Wall clock time and date at job start Mon Mar 30 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00329 * 2 1 4 4 N 1.46893 * 109.47247 * 124.99936 * 3 2 1 5 5 C 1.46903 * 110.99739 * 288.74490 * 4 3 2 6 6 C 1.50703 * 109.47235 * 160.80451 * 5 4 3 7 7 H 1.08002 * 119.99452 * 3.79504 * 6 5 4 8 8 C 1.37872 * 119.99981 * 183.79784 * 6 5 4 9 9 N 1.31506 * 120.00245 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99628 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47435 * 59.99929 * 10 8 6 12 12 H 1.48505 * 109.47078 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47402 * 299.99785 * 10 8 6 14 14 C 1.46900 * 111.00115 * 164.79546 * 4 3 2 15 15 C 1.50702 * 109.46703 * 288.24392 * 14 4 3 16 16 C 1.38172 * 120.02727 * 105.03984 * 15 14 4 17 17 C 1.38242 * 120.05726 * 179.97438 * 16 15 14 18 18 C 1.38296 * 120.10880 * 359.97438 * 17 16 15 19 19 C 1.38114 * 120.05635 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.02653 * 179.97438 * 19 18 17 21 21 C 1.53008 * 109.47115 * 264.99923 * 20 19 18 22 22 C 1.38712 * 120.03106 * 285.01462 * 15 14 4 23 23 O 1.35899 * 120.05040 * 0.04279 * 22 15 14 24 24 H 1.07996 * 120.00008 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00387 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99838 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47142 * 4.99391 * 3 2 1 28 28 H 1.09003 * 109.46785 * 244.99512 * 3 2 1 29 29 H 1.09007 * 109.47121 * 280.80277 * 5 4 3 30 30 H 1.08998 * 109.46978 * 40.80733 * 5 4 3 31 31 H 0.97002 * 120.00547 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47244 * 168.24628 * 14 4 3 33 33 H 1.08996 * 109.47149 * 48.23957 * 14 4 3 34 34 H 1.08002 * 119.96756 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.94478 * 180.02562 * 17 16 15 36 36 H 1.07996 * 119.96833 * 179.74841 * 18 17 16 37 37 H 1.08996 * 109.47157 * 24.99911 * 20 19 18 38 38 H 1.09005 * 109.47438 * 145.00021 * 20 19 18 39 39 H 1.09004 * 109.46888 * 300.00241 * 21 20 19 40 40 H 1.08996 * 109.47073 * 59.99827 * 21 20 19 41 41 H 1.09001 * 109.46774 * 180.02562 * 21 20 19 42 42 H 0.96704 * 113.99672 * 90.00375 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2744 1.4715 2.4063 6 6 3.1645 1.0316 3.5400 7 1 4.1860 0.7414 3.3432 8 6 2.6747 0.9996 4.8284 9 7 1.4310 1.3533 5.0681 10 14 3.7778 0.4536 6.2336 11 1 4.9539 1.3563 6.3192 12 1 3.0187 0.5081 7.5088 13 1 4.2380 -0.9371 5.9901 14 6 3.9905 2.4012 0.9734 15 6 4.9590 2.0262 -0.1187 16 6 4.8759 2.6358 -1.3559 17 6 5.7643 2.2926 -2.3579 18 6 6.7385 1.3392 -2.1247 19 6 6.8258 0.7270 -0.8898 20 6 7.8873 -0.3123 -0.6366 21 6 7.3046 -1.7061 -0.8792 22 6 5.9350 1.0692 0.1175 23 8 6.0185 0.4681 1.3334 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4024 -0.9314 29 1 1.9908 2.5141 2.5505 30 1 1.3787 0.8508 2.3857 31 1 1.0864 1.3312 5.9746 32 1 4.5329 2.5371 1.9091 33 1 3.4855 3.3299 0.7079 34 1 4.1161 3.3809 -1.5402 35 1 5.6979 2.7705 -3.3242 36 1 7.4288 1.0699 -2.9104 37 1 8.7264 -0.1467 -1.3122 38 1 8.2311 -0.2367 0.3950 39 1 6.4654 -1.8717 -0.2035 40 1 6.9608 -1.7817 -1.9107 41 1 8.0723 -2.4578 -0.6956 42 1 5.4896 -0.3378 1.4109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848913300.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:32 Heat of formation + Delta-G solvation = -23.856910 kcal Electronic energy + Delta-G solvation = -21710.016523 eV Core-core repulsion = 18654.508242 eV Total energy + Delta-G solvation = -3055.508282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02614 -38.60353 -37.32628 -35.19860 -34.94526 -33.87966 -31.60652 -29.83711 -29.16084 -27.36190 -25.54282 -24.71595 -23.07794 -22.18948 -21.16109 -20.59875 -18.97484 -18.42087 -17.19085 -16.92382 -16.66303 -16.18272 -16.04913 -15.44221 -15.17344 -15.05881 -14.79184 -14.54888 -14.06836 -13.96726 -13.66977 -13.35299 -13.21865 -13.02721 -12.82275 -12.60966 -12.57544 -12.42634 -12.30965 -12.15739 -11.92632 -11.78482 -11.63449 -11.30119 -11.02591 -10.57503 -10.20868 -9.52719 -9.30889 -9.04148 -8.15239 -6.22894 0.44259 0.45142 1.41094 1.43884 1.44423 1.51813 2.42881 2.74286 3.17037 3.44376 3.60069 3.81590 3.92749 4.08083 4.20818 4.26632 4.33830 4.39581 4.54368 4.57370 4.60168 4.68329 4.73277 4.79580 4.81723 5.02579 5.06661 5.12786 5.14974 5.20874 5.24711 5.30505 5.43590 5.60032 5.61887 5.73443 5.74024 5.77788 5.88752 6.05110 6.14173 6.36836 6.64389 6.93829 6.99222 7.45722 8.95436 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.006277 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.382745 B = 4459.518798 C = 5477.383381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.079 3.921 4 N -0.521 5.521 5 C 0.211 3.789 6 C -0.510 4.510 7 H 0.069 0.931 8 C 0.002 3.998 9 N -0.937 5.937 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.110 3.890 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.125 4.125 18 C -0.108 4.108 19 C -0.119 4.119 20 C -0.077 4.077 21 C -0.141 4.141 22 C 0.113 3.887 23 O -0.502 6.502 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.019 0.981 28 H 0.088 0.912 29 H -0.047 1.047 30 H 0.014 0.986 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -2.496 -16.779 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.160 4.160 3 C -0.048 4.048 4 N -0.245 5.245 5 C 0.085 3.915 6 C -0.548 4.548 7 H 0.087 0.913 8 C -0.195 4.195 9 N -0.578 5.578 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.017 4.017 15 C -0.111 4.111 16 C -0.135 4.135 17 C -0.143 4.143 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.198 4.198 22 C 0.068 3.932 23 O -0.313 6.313 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.037 0.963 28 H 0.106 0.894 29 H -0.029 1.029 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.648 -2.462 -16.476 19.251 hybrid contribution -0.879 0.413 1.301 1.623 sum 8.769 -2.049 -15.175 17.646 Atomic orbital electron populations 1.23895 0.95721 1.02200 1.01481 1.22842 0.95873 0.98291 0.98957 1.21257 0.94115 0.94511 0.94916 1.62015 1.15248 1.45239 1.01999 1.19385 0.93425 0.92415 0.86289 1.21484 0.98742 1.42990 0.91613 0.91314 1.25812 0.96345 0.95859 1.01515 1.70078 1.16258 1.50139 1.21346 0.85545 0.78515 0.79178 0.77993 1.20009 1.21142 1.19157 1.20690 0.92472 0.91654 0.96918 1.20248 0.96252 0.99059 0.95521 1.21128 1.00142 1.00192 0.92015 1.21364 0.95016 0.98215 0.99674 1.21219 0.99119 0.96277 0.95941 1.20452 0.98589 0.99581 0.93351 1.20424 0.95746 0.92892 1.02392 1.21675 1.00966 0.95481 1.01704 1.18366 0.94738 0.94929 0.85164 1.84676 1.71375 1.44759 1.30521 0.89090 0.86961 0.87214 0.96261 0.89405 1.02915 0.96788 0.92969 0.92015 0.95477 0.85331 0.83083 0.83157 0.89357 0.91963 0.94019 0.92100 0.91136 0.74755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.17 14.32 67.79 0.97 -5.20 16 2 C -0.14 -4.88 8.71 25.65 0.22 -4.65 16 3 C 0.08 2.89 5.25 85.56 0.45 3.34 16 4 N -0.52 -22.24 4.33 -909.95 -3.94 -26.17 16 5 C 0.21 11.25 4.58 85.56 0.39 11.64 16 6 C -0.51 -28.92 8.53 25.60 0.22 -28.71 16 7 H 0.07 3.83 7.72 -2.91 -0.02 3.81 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.94 -57.19 13.29 21.44 0.28 -56.90 16 10 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.11 4.43 4.54 85.56 0.39 4.82 16 15 C -0.11 -3.66 4.71 -19.77 -0.09 -3.75 16 16 C -0.12 -3.10 8.77 22.25 0.20 -2.90 16 17 C -0.12 -2.66 10.04 22.28 0.22 -2.43 16 18 C -0.11 -2.28 9.68 22.25 0.22 -2.06 16 19 C -0.12 -3.09 5.15 -19.77 -0.10 -3.19 16 20 C -0.08 -1.66 5.79 29.85 0.17 -1.49 16 21 C -0.14 -2.73 9.90 71.98 0.71 -2.02 16 22 C 0.11 3.69 6.65 22.51 0.15 3.84 16 23 O -0.50 -18.12 11.98 -92.41 -1.11 -19.23 16 24 H 0.09 2.83 7.84 -2.91 -0.02 2.81 16 25 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.11 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.02 0.73 7.71 -2.39 -0.02 0.71 16 28 H 0.09 2.84 6.47 -2.39 -0.02 2.82 16 29 H -0.05 -2.76 8.01 -2.38 -0.02 -2.78 16 30 H 0.01 0.81 7.10 -2.39 -0.02 0.79 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.06 2.88 7.12 -2.39 -0.02 2.87 16 33 H 0.03 1.06 7.86 -2.39 -0.02 1.04 16 34 H 0.13 3.07 8.00 -2.91 -0.02 3.05 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 38 H 0.06 1.53 7.69 -2.38 -0.02 1.51 16 39 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.39 13.26 9.06 -74.05 -0.67 12.59 16 Total: -1.00 -65.88 350.12 2.16 -63.72 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.32 Total: 23.22 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 4.58 Total: -32.17 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.65 Total: -83.08 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.11 Total: -19.23 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.88 2.16 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848913300.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.865 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds