Mar 30 2020 02:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00329 * 2 1 4 4 N 1.46893 * 109.47247 * 124.99936 * 3 2 1 5 5 C 1.46903 * 110.99739 * 288.74490 * 4 3 2 6 6 C 1.50703 * 109.47235 * 160.80451 * 5 4 3 7 7 H 1.08002 * 119.99452 * 3.79504 * 6 5 4 8 8 C 1.37872 * 119.99981 * 183.79784 * 6 5 4 9 9 N 1.31506 * 120.00245 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99628 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47435 * 59.99929 * 10 8 6 12 12 H 1.48505 * 109.47078 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47402 * 299.99785 * 10 8 6 14 14 C 1.46900 * 111.00115 * 164.79546 * 4 3 2 15 15 C 1.50702 * 109.46703 * 288.24392 * 14 4 3 16 16 C 1.38172 * 120.02727 * 105.03984 * 15 14 4 17 17 C 1.38242 * 120.05726 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.10880 * 359.97438 * 17 16 15 19 19 C 1.38114 * 120.05635 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.02653 * 179.97438 * 19 18 17 21 21 C 1.53008 * 109.47115 * 264.99923 * 20 19 18 22 22 C 1.38712 * 120.03106 * 285.01462 * 15 14 4 23 23 O 1.35899 * 120.05040 * 0.04279 * 22 15 14 24 24 H 1.07996 * 120.00008 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00387 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99838 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47142 * 4.99391 * 3 2 1 28 28 H 1.09003 * 109.46785 * 244.99512 * 3 2 1 29 29 H 1.09007 * 109.47121 * 280.80277 * 5 4 3 30 30 H 1.08998 * 109.46978 * 40.80733 * 5 4 3 31 31 H 0.97002 * 120.00547 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47244 * 168.24628 * 14 4 3 33 33 H 1.08996 * 109.47149 * 48.23957 * 14 4 3 34 34 H 1.08002 * 119.96756 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.94478 * 180.02562 * 17 16 15 36 36 H 1.07996 * 119.96833 * 179.74841 * 18 17 16 37 37 H 1.08996 * 109.47157 * 24.99911 * 20 19 18 38 38 H 1.09005 * 109.47438 * 145.00021 * 20 19 18 39 39 H 1.09004 * 109.46888 * 300.00241 * 21 20 19 40 40 H 1.08996 * 109.47073 * 59.99827 * 21 20 19 41 41 H 1.09001 * 109.46774 * 180.02562 * 21 20 19 42 42 H 0.96704 * 113.99672 * 90.00375 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2744 1.4715 2.4063 6 6 3.1645 1.0316 3.5400 7 1 4.1860 0.7414 3.3432 8 6 2.6747 0.9996 4.8284 9 7 1.4310 1.3533 5.0681 10 14 3.7778 0.4536 6.2336 11 1 4.9539 1.3563 6.3192 12 1 3.0187 0.5081 7.5088 13 1 4.2380 -0.9371 5.9901 14 6 3.9905 2.4012 0.9734 15 6 4.9590 2.0262 -0.1187 16 6 4.8759 2.6358 -1.3559 17 6 5.7643 2.2926 -2.3579 18 6 6.7385 1.3392 -2.1247 19 6 6.8258 0.7270 -0.8898 20 6 7.8873 -0.3123 -0.6366 21 6 7.3046 -1.7061 -0.8792 22 6 5.9350 1.0692 0.1175 23 8 6.0185 0.4681 1.3334 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4024 -0.9314 29 1 1.9908 2.5141 2.5505 30 1 1.3787 0.8508 2.3857 31 1 1.0864 1.3312 5.9746 32 1 4.5329 2.5371 1.9091 33 1 3.4855 3.3299 0.7079 34 1 4.1161 3.3809 -1.5402 35 1 5.6979 2.7705 -3.3242 36 1 7.4288 1.0699 -2.9104 37 1 8.7264 -0.1467 -1.3122 38 1 8.2311 -0.2367 0.3950 39 1 6.4654 -1.8717 -0.2035 40 1 6.9608 -1.7817 -1.9107 41 1 8.0723 -2.4578 -0.6956 42 1 5.4896 -0.3378 1.4109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848913300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:33 Heat of formation + Delta-G solvation = -5.778661 kcal Electronic energy + Delta-G solvation = -21709.232592 eV Core-core repulsion = 18654.508242 eV Total energy + Delta-G solvation = -3054.724350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84848 -37.02657 -36.11232 -34.10767 -33.09294 -32.27288 -30.27835 -28.80059 -27.24122 -25.96732 -23.74996 -23.71881 -21.63479 -20.84046 -19.89150 -19.17314 -17.72436 -16.37396 -15.86008 -15.72962 -15.06283 -14.81263 -14.33690 -14.10420 -13.87044 -13.81264 -13.51135 -13.31845 -12.66817 -12.55016 -12.20065 -12.05389 -11.85766 -11.53787 -11.40601 -11.26420 -11.09213 -10.91372 -10.75587 -10.62157 -10.46363 -10.44646 -10.01085 -9.73717 -9.22323 -8.84020 -8.41081 -8.35966 -8.16896 -7.30591 -5.97109 -3.97631 1.53574 1.57359 2.80116 3.37716 3.41293 3.45205 3.85453 4.47903 4.72687 4.86587 4.98887 5.02709 5.24944 5.26196 5.38857 5.43246 5.53641 5.56583 5.58003 5.67658 5.75251 5.88807 5.96943 6.02142 6.04424 6.15971 6.20935 6.22712 6.33999 6.41701 6.60420 6.66781 6.67824 6.90445 7.08667 7.11897 7.22752 7.29232 7.38099 7.88391 8.13091 8.20810 8.23753 8.56813 9.11436 9.66312 11.13622 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.006277 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.382745 B = 4459.518798 C = 5477.383381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C 0.076 3.924 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.069 0.931 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.102 3.898 15 C -0.088 4.088 16 C -0.111 4.111 17 C -0.134 4.134 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.079 4.079 21 C -0.144 4.144 22 C 0.139 3.861 23 O -0.485 6.485 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.027 0.973 28 H 0.068 0.932 29 H -0.013 1.013 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.098 0.902 33 H 0.027 0.973 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 -1.771 -14.611 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.139 4.139 3 C -0.052 4.052 4 N -0.249 5.249 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.087 0.913 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.203 1.203 14 C -0.026 4.026 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.152 4.152 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.202 4.202 22 C 0.093 3.907 23 O -0.296 6.296 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.045 0.955 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.062 -1.737 -14.283 16.493 hybrid contribution -0.391 0.150 0.741 0.851 sum 7.670 -1.586 -13.543 15.645 Atomic orbital electron populations 1.23677 0.96011 1.01137 1.03543 1.22814 0.95318 0.98638 0.97081 1.21229 0.94480 0.94157 0.95361 1.62100 1.15147 1.44624 1.03036 1.19782 0.94139 0.95260 0.84011 1.21186 0.98568 1.43589 0.90725 0.91293 1.24970 0.95033 0.95759 0.98852 1.69951 1.14521 1.48869 1.20765 0.86593 0.80462 0.79267 0.81244 1.20314 1.21602 1.20262 1.20886 0.92590 0.91935 0.97207 1.20439 0.96002 0.97233 0.95277 1.20962 0.99248 1.00169 0.92633 1.20982 0.96344 0.98937 0.98979 1.20789 0.99069 0.97389 0.95984 1.20201 0.98920 0.99191 0.93421 1.20394 0.95661 0.92922 1.02690 1.21700 1.01074 0.95726 1.01662 1.18091 0.93479 0.94293 0.84797 1.84692 1.71256 1.44545 1.29149 0.89197 0.88980 0.87501 0.95514 0.91355 0.99523 0.94466 0.93022 0.88412 0.95495 0.86424 0.86522 0.86513 0.91679 0.90419 0.92456 0.92908 0.92650 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.32 14.32 29.02 0.42 -2.90 16 2 C -0.12 -2.08 8.71 -36.02 -0.31 -2.39 16 3 C 0.08 1.36 5.25 -4.98 -0.03 1.34 16 4 N -0.52 -10.79 4.33 -238.97 -1.03 -11.82 16 5 C 0.19 4.90 4.58 -4.97 -0.02 4.88 16 6 C -0.50 -13.75 8.53 -34.44 -0.29 -14.04 16 7 H 0.07 1.86 7.72 -52.49 -0.40 1.45 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.10 1.95 4.54 -4.98 -0.02 1.93 16 15 C -0.09 -1.47 4.71 -104.47 -0.49 -1.96 16 16 C -0.11 -1.59 8.77 -39.60 -0.35 -1.93 16 17 C -0.13 -1.68 10.04 -39.56 -0.40 -2.08 16 18 C -0.11 -1.42 9.68 -39.61 -0.38 -1.81 16 19 C -0.12 -1.62 5.15 -104.48 -0.54 -2.16 16 20 C -0.08 -0.93 5.79 -27.88 -0.16 -1.10 16 21 C -0.14 -1.54 9.90 37.16 0.37 -1.17 16 22 C 0.14 2.27 6.65 -39.22 -0.26 2.01 16 23 O -0.49 -8.45 11.98 -19.42 -0.23 -8.68 16 24 H 0.09 1.42 7.84 -52.49 -0.41 1.01 16 25 H 0.09 1.33 8.06 -52.49 -0.42 0.90 16 26 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.03 0.49 7.71 -51.93 -0.40 0.09 16 28 H 0.07 1.13 6.47 -51.93 -0.34 0.79 16 29 H -0.01 -0.36 8.01 -51.92 -0.42 -0.78 16 30 H 0.04 1.02 7.10 -51.93 -0.37 0.66 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.10 2.14 7.12 -51.93 -0.37 1.77 16 33 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 34 H 0.12 1.51 8.00 -52.49 -0.42 1.09 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.40 6.28 9.06 45.56 0.41 6.70 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -29.74 350.12 -8.88 -38.63 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.03 Total: 5.79 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -2.57 Total: -19.95 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.30 Total: -37.86 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.23 Total: -8.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.74 -8.88 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848913300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.847 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds